Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:03:48 (856568): wrapper (7.7.26015): starting
00:03:48 (856568): wrapper: running run_atlas (--nthreads 9)
[2025-11-26 00:03:48] Arguments: --nthreads 9
[2025-11-26 00:03:48] Threads: 9
[2025-11-26 00:03:48] Checking for CVMFS
[2025-11-26 00:03:49] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 00:03:49] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 00:03:49] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 00:03:50] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 00:03:50] 2.13.2.0 9388 33400 171032 153309 1 197 32119436 39288832 7997 16776704 0 24545483 99.624 24577717 40403 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-26 00:03:50] CVMFS is ok
[2025-11-26 00:03:50] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 00:03:50] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 00:03:50] Further information can be found at the LHC@home message board.
[2025-11-26 00:03:50] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 00:03:50] Checking for apptainer binary...
[2025-11-26 00:03:50] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 00:03:50] Running /usr/bin/apptainer --version
[2025-11-26 00:03:50] apptainer version 1.4.4-1.el9
[2025-11-26 00:03:50] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 00:03:51] c-210-25.aglt2.org
[2025-11-26 00:03:51] apptainer works
[2025-11-26 00:03:51] Set ATHENA_PROC_NUMBER=9
[2025-11-26 00:03:51] Set ATHENA_CORE_NUMBER=9
[2025-11-26 00:03:51] Starting ATLAS job with PandaID=6897663404
[2025-11-26 00:03:51] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 20:17:19]  *** The last 200 lines of the pilot log: ***
[2025-11-27 20:17:19] 2025-11-28 00:44:26,433 | INFO     | time since job start (157168s) is within the limit (172800.0s)
[2025-11-27 20:17:19] 2025-11-28 00:44:27,790 | INFO     | monitor loop #9845: job 0:6897663404 is in state 'finished'
[2025-11-27 20:17:19] 2025-11-28 00:44:27,790 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 20:17:19] 2025-11-28 00:44:28,440 | INFO     | time since job start (157170s) is within the limit (172800.0s)
[2025-11-27 20:17:19] 2025-11-28 00:44:30,295 | INFO     | monitor loop #9846: job 0:6897663404 is in state 'finished'
[2025-11-27 20:17:19] 2025-11-28 00:44:30,295 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 20:17:19] 2025-11-28 00:44:30,449 | INFO     | time since job start (157172s) is within the limit (172800.0s)
[2025-11-27 20:17:19] 2025-11-28 00:44:32,460 | INFO     | time since job start (157174s) is within the limit (172800.0s)
[2025-11-27 20:17:19] 2025-11-28 00:44:32,803 | INFO     | monitor loop #9847: job 0:6897663404 is in state 'finished'
[2025-11-27 20:17:19] 2025-11-28 00:44:32,803 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 20:17:19] 2025-11-28 00:44:34,477 | INFO     | time since job start (157176s) is within the limit (172800.0s)
[2025-11-27 20:17:19] 2025-11-28 00:44:35,323 | INFO     | monitor loop #9848: job 0:6897663404 is in state 'finished'
[2025-11-27 20:17:19] 2025-11-28 00:44:35,323 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 20:17:19] 2025-11-28 00:44:36,492 | INFO     | time since job start (157178s) is within the limit (172800.0s)
[2025-11-27 20:17:19] 2025-11-28 00:44:36,738 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-27 20:17:19] 2025-11-28 00:44:36,753 | INFO     | found 20 cores (10 cores per socket, 2 sockets) HT, CPU MHz: 2600.1692499999995
[2025-11-27 20:17:19] 2025-11-28 00:44:36,776 | INFO     | using path: /tmp/boinchome/slots/3/PanDA_Pilot-6897663404/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 20:17:19] 2025-11-28 00:44:36,777 | INFO     | extracted standard info from prmon json
[2025-11-27 20:17:19] 2025-11-28 00:44:36,777 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 20:17:19] 2025-11-28 00:44:36,785 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 20:17:19] 2025-11-28 00:44:36,936 | INFO     | fitting pss+swap vs Time
[2025-11-27 20:17:19] 2025-11-28 00:44:36,948 | INFO     | sum of square deviations: 5287986077738.691
[2025-11-27 20:17:19] 2025-11-28 00:44:37,469 | INFO     | sum of deviations: 17267140001728.861
[2025-11-27 20:17:19] 2025-11-28 00:44:37,474 | INFO     | mean x: 1764212126.0633256
[2025-11-27 20:17:19] 2025-11-28 00:44:37,475 | INFO     | mean y: 3072337.5225330223
[2025-11-27 20:17:19] 2025-11-28 00:44:37,475 | INFO     | intersect: -5757702620.211481
[2025-11-27 20:17:19] 2025-11-28 00:44:37,483 | INFO     | chi2: 27.69933199666847
[2025-11-27 20:17:19] 2025-11-28 00:44:37,491 | INFO     | sum of square deviations: 5257231954267.582
[2025-11-27 20:17:19] 2025-11-28 00:44:37,836 | INFO     | sum of deviations: 18168415582480.113
[2025-11-27 20:17:19] 2025-11-28 00:44:37,837 | INFO     | mean x: 1764211973.5702608
[2025-11-27 20:17:19] 2025-11-28 00:44:37,837 | INFO     | mean y: 3076806.0517711174
[2025-11-27 20:17:19] 2025-11-28 00:44:37,837 | INFO     | intersect: -6093845793.186561
[2025-11-27 20:17:19] 2025-11-28 00:44:37,845 | INFO     | chi2: 24.600966343962668
[2025-11-27 20:17:19] 2025-11-28 00:44:37,854 | INFO     | current chi2=24.600966343962668 (change=11.185705319819471 %)
[2025-11-27 20:17:19] 2025-11-28 00:44:37,854 | INFO     | right removable region: 2568
[2025-11-27 20:17:19] 2025-11-28 00:44:37,850 | INFO     | monitor loop #9849: job 0:6897663404 is in state 'finished'
[2025-11-27 20:17:19] 2025-11-28 00:44:37,866 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 20:17:19] 2025-11-28 00:44:37,866 | INFO     | sum of square deviations: 5257226359347.55
[2025-11-27 20:17:19] 2025-11-28 00:44:38,268 | INFO     | sum of deviations: 16173956990827.174
[2025-11-27 20:17:19] 2025-11-28 00:44:38,269 | INFO     | mean x: 1764212278.5702608
[2025-11-27 20:17:19] 2025-11-28 00:44:38,269 | INFO     | mean y: 3077757.112495134
[2025-11-27 20:17:19] 2025-11-28 00:44:38,269 | INFO     | intersect: -5424554908.075973
[2025-11-27 20:17:19] 2025-11-28 00:44:38,280 | INFO     | chi2: 23.627372229239924
[2025-11-27 20:17:19] 2025-11-28 00:44:38,281 | INFO     | current chi2=23.627372229239924 (change=14.700570280605682 %)
[2025-11-27 20:17:19] 2025-11-28 00:44:38,281 | INFO     | left removable region: 10
[2025-11-27 20:17:19] 2025-11-28 00:44:38,295 | INFO     | sum of square deviations: 5189981972298.26
[2025-11-27 20:17:19] 2025-11-28 00:44:38,511 | INFO     | time since job start (157180s) is within the limit (172800.0s)
[2025-11-27 20:17:19] 2025-11-28 00:44:38,792 | INFO     | sum of deviations: 16303172476168.787
[2025-11-27 20:17:19] 2025-11-28 00:44:38,792 | INFO     | mean x: 1764212248.0856137
[2025-11-27 20:17:19] 2025-11-28 00:44:38,792 | INFO     | mean y: 3087801.120015637
[2025-11-27 20:17:19] 2025-11-28 00:44:38,793 | INFO     | intersect: -5538792058.700106
[2025-11-27 20:17:19] 2025-11-28 00:44:38,804 | INFO     | chi2: 17.029145831047757
[2025-11-27 20:17:19] 2025-11-28 00:44:38,805 | INFO     | current memory leak: 3.14 B/s (using 2558 data points, chi2=17.03)
[2025-11-27 20:17:19] 2025-11-28 00:44:38,816 | INFO     | could have reported an average CPU frequency of 2600 MHz (89 samples)
[2025-11-27 20:17:19] 2025-11-28 00:44:38,816 | INFO     | ..............................
[2025-11-27 20:17:19] 2025-11-28 00:44:38,826 | INFO     | . Timing measurements:
[2025-11-27 20:17:19] 2025-11-28 00:44:38,826 | INFO     | . get job = 0 s
[2025-11-27 20:17:19] 2025-11-28 00:44:38,826 | INFO     | . initial setup = 5 s
[2025-11-27 20:17:19] 2025-11-28 00:44:38,826 | INFO     | . payload setup = 43 s
[2025-11-27 20:17:19] 2025-11-28 00:44:38,826 | INFO     | . stage-in = 1 s
[2025-11-27 20:17:19] 2025-11-28 00:44:38,826 | INFO     | . payload execution = 156997 s
[2025-11-27 20:17:19] 2025-11-28 00:44:38,826 | INFO     | . stage-out = 9 s
[2025-11-27 20:17:19] 2025-11-28 00:44:38,827 | INFO     | . log creation = 1 s
[2025-11-27 20:17:19] 2025-11-28 00:44:38,827 | INFO     | ..............................
[2025-11-27 20:17:19] 2025-11-28 00:44:39,196 | INFO     | 
[2025-11-27 20:17:19] 2025-11-28 00:44:39,197 | INFO     | job summary report
[2025-11-27 20:17:19] 2025-11-28 00:44:39,197 | INFO     | --------------------------------------------------
[2025-11-27 20:17:19] 2025-11-28 00:44:39,197 | INFO     | PanDA job id: 6897663404
[2025-11-27 20:17:19] 2025-11-28 00:44:39,197 | INFO     | task id: 47556161
[2025-11-27 20:17:19] 2025-11-28 00:44:39,197 | INFO     | errors: (none)
[2025-11-27 20:17:19] 2025-11-28 00:44:39,197 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 20:17:19] 2025-11-28 00:44:39,197 | INFO     | pilot state: finished 
[2025-11-27 20:17:19] 2025-11-28 00:44:39,197 | INFO     | transexitcode: 0
[2025-11-27 20:17:19] 2025-11-28 00:44:39,197 | INFO     | exeerrorcode: 0
[2025-11-27 20:17:19] 2025-11-28 00:44:39,198 | INFO     | exeerrordiag: 
[2025-11-27 20:17:19] 2025-11-28 00:44:39,198 | INFO     | exitcode: 0
[2025-11-27 20:17:19] 2025-11-28 00:44:39,198 | INFO     | exitmsg: OK
[2025-11-27 20:17:19] 2025-11-28 00:44:39,198 | INFO     | cpuconsumptiontime: 332185 s
[2025-11-27 20:17:19] 2025-11-28 00:44:39,198 | INFO     | nevents: 1000
[2025-11-27 20:17:19] 2025-11-28 00:44:39,198 | INFO     | neventsw: 0
[2025-11-27 20:17:19] 2025-11-28 00:44:39,198 | INFO     | pid: 869662
[2025-11-27 20:17:19] 2025-11-28 00:44:39,198 | INFO     | pgrp: 869662
[2025-11-27 20:17:19] 2025-11-28 00:44:39,198 | INFO     | corecount: 9
[2025-11-27 20:17:19] 2025-11-28 00:44:39,198 | INFO     | event service: False
[2025-11-27 20:17:19] 2025-11-28 00:44:39,199 | INFO     | sizes: {0: 2283437, 1: 2284293, 12: 2284293, 23: 2284321, 35: 2284639, 46: 2284639, 157045: 2383221, 157046: 2383220, 157056: 2392270, 157058: 2392326, 157099: 239
[2025-11-27 20:17:19] 2025-11-28 00:44:39,199 | INFO     | --------------------------------------------------
[2025-11-27 20:17:19] 2025-11-28 00:44:39,199 | INFO     | 
[2025-11-27 20:17:19] 2025-11-28 00:44:39,199 | INFO     | executing command: ls -lF /tmp/boinchome/slots/3
[2025-11-27 20:17:19] 2025-11-28 00:44:39,255 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 20:17:19] 2025-11-28 00:44:39,255 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 20:17:19] 2025-11-28 00:44:39,255 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 20:17:19] 2025-11-28 00:44:39,256 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 20:17:19] 2025-11-28 00:44:39,256 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 20:17:19] 2025-11-28 00:44:39,256 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 20:17:19] 2025-11-28 00:44:39,256 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 20:17:19] 2025-11-28 00:44:39,256 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 20:17:19] 2025-11-28 00:44:39,256 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 20:17:19] 2025-11-28 00:44:39,256 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 20:17:19] 2025-11-28 00:44:39,256 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 20:17:19] 2025-11-28 00:44:39,256 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 20:17:19] 2025-11-28 00:44:39,257 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 20:17:19] 2025-11-28 00:44:39,257 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 20:17:19] 2025-11-28 00:44:39,257 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 20:17:19] 2025-11-28 00:44:39,257 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 20:17:19] 2025-11-28 00:44:39,257 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 20:17:19] 2025-11-28 00:44:39,257 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 20:17:19] 2025-11-28 00:44:39,257 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 20:17:19] 2025-11-28 00:44:39,257 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 20:17:19] 2025-11-28 00:44:39,258 | INFO     | job 6897663404 has completed (purged errors)
[2025-11-27 20:17:19] 2025-11-28 00:44:39,258 | INFO     | overall cleanup function is called
[2025-11-27 20:17:19] 2025-11-28 00:44:40,333 | INFO     | --- collectZombieJob: --- 10, [869662]
[2025-11-27 20:17:19] 2025-11-28 00:44:40,333 | INFO     | zombie collector waiting for pid 869662
[2025-11-27 20:17:19] 2025-11-28 00:44:40,333 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 20:17:19] 2025-11-28 00:44:40,333 | INFO     | collected zombie processes
[2025-11-27 20:17:19] 2025-11-28 00:44:40,333 | INFO     | will attempt to kill all subprocesses of pid=869662
[2025-11-27 20:17:19] 2025-11-28 00:44:41,210 | INFO     | process IDs to be killed: [869662] (in reverse order)
[2025-11-27 20:17:19] 2025-11-28 00:44:41,381 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 20:17:19] 2025-11-28 00:44:41,381 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 20:17:19] 2025-11-28 00:44:41,491 | INFO     | did not find any defunct processes belonging to 869662
[2025-11-27 20:17:19] 2025-11-28 00:44:41,602 | INFO     | did not find any defunct processes belonging to 869662
[2025-11-27 20:17:19] 2025-11-28 00:44:41,683 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 20:17:19] 2025-11-28 00:44:41,683 | INFO     | ready for new job
[2025-11-27 20:17:19] 2025-11-28 00:44:41,684 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 20:17:19] 2025-11-28 00:44:41,739 | INFO     | ***************************************
[2025-11-27 20:17:19] 2025-11-28 00:44:41,739 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 20:17:19] 2025-11-28 00:44:41,739 | INFO     | ***************************************
[2025-11-27 20:17:19] 2025-11-28 00:44:41,740 | INFO     | 
[2025-11-27 20:17:19] 2025-11-28 00:44:41,746 | INFO     | architecture information:
[2025-11-27 20:17:19] 2025-11-28 00:44:41,747 | INFO     | executing command: cat /etc/os-release
[2025-11-27 20:17:19] 2025-11-28 00:44:41,800 | INFO     | cat /etc/os-release:
[2025-11-27 20:17:19] NAME="CentOS Linux"
[2025-11-27 20:17:19] VERSION="7 (Core)"
[2025-11-27 20:17:19] ID="centos"
[2025-11-27 20:17:19] ID_LIKE="rhel fedora"
[2025-11-27 20:17:19] VERSION_ID="7"
[2025-11-27 20:17:19] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 20:17:19] ANSI_COLOR="0;31"
[2025-11-27 20:17:19] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 20:17:19] HOME_URL="https://www.centos.org/"
[2025-11-27 20:17:19] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 20:17:19] 
[2025-11-27 20:17:19] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 20:17:19] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 20:17:19] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 20:17:19] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 20:17:19] 
[2025-11-27 20:17:19] 2025-11-28 00:44:41,800 | INFO     | ***************************************
[2025-11-27 20:17:19] 2025-11-28 00:44:42,304 | INFO     | executing command: df -mP /tmp/boinchome/slots/3
[2025-11-27 20:17:19] 2025-11-28 00:44:42,354 | INFO     | sufficient remaining disk space (48772415488 B)
[2025-11-27 20:17:19] 2025-11-28 00:44:42,355 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 20:17:19] 2025-11-28 00:44:42,355 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 20:17:19] 2025-11-28 00:44:42,355 | INFO     | update_server=False
[2025-11-27 20:17:19] 2025-11-28 00:44:42,355 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 20:17:19] 2025-11-28 00:44:42,356 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 20:17:19] 2025-11-28 00:44:42,356 | INFO     | aborting loop
[2025-11-27 20:17:19] 2025-11-28 00:44:42,481 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 20:17:19] 2025-11-28 00:44:43,382 | INFO     | all payload control threads have been joined
[2025-11-27 20:17:19] 2025-11-28 00:44:43,389 | INFO     | [job] retrieve thread has finished
[2025-11-27 20:17:19] 2025-11-28 00:44:43,403 | INFO     | [job] job monitor thread has finished
[2025-11-27 20:17:19] 2025-11-28 00:44:43,441 | INFO     | all data control threads have been joined
[2025-11-27 20:17:19] 2025-11-28 00:44:43,744 | INFO     | all job control threads have been joined
[2025-11-27 20:17:19] 2025-11-28 00:44:43,817 | INFO     | [data] copytool_in thread has finished
[2025-11-27 20:17:19] 2025-11-28 00:44:43,839 | INFO     | [job] validate thread has finished
[2025-11-27 20:17:19] 2025-11-28 00:44:43,940 | INFO     | [payload] validate_post thread has finished
[2025-11-27 20:17:19] 2025-11-28 00:44:43,986 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 20:17:19] 2025-11-28 00:44:44,009 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 20:17:19] 2025-11-28 00:44:44,043 | INFO     | [payload] failed_post thread has finished
[2025-11-27 20:17:19] 2025-11-28 00:44:44,236 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 20:17:19] 2025-11-28 00:44:44,387 | INFO     | [payload] control thread has finished
[2025-11-27 20:17:19] 2025-11-28 00:44:44,447 | INFO     | [data] control thread has finished
[2025-11-27 20:17:19] 2025-11-28 00:44:44,511 | INFO     | [data] copytool_out thread has finished
[2025-11-27 20:17:19] 2025-11-28 00:44:44,556 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 20:17:19] 2025-11-28 00:44:44,750 | INFO     | [job] control thread has finished
[2025-11-27 20:17:19] 2025-11-28 00:44:44,790 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 20:17:19] 2025-11-28 00:44:45,005 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 20:17:19] 2025-11-28 00:44:45,270 | INFO     | [job] queue monitor thread has finished
[2025-11-27 20:17:19] 2025-11-28 00:44:49,076 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 20:17:19] 2025-11-28 00:45:12,281 | INFO     | PID=860633 has CPU usage=3.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-27 20:17:19] 2025-11-28 00:45:12,281 | INFO     | .. there are 8 such processes running
[2025-11-27 20:17:19] 2025-11-28 00:45:12,282 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 20:17:19] 2025-11-28 00:45:12,282 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 20:17:19] 2025-11-28 00:45:12,282 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 20:17:19] 2025-11-28 00:45:38,060 | INFO     | [monitor] cgroup control has ended
[2025-11-27 20:17:19] 2025-11-28 00:45:39,891 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139828994455360)>', '<ExcThread(monitor, started 139827810916096)>']
[2025-11-27 20:17:19] 2025-11-28 00:45:40,514 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 20:17:19] 2025-11-28 00:45:40,514 | INFO     | [monitor] control thread has ended
[2025-11-27 20:17:19] 2025-11-28 00:45:44,917 | INFO     | all workflow threads have been joined
[2025-11-27 20:17:19] 2025-11-28 00:45:44,917 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 20:17:19] 2025-11-28 00:45:44,917 | INFO     | traces error code: 0
[2025-11-27 20:17:19] 2025-11-28 00:45:44,918 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 20:17:19] 2025-11-28 00:45:45,416 [wrapper] ==== pilot stdout END ====
[2025-11-27 20:17:19] 2025-11-28 00:45:45,479 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 20:17:19] 2025-11-28 00:45:45,495 [wrapper] pilotpid: 860633
[2025-11-27 20:17:19] 2025-11-28 00:45:45,519 [wrapper] Pilot exit status: 0
[2025-11-27 20:17:19] 2025-11-28 00:45:45,643 [wrapper] pandaids: 6897663404
[2025-11-27 20:17:19] 2025-11-28 00:45:46,196 [wrapper] cleanup supervisor_pilot  365171 860634
[2025-11-27 20:17:19] 2025-11-28 00:45:46,201 [wrapper] Test setup, not cleaning
[2025-11-27 20:17:19] 2025-11-28 00:45:46,204 [wrapper] apfmon messages muted
[2025-11-27 20:17:19] 2025-11-28 00:45:46,208 [wrapper] ==== wrapper stdout END ====
[2025-11-27 20:17:19] 2025-11-28 00:45:46,211 [wrapper] ==== wrapper stderr END ====
[2025-11-27 20:17:19]  *** Error codes and diagnostics ***
[2025-11-27 20:17:19]     "exeErrorCode": 0,
[2025-11-27 20:17:19]     "exeErrorDiag": "",
[2025-11-27 20:17:19]     "pilotErrorCode": 0,
[2025-11-27 20:17:19]     "pilotErrorDiag": "",
[2025-11-27 20:17:19]  *** Listing of results directory ***
[2025-11-27 20:17:19] total 1354892
[2025-11-27 20:17:19] -rw-r--r--. 1 boincer umatlas    576529 Nov 25 11:48 pilot3.tar.gz
[2025-11-27 20:17:19] -rwx------. 1 boincer umatlas     36292 Nov 25 12:01 runpilot2-wrapper.sh
[2025-11-27 20:17:19] -rw-r--r--. 1 boincer umatlas      5112 Nov 25 12:02 queuedata.json
[2025-11-27 20:17:19] -rw-r--r--. 1 boincer umatlas       100 Nov 26 00:03 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 20:17:19] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 26 00:03 run_atlas
[2025-11-27 20:17:19] -rw-r--r--. 1 boincer umatlas       105 Nov 26 00:03 job.xml
[2025-11-27 20:17:19] -rw-r--r--. 2 boincer umatlas 412349293 Nov 26 00:03 EVNT.47483658._002318.pool.root.1
[2025-11-27 20:17:19] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 00:03 start_atlas.sh
[2025-11-27 20:17:19] drwxrwx--x. 2 boincer umatlas      4096 Nov 26 00:03 shared
[2025-11-27 20:17:19] -rw-r--r--. 2 boincer umatlas    590108 Nov 26 00:03 input.tar.gz
[2025-11-27 20:17:19] -rw-r--r--. 1 boincer umatlas         0 Nov 26 00:03 boinc_lockfile
[2025-11-27 20:17:19] -rw-r--r--. 1 boincer umatlas      2786 Nov 26 00:03 pandaJob.out
[2025-11-27 20:17:19] -rw-------. 1 boincer umatlas        57 Nov 26 00:03 setup.sh.local
[2025-11-27 20:17:19] -rw-------. 1 boincer umatlas    991877 Nov 26 00:04 agis_schedconf.cvmfs.json
[2025-11-27 20:17:19] drwx------. 5 boincer umatlas      4096 Nov 26 00:04 pilot3
[2025-11-27 20:17:19] -rw-r--r--. 1 boincer umatlas       534 Nov 27 18:54 boinc_task_state.xml
[2025-11-27 20:17:19] -rw-------. 1 boincer umatlas 923267211 Nov 27 19:42 HITS.47556161._003014.pool.root.1
[2025-11-27 20:17:19] -rw-------. 1 boincer umatlas      1067 Nov 27 19:43 memory_monitor_summary.json
[2025-11-27 20:17:19] -rw-------. 1 boincer umatlas   1516240 Nov 27 19:43 agis_ddmendpoints.agis.ALL.json
[2025-11-27 20:17:19] -rw-------. 1 boincer umatlas   3470208 Nov 27 19:43 log.47556161._003014.job.log.tgz.1
[2025-11-27 20:17:19] -rw-------. 1 boincer umatlas      8626 Nov 27 19:44 heartbeat.json
[2025-11-27 20:17:19] -rw-------. 1 boincer umatlas        95 Nov 27 19:45 pilot_heartbeat.json
[2025-11-27 20:17:19] -rw-------. 1 boincer umatlas      4822 Nov 27 19:45 pilotlog.txt
[2025-11-27 20:17:19] -rw-------. 1 boincer umatlas  20462244 Nov 27 19:45 log.47556161._003014.job.log.1
[2025-11-27 20:17:19] -rw-------. 1 boincer umatlas       353 Nov 27 19:45 output.list
[2025-11-27 20:17:19] -rw-r--r--. 1 boincer umatlas       620 Nov 27 19:45 runtime_log
[2025-11-27 20:17:19] -rw-------. 1 boincer umatlas  23951360 Nov 27 19:45 result.tar.gz
[2025-11-27 20:17:19] -rw-r--r--. 1 boincer umatlas      9344 Nov 27 19:45 runtime_log.err
[2025-11-27 20:17:19] -rw-------. 1 boincer umatlas       665 Nov 27 19:45 77YLDmXbBi8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmOiJKDmcDGVkn.diag
[2025-11-27 20:17:19] -rw-r--r--. 1 boincer umatlas      6662 Nov 27 20:12 init_data.xml
[2025-11-27 20:17:19] -rw-r--r--. 1 boincer umatlas        30 Nov 27 20:17 wrapper_checkpoint.txt
[2025-11-27 20:17:19] -rw-r--r--. 1 boincer umatlas      8192 Nov 27 20:17 boinc_mmap_file
[2025-11-27 20:17:19] -rw-r--r--. 1 boincer umatlas     21812 Nov 27 20:17 stderr.txt
[2025-11-27 20:17:19] HITS file was successfully produced:
[2025-11-27 20:17:19] -rw-------. 1 boincer umatlas 923267211 Nov 27 19:42 shared/HITS.pool.root.1
[2025-11-27 20:17:19]  *** Contents of shared directory: ***
[2025-11-27 20:17:19] total 1328316
[2025-11-27 20:17:19] -rw-r--r--. 2 boincer umatlas 412349293 Nov 26 00:03 ATLAS.root_0
[2025-11-27 20:17:19] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 00:03 start_atlas.sh
[2025-11-27 20:17:19] -rw-r--r--. 2 boincer umatlas    590108 Nov 26 00:03 input.tar.gz
[2025-11-27 20:17:19] -rw-------. 1 boincer umatlas 923267211 Nov 27 19:42 HITS.pool.root.1
[2025-11-27 20:17:19] -rw-------. 1 boincer umatlas  23951360 Nov 27 19:45 result.tar.gz
20:17:21 (856568): run_atlas exited; CPU time 335037.901256
20:17:21 (856568): called boinc_finish(0)

</stderr_txt>
]]>

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