Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
20:40:32 (2379714): wrapper (7.7.26015): starting
20:40:32 (2379714): wrapper: running run_atlas (--nthreads 12)
[2025-11-25 20:40:32] Arguments: --nthreads 12
[2025-11-25 20:40:32] Threads: 12
[2025-11-25 20:40:32] Checking for CVMFS
[2025-11-25 20:40:33] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 20:40:33] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 20:40:33] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 20:40:35] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 20:40:35] 2.11.5.0 2885516 27869 227140 153309 3 590 34980742 45568001 34575 130560 0 253742586 99.756 181065600 10774 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.162:3129 1
[2025-11-25 20:40:35] CVMFS is ok
[2025-11-25 20:40:35] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 20:40:35] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 20:40:35] Further information can be found at the LHC@home message board.
[2025-11-25 20:40:35] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 20:40:35] Checking for apptainer binary...
[2025-11-25 20:40:35] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 20:40:35] Running /usr/bin/apptainer --version
[2025-11-25 20:40:35] apptainer version 1.4.1-1.el9
[2025-11-25 20:40:35] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 20:40:36] wns0089.triumf.lcg
[2025-11-25 20:40:36] apptainer works
[2025-11-25 20:40:36] Set ATHENA_PROC_NUMBER=12
[2025-11-25 20:40:36] Set ATHENA_CORE_NUMBER=12
[2025-11-25 20:40:36] Starting ATLAS job with PandaID=6897863828
[2025-11-25 20:40:36] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 20:49:36]  *** The last 200 lines of the pilot log: ***
[2025-11-25 20:49:36] 2025-11-26 04:49:02,933 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-25 20:49:36] 2025-11-26 04:49:02,934 | WARNING  | wrong length of table data, x=[1764132198.0, 1764132259.0, 1764132320.0, 1764132381.0], y=[1896.0, 477668.0, 875432.0, 822137.0] (must be same and length>=4)
[2025-11-25 20:49:36] 2025-11-26 04:49:02,934 | INFO     | could have reported an average CPU frequency of 2768 MHz (4 samples)
[2025-11-25 20:49:36] 2025-11-26 04:49:02,934 | INFO     | ..............................
[2025-11-25 20:49:36] 2025-11-26 04:49:02,934 | INFO     | . Timing measurements:
[2025-11-25 20:49:36] 2025-11-26 04:49:02,934 | INFO     | . get job = 0 s
[2025-11-25 20:49:36] 2025-11-26 04:49:02,934 | INFO     | . initial setup = 4 s
[2025-11-25 20:49:36] 2025-11-26 04:49:02,935 | INFO     | . payload setup = 28 s
[2025-11-25 20:49:36] 2025-11-26 04:49:02,935 | INFO     | . stage-in = 0 s
[2025-11-25 20:49:36] 2025-11-26 04:49:02,935 | INFO     | . payload execution = 220 s
[2025-11-25 20:49:36] 2025-11-26 04:49:02,935 | INFO     | . stage-out = 1 s
[2025-11-25 20:49:36] 2025-11-26 04:49:02,935 | INFO     | . log creation = 0 s
[2025-11-25 20:49:36] 2025-11-26 04:49:02,935 | INFO     | ..............................
[2025-11-25 20:49:36] 2025-11-26 04:49:02,935 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-25 20:49:36] 2025-11-26 04:49:02,935 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6897863828/pilotlog.txt
[2025-11-25 20:49:36] 2025-11-26 04:49:02,982 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-11-25 20:49:36] - Log from pilotlog.txt -
[2025-11-25 20:49:36] 2025-11-26 04:49:02,925 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6897863828/memory_monitor_summary.json (trf name=prmon)
[2025-11-25 20:49:36] 2025-11-26 04:49:02,932 | INFO     | extracted standard info from prmon json
[2025-11-25 20:49:36] 2025-11-26 04:49:02,933 | INFO     | extracted standard memory fields from prmon json
[2025-11-25 20:49:36] 2025-11-26 04:49:02,933 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-25 20:49:36] 2025-11-26 04:49:02,933 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-25 20:49:36] 2025-11-26 04:49:02,933 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-25 20:49:36] 2025-11-26 04:49:02,934 | WARNING  | wrong length of table data, x=[1764132198.0, 1764132259.0, 1764132320.0, 1764132381.0], y=[1896.0, 477668.0, 875432.0, 822137.0] (must be same and length>=4)
[2025-11-25 20:49:36] 2025-11-26 04:49:02,934 | INFO     | could have reported an average CPU frequency of 2768 MHz (4 samples)
[2025-11-25 20:49:36] 2025-11-26 04:49:02,934 | INFO     | ..............................
[2025-11-25 20:49:36] 2025-11-26 04:49:02,934 | INFO     | . Timing measurements:
[2025-11-25 20:49:36] 2025-11-26 04:49:02,934 | INFO     | . get job = 0 s
[2025-11-25 20:49:36] 2025-11-26 04:49:02,934 | INFO     | . initial setup = 4 s
[2025-11-25 20:49:36] 2025-11-26 04:49:02,935 | INFO     | . payload setup = 28 s
[2025-11-25 20:49:36] 2025-11-26 04:49:02,935 | INFO     | . stage-in = 0 s
[2025-11-25 20:49:36] 2025-11-26 04:49:02,935 | INFO     | . payload execution = 220 s
[2025-11-25 20:49:36] 2025-11-26 04:49:02,935 | INFO     | . stage-out = 1 s
[2025-11-25 20:49:36] 2025-11-26 04:49:02,935 | INFO     | . log creation = 0 s
[2025-11-25 20:49:36] 2025-11-26 04:49:02,935 | INFO     | ..............................
[2025-11-25 20:49:36] 2025-11-26 04:49:02,935 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-25 20:49:36] 2025-11-26 04:49:02,935 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6897863828/pilotlog.txt
[2025-11-25 20:49:36] 2025-11-26 04:49:02,983 | WARNING  | 
[2025-11-25 20:49:36] [begin log extracts]
[2025-11-25 20:49:36] - Log from pilotlog.txt -
[2025-11-25 20:49:36] 2025-11-26 04:49:02,925 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6897863828/memory_monitor_summary.json (trf name=prmon)
[2025-11-25 20:49:36] 2025-11-26 04:49:02,932 | INFO     | extracted standard info from prmon json
[2025-11-25 20:49:36] 2025-11-26 04:49:02,933 | INFO     | extracted standard memory fields from prmon json
[2025-11-25 20:49:36] 2025-11-26 04:49:02,933 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-25 20:49:36] 2025-11-26 04:49:02,933 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-25 20:49:36] 2025-11-26 04:49:02,933 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-25 20:49:36] 2025-11-26 04:49:02,934 | WARNING  | wrong length of table data, x=[1764132198.0, 1764132259.0, 1764132320.0, 1764132381.0], y=[1896.0, 477668.0, 875432.0, 822137.0] (must be same and length>=4)
[2025-11-25 20:49:36] 2025-11-26 04:49:02,934 | INFO     | could have reported an average CPU frequency of 2768 MHz (4 samples)
[2025-11-25 20:49:36] 2025-11-26 04:49:02,934 | INFO     | ..............................
[2025-11-25 20:49:36] 2025-11-26 04:49:02,934 | INFO     | . Timing measurements:
[2025-11-25 20:49:36] 2025-11-26 04:49:02,934 | INFO     | . get job = 0 s
[2025-11-25 20:49:36] 2025-11-26 04:49:02,934 | INFO     | . initial setup = 4 s
[2025-11-25 20:49:36] 2025-11-26 04:49:02,935 | INFO     | . payload setup = 28 s
[2025-11-25 20:49:36] 2025-11-26 04:49:02,935 | INFO     | . stage-in = 0 s
[2025-11-25 20:49:36] 2025-11-26 04:49:02,935 | INFO     | . payload execution = 220 s
[2025-11-25 20:49:36] 2025-11-26 04:49:02,935 | INFO     | . stage-out = 1 s
[2025-11-25 20:49:36] 2025-11-26 04:49:02,935 | INFO     | . log creation = 0 s
[2025-11-25 20:49:36] 2025-11-26 04:49:02,935 | INFO     | ..............................
[2025-11-25 20:49:36] 2025-11-26 04:49:02,935 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-25 20:49:36] 2025-11-26 04:49:02,935 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6897863828/pilotlog.txt
[2025-11-25 20:49:36] [end log extracts]
[2025-11-25 20:49:36] 2025-11-26 04:49:02,983 | WARNING  | pilotErrorCodes = [1305, 1165] (will report primary/first error code)
[2025-11-25 20:49:36] 2025-11-26 04:49:02,983 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2025-11-25 20:49:36] 2025-11-26 04:49:03,521 | INFO     | 
[2025-11-25 20:49:36] 2025-11-26 04:49:03,521 | INFO     | job summary report
[2025-11-25 20:49:36] 2025-11-26 04:49:03,521 | INFO     | --------------------------------------------------
[2025-11-25 20:49:36] 2025-11-26 04:49:03,521 | INFO     | PanDA job id: 6897863828
[2025-11-25 20:49:36] 2025-11-26 04:49:03,521 | INFO     | task id: 47556161
[2025-11-25 20:49:36] 2025-11-26 04:49:03,521 | INFO     | error 1/2: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-11-25 20:46:22,669 CRITICAL Transform executor raised TransformValidationExceptio
[2025-11-25 20:49:36] 2025-11-26 04:49:03,522 | INFO     | error 2/2: 1165: Local output file is missing
[2025-11-25 20:49:36] 2025-11-26 04:49:03,522 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-25 20:49:36] 2025-11-26 04:49:03,522 | INFO     | pilot state: failed 
[2025-11-25 20:49:36] 2025-11-26 04:49:03,522 | INFO     | transexitcode: 65
[2025-11-25 20:49:36] 2025-11-26 04:49:03,522 | INFO     | exeerrorcode: 65
[2025-11-25 20:49:36] 2025-11-26 04:49:03,522 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFL
[2025-11-25 20:49:36] 2025-11-26 04:49:03,522 | INFO     | exitcode: 65
[2025-11-25 20:49:36] 2025-11-26 04:49:03,522 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 
[2025-11-25 20:49:36] 2025-11-26 04:49:03,522 | INFO     | cpuconsumptiontime: 43 s
[2025-11-25 20:49:36] 2025-11-26 04:49:03,522 | INFO     | nevents: 0
[2025-11-25 20:49:36] 2025-11-26 04:49:03,522 | INFO     | neventsw: 0
[2025-11-25 20:49:36] 2025-11-26 04:49:03,522 | INFO     | pid: 2390734
[2025-11-25 20:49:36] 2025-11-26 04:49:03,522 | INFO     | pgrp: 2390734
[2025-11-25 20:49:36] 2025-11-26 04:49:03,522 | INFO     | corecount: 12
[2025-11-25 20:49:36] 2025-11-26 04:49:03,522 | INFO     | event service: False
[2025-11-25 20:49:36] 2025-11-26 04:49:03,522 | INFO     | sizes: {0: 2283437, 1: 2284119, 2: 2284318, 3: 2284346, 14: 2284346, 26: 2284374, 28: 2284792, 36: 2284820, 249: 2310273, 251: 2314563, 254: 2314619, 402: 2315065}
[2025-11-25 20:49:36] 2025-11-26 04:49:03,522 | INFO     | --------------------------------------------------
[2025-11-25 20:49:36] 2025-11-26 04:49:03,522 | INFO     | 
[2025-11-25 20:49:36] 2025-11-26 04:49:03,522 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2025-11-25 20:49:36] 2025-11-26 04:49:03,642 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-25 20:49:36] 2025-11-26 04:49:03,643 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-25 20:49:36] 2025-11-26 04:49:03,643 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-25 20:49:36] 2025-11-26 04:49:03,643 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-25 20:49:36] 2025-11-26 04:49:03,643 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-25 20:49:36] 2025-11-26 04:49:03,643 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-25 20:49:36] 2025-11-26 04:49:03,643 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-25 20:49:36] 2025-11-26 04:49:03,643 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-25 20:49:36] 2025-11-26 04:49:03,643 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-25 20:49:36] 2025-11-26 04:49:03,643 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-25 20:49:36] 2025-11-26 04:49:03,643 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-25 20:49:36] 2025-11-26 04:49:03,643 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-25 20:49:36] 2025-11-26 04:49:03,643 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-25 20:49:36] 2025-11-26 04:49:03,643 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-25 20:49:36] 2025-11-26 04:49:03,643 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-25 20:49:36] 2025-11-26 04:49:03,643 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-25 20:49:36] 2025-11-26 04:49:03,643 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-25 20:49:36] 2025-11-26 04:49:03,644 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-25 20:49:36] 2025-11-26 04:49:03,644 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-25 20:49:36] 2025-11-26 04:49:03,644 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-25 20:49:36] 2025-11-26 04:49:03,644 | INFO     | job 6897863828 has completed (purged errors)
[2025-11-25 20:49:36] 2025-11-26 04:49:03,644 | INFO     | overall cleanup function is called
[2025-11-25 20:49:36] 2025-11-26 04:49:04,695 | INFO     | --- collectZombieJob: --- 10, [2390734]
[2025-11-25 20:49:36] 2025-11-26 04:49:04,695 | INFO     | zombie collector waiting for pid 2390734
[2025-11-25 20:49:36] 2025-11-26 04:49:04,695 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-25 20:49:36] 2025-11-26 04:49:04,695 | INFO     | collected zombie processes
[2025-11-25 20:49:36] 2025-11-26 04:49:04,695 | INFO     | will attempt to kill all subprocesses of pid=2390734
[2025-11-25 20:49:36] 2025-11-26 04:49:05,876 | INFO     | process IDs to be killed: [2390734] (in reverse order)
[2025-11-25 20:49:36] 2025-11-26 04:49:06,233 | WARNING  | found no corresponding commands to process id(s)
[2025-11-25 20:49:36] 2025-11-26 04:49:06,234 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-25 20:49:36] 2025-11-26 04:49:06,264 | INFO     | did not find any defunct processes belonging to 2390734
[2025-11-25 20:49:36] 2025-11-26 04:49:06,287 | INFO     | did not find any defunct processes belonging to 2390734
[2025-11-25 20:49:36] 2025-11-26 04:49:06,288 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-25 20:49:36] 2025-11-26 04:49:06,288 | INFO     | ready for new job
[2025-11-25 20:49:36] 2025-11-26 04:49:06,288 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-25 20:49:36] 2025-11-26 04:49:06,298 | INFO     | ***************************************
[2025-11-25 20:49:36] 2025-11-26 04:49:06,298 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-25 20:49:36] 2025-11-26 04:49:06,298 | INFO     | ***************************************
[2025-11-25 20:49:36] 2025-11-26 04:49:06,298 | INFO     | 
[2025-11-25 20:49:36] 2025-11-26 04:49:06,300 | INFO     | architecture information:
[2025-11-25 20:49:36] 2025-11-26 04:49:06,315 | INFO     | executing command: cat /etc/os-release
[2025-11-25 20:49:36] 2025-11-26 04:49:06,364 | INFO     | cat /etc/os-release:
[2025-11-25 20:49:36] NAME="CentOS Linux"
[2025-11-25 20:49:36] VERSION="7 (Core)"
[2025-11-25 20:49:36] ID="centos"
[2025-11-25 20:49:36] ID_LIKE="rhel fedora"
[2025-11-25 20:49:36] VERSION_ID="7"
[2025-11-25 20:49:36] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-25 20:49:36] ANSI_COLOR="0;31"
[2025-11-25 20:49:36] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-25 20:49:36] HOME_URL="https://www.centos.org/"
[2025-11-25 20:49:36] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-25 20:49:36] 
[2025-11-25 20:49:36] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-25 20:49:36] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-25 20:49:36] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-25 20:49:36] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-25 20:49:36] 
[2025-11-25 20:49:36] 2025-11-26 04:49:06,365 | INFO     | ***************************************
[2025-11-25 20:49:36] 2025-11-26 04:49:06,868 | INFO     | executing command: df -mP /home/boinc/slots/0
[2025-11-25 20:49:36] 2025-11-26 04:49:06,891 | INFO     | sufficient remaining disk space (1802737025024 B)
[2025-11-25 20:49:36] 2025-11-26 04:49:06,892 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-25 20:49:36] 2025-11-26 04:49:06,892 | INFO     | current server update state: UPDATING_FINAL
[2025-11-25 20:49:36] 2025-11-26 04:49:06,892 | INFO     | update_server=False
[2025-11-25 20:49:36] 2025-11-26 04:49:06,892 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 20:49:36] 2025-11-26 04:49:06,893 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 20:49:36] 2025-11-26 04:49:06,893 | INFO     | aborting loop
[2025-11-25 20:49:36] 2025-11-26 04:49:07,294 | INFO     | all data control threads have been joined
[2025-11-25 20:49:36] 2025-11-26 04:49:07,898 | INFO     | [job] retrieve thread has finished
[2025-11-25 20:49:36] 2025-11-26 04:49:07,899 | INFO     | [job] job monitor thread has finished
[2025-11-25 20:49:36] 2025-11-26 04:49:07,974 | INFO     | [data] copytool_in thread has finished
[2025-11-25 20:49:36] 2025-11-26 04:49:07,993 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 20:49:36] 2025-11-26 04:49:08,247 | INFO     | all payload control threads have been joined
[2025-11-25 20:49:36] 2025-11-26 04:49:08,279 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 20:49:36] 2025-11-26 04:49:08,301 | INFO     | [data] control thread has finished
[2025-11-25 20:49:36] 2025-11-26 04:49:08,441 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 20:49:36] 2025-11-26 04:49:08,542 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 20:49:36] 2025-11-26 04:49:08,550 | INFO     | all job control threads have been joined
[2025-11-25 20:49:36] 2025-11-26 04:49:08,582 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 20:49:36] 2025-11-26 04:49:08,820 | INFO     | [payload] validate_post thread has finished
[2025-11-25 20:49:36] 2025-11-26 04:49:09,021 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 20:49:36] 2025-11-26 04:49:09,253 | INFO     | [payload] control thread has finished
[2025-11-25 20:49:36] 2025-11-26 04:49:09,256 | INFO     | [payload] failed_post thread has finished
[2025-11-25 20:49:36] 2025-11-26 04:49:09,397 | INFO     | [job] validate thread has finished
[2025-11-25 20:49:36] 2025-11-26 04:49:09,548 | INFO     | [job] queue monitor thread has finished
[2025-11-25 20:49:36] 2025-11-26 04:49:09,556 | INFO     | [job] control thread has finished
[2025-11-25 20:49:36] 2025-11-26 04:49:09,975 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 20:49:36] 2025-11-26 04:49:10,000 | INFO     | [data] copytool_out thread has finished
[2025-11-25 20:49:36] 2025-11-26 04:49:13,985 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 20:49:36] 2025-11-26 04:49:20,835 | INFO     | [monitor] cgroup control has ended
[2025-11-25 20:49:36] 2025-11-26 04:49:21,246 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140041182967616)>', '<ExcThread(monitor, started 140040789272320)>']
[2025-11-25 20:49:36] 2025-11-26 04:49:26,273 | INFO     | all workflow threads have been joined
[2025-11-25 20:49:36] 2025-11-26 04:49:26,274 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 20:49:36] 2025-11-26 04:49:26,275 | INFO     | traces error code: 0
[2025-11-25 20:49:36] 2025-11-26 04:49:26,275 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 20:49:36] 2025-11-26 04:49:35,297 | INFO     | PID=2383627 has CPU usage=1.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-25 20:49:36] 2025-11-26 04:49:35,297 | INFO     | .. there are 35 such processes running
[2025-11-25 20:49:36] 2025-11-26 04:49:35,298 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 20:49:36] 2025-11-26 04:49:35,298 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 20:49:36] 2025-11-26 04:49:35,298 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 20:49:36] 2025-11-26 04:49:35,298 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 20:49:36] 2025-11-26 04:49:35,298 | INFO     | [monitor] control thread has ended
[2025-11-25 20:49:36] 2025-11-26 04:49:35,486 [wrapper] ==== pilot stdout END ====
[2025-11-25 20:49:36] 2025-11-26 04:49:35,536 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 20:49:36] 2025-11-26 04:49:35,556 [wrapper] pilotpid: 2383627
[2025-11-25 20:49:36] 2025-11-26 04:49:35,580 [wrapper] Pilot exit status: 0
[2025-11-25 20:49:36] 2025-11-26 04:49:35,713 [wrapper] pandaids: 6897863828
[2025-11-25 20:49:36] 2025-11-26 04:49:36,066 [wrapper] cleanup supervisor_pilot 2383633 2383628
[2025-11-25 20:49:36] 2025-11-26 04:49:36,069 [wrapper] Test setup, not cleaning
[2025-11-25 20:49:36] 2025-11-26 04:49:36,071 [wrapper] apfmon messages muted
[2025-11-25 20:49:36] 2025-11-26 04:49:36,072 [wrapper] ==== wrapper stdout END ====
[2025-11-25 20:49:36] 2025-11-26 04:49:36,074 [wrapper] ==== wrapper stderr END ====
[2025-11-25 20:49:36]  *** Error codes and diagnostics ***
[2025-11-25 20:49:36]     "exeErrorCode": 65,
[2025-11-25 20:49:36]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 cannot be opened - STOP\"",
[2025-11-25 20:49:36]     "pilotErrorCode": 1305,
[2025-11-25 20:49:36]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 canno",
[2025-11-25 20:49:36]  *** Listing of results directory ***
[2025-11-25 20:49:36] total 405552
[2025-11-25 20:49:36] -rw-r--r--. 1 boinc boinc    576529 Nov 25 08:48 pilot3.tar.gz
[2025-11-25 20:49:36] -rwx------. 1 boinc boinc     36292 Nov 25 09:01 runpilot2-wrapper.sh
[2025-11-25 20:49:36] -rw-r--r--. 1 boinc boinc      5112 Nov 25 09:02 queuedata.json
[2025-11-25 20:49:36] -rw-r--r--. 1 boinc boinc       100 Nov 25 20:40 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 20:49:36] -rwxr-xr-x. 1 boinc boinc      7986 Nov 25 20:40 run_atlas
[2025-11-25 20:49:36] -rw-r--r--. 1 boinc boinc       105 Nov 25 20:40 job.xml
[2025-11-25 20:49:36] -rw-r--r--. 2 boinc boinc 411026669 Nov 25 20:40 EVNT.47483658._002332.pool.root.1
[2025-11-25 20:49:36] -rw-r--r--. 2 boinc boinc     15847 Nov 25 20:40 start_atlas.sh
[2025-11-25 20:49:36] drwxrwx--x. 2 boinc boinc      4096 Nov 25 20:40 shared
[2025-11-25 20:49:36] -rw-r--r--. 2 boinc boinc    590105 Nov 25 20:40 input.tar.gz
[2025-11-25 20:49:36] -rw-r--r--. 1 boinc boinc      6595 Nov 25 20:40 init_data.xml
[2025-11-25 20:49:36] -rw-r--r--. 1 boinc boinc         0 Nov 25 20:40 boinc_lockfile
[2025-11-25 20:49:36] -rw-r--r--. 1 boinc boinc      2786 Nov 25 20:40 pandaJob.out
[2025-11-25 20:49:36] -rw-------. 1 boinc boinc    991877 Nov 25 20:41 agis_schedconf.cvmfs.json
[2025-11-25 20:49:36] -rw-------. 1 boinc boinc   1516240 Nov 25 20:41 agis_ddmendpoints.agis.ALL.json
[2025-11-25 20:49:36] drwx------. 5 boinc boinc      4096 Nov 25 20:41 pilot3
[2025-11-25 20:49:36] -rw-r--r--. 1 boinc boinc       525 Nov 25 20:45 boinc_task_state.xml
[2025-11-25 20:49:36] -rw-------. 1 boinc boinc      1003 Nov 25 20:46 memory_monitor_summary.json
[2025-11-25 20:49:36] -rw-------. 1 boinc boinc     51561 Nov 25 20:46 log.47556161._003148.job.log.tgz.1
[2025-11-25 20:49:36] -rw-------. 1 boinc boinc     10338 Nov 25 20:49 heartbeat.json
[2025-11-25 20:49:36] -rw-r--r--. 1 boinc boinc        23 Nov 25 20:49 wrapper_checkpoint.txt
[2025-11-25 20:49:36] -rw-r--r--. 1 boinc boinc      8192 Nov 25 20:49 boinc_mmap_file
[2025-11-25 20:49:36] -rw-------. 1 boinc boinc       823 Nov 25 20:49 pilotlog.txt
[2025-11-25 20:49:36] -rw-------. 1 boinc boinc        95 Nov 25 20:49 pilot_heartbeat.json
[2025-11-25 20:49:36] -rw-------. 1 boinc boinc    121759 Nov 25 20:49 log.47556161._003148.job.log.1
[2025-11-25 20:49:36] -rw-------. 1 boinc boinc       186 Nov 25 20:49 output.list
[2025-11-25 20:49:36] -rw-r--r--. 1 boinc boinc       620 Nov 25 20:49 runtime_log
[2025-11-25 20:49:36] -rw-------. 1 boinc boinc    194560 Nov 25 20:49 result.tar.gz
[2025-11-25 20:49:36] -rw-r--r--. 1 boinc boinc      8636 Nov 25 20:49 runtime_log.err
[2025-11-25 20:49:36] -rw-------. 1 boinc boinc       645 Nov 25 20:49 F6QODmXbBi8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmXdMKDmpF1PVn.diag
[2025-11-25 20:49:36] -rw-r--r--. 1 boinc boinc     22683 Nov 25 20:49 stderr.txt
[2025-11-25 20:49:36] No HITS result produced
[2025-11-25 20:49:36]  *** Contents of shared directory: ***
[2025-11-25 20:49:36] total 402188
[2025-11-25 20:49:36] -rw-r--r--. 2 boinc boinc 411026669 Nov 25 20:40 ATLAS.root_0
[2025-11-25 20:49:36] -rw-r--r--. 2 boinc boinc     15847 Nov 25 20:40 start_atlas.sh
[2025-11-25 20:49:36] -rw-r--r--. 2 boinc boinc    590105 Nov 25 20:40 input.tar.gz
[2025-11-25 20:49:36] -rw-------. 1 boinc boinc    194560 Nov 25 20:49 result.tar.gz
20:49:37 (2379714): run_atlas exited; CPU time 53.253963
20:49:37 (2379714): called boinc_finish(0)

</stderr_txt>
]]>

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