Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
23:49:46 (4297): wrapper (7.7.26015): starting
23:49:46 (4297): wrapper: running run_atlas (--nthreads 8)
[2025-11-25 23:49:46] Arguments: --nthreads 8
[2025-11-25 23:49:46] Threads: 8
[2025-11-25 23:49:46] Checking for CVMFS
[2025-11-25 23:49:46] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 23:49:46] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 23:49:46] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 23:49:46] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 23:49:46] 2.11.2.0 2873 59941 86516 153309 1 81 18194112 20275201 1 130560 0 15148497 99.836 3542285 30954 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-25 23:49:46] CVMFS is ok
[2025-11-25 23:49:46] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 23:49:46] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 23:49:46] Further information can be found at the LHC@home message board.
[2025-11-25 23:49:46] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 23:49:46] Checking for apptainer binary...
[2025-11-25 23:49:46] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 23:49:46] Running /usr/bin/apptainer --version
[2025-11-25 23:49:46] apptainer version 1.3.2-1.el7
[2025-11-25 23:49:46] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 23:49:48] c-115-13.aglt2.org
[2025-11-25 23:49:48] apptainer works
[2025-11-25 23:49:48] Set ATHENA_PROC_NUMBER=8
[2025-11-25 23:49:48] Set ATHENA_CORE_NUMBER=8
[2025-11-25 23:49:48] Starting ATLAS job with PandaID=6897661787
[2025-11-25 23:49:48] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 10:56:18]  *** The last 200 lines of the pilot log: ***
[2025-11-26 10:56:18] 2025-11-26 15:55:45,275 | INFO     | time since job start (39940s) is within the limit (172800.0s)
[2025-11-26 10:56:18] 2025-11-26 15:55:46,058 | INFO     | monitor loop #2950: job 0:6897661787 is in state 'finished'
[2025-11-26 10:56:18] 2025-11-26 15:55:46,059 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 10:56:18] 2025-11-26 15:55:46,945 | INFO     | CPU arch script returned: x86-64-v2
[2025-11-26 10:56:18] 2025-11-26 15:55:46,949 | INFO     | found 8 cores (4 cores per socket, 2 sockets) , CPU MHz: 1712.5
[2025-11-26 10:56:18] 2025-11-26 15:55:46,951 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6897661787/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 10:56:18] 2025-11-26 15:55:46,953 | INFO     | extracted standard info from prmon json
[2025-11-26 10:56:18] 2025-11-26 15:55:46,953 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 10:56:18] 2025-11-26 15:55:46,953 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 10:56:18] 2025-11-26 15:55:46,963 | INFO     | fitting pss+swap vs Time
[2025-11-26 10:56:18] 2025-11-26 15:55:46,963 | INFO     | sum of square deviations: 87136171302.72679
[2025-11-26 10:56:18] 2025-11-26 15:55:46,971 | INFO     | sum of deviations: 669867175843.4768
[2025-11-26 10:56:18] 2025-11-26 15:55:46,972 | INFO     | mean x: 1764152583.567939
[2025-11-26 10:56:18] 2025-11-26 15:55:46,972 | INFO     | mean y: 3105970.7083969465
[2025-11-26 10:56:18] 2025-11-26 15:55:46,972 | INFO     | intersect: -13558976127.27618
[2025-11-26 10:56:18] 2025-11-26 15:55:46,972 | INFO     | chi2: 6.0642276234671915
[2025-11-26 10:56:18] 2025-11-26 15:55:46,973 | INFO     | sum of square deviations: 85155977863.60068
[2025-11-26 10:56:18] 2025-11-26 15:55:46,981 | INFO     | sum of deviations: 900121942804.9806
[2025-11-26 10:56:18] 2025-11-26 15:55:46,981 | INFO     | mean x: 1764152431.0723076
[2025-11-26 10:56:18] 2025-11-26 15:55:46,981 | INFO     | mean y: 3123690.66
[2025-11-26 10:56:18] 2025-11-26 15:55:46,981 | INFO     | intersect: -18644449310.080494
[2025-11-26 10:56:18] 2025-11-26 15:55:46,982 | INFO     | chi2: 2.9971395364896662
[2025-11-26 10:56:18] 2025-11-26 15:55:46,982 | INFO     | current chi2=2.9971395364896662 (change=50.57673091142863 %)
[2025-11-26 10:56:18] 2025-11-26 15:55:46,983 | INFO     | sum of square deviations: 83206017549.45099
[2025-11-26 10:56:18] 2025-11-26 15:55:46,991 | INFO     | sum of deviations: 977630403416.6001
[2025-11-26 10:56:18] 2025-11-26 15:55:46,991 | INFO     | mean x: 1764152278.576744
[2025-11-26 10:56:18] 2025-11-26 15:55:46,991 | INFO     | mean y: 3129744.2
[2025-11-26 10:56:18] 2025-11-26 15:55:46,992 | INFO     | intersect: -20724805020.473476
[2025-11-26 10:56:18] 2025-11-26 15:55:46,992 | INFO     | chi2: 2.5280218636289247
[2025-11-26 10:56:18] 2025-11-26 15:55:46,992 | INFO     | current chi2=2.5280218636289247 (change=15.652179925202459 %)
[2025-11-26 10:56:18] 2025-11-26 15:55:46,992 | INFO     | right removable region: 644
[2025-11-26 10:56:18] 2025-11-26 15:55:46,993 | INFO     | sum of square deviations: 85155750943.6007
[2025-11-26 10:56:18] 2025-11-26 15:55:47,001 | INFO     | sum of deviations: 473386191998.8488
[2025-11-26 10:56:18] 2025-11-26 15:55:47,001 | INFO     | mean x: 1764152736.0723076
[2025-11-26 10:56:18] 2025-11-26 15:55:47,001 | INFO     | mean y: 3121071.513846154
[2025-11-26 10:56:18] 2025-11-26 15:55:47,001 | INFO     | intersect: -9803915289.268528
[2025-11-26 10:56:18] 2025-11-26 15:55:47,002 | INFO     | chi2: 3.7210601036496724
[2025-11-26 10:56:18] 2025-11-26 15:55:47,002 | INFO     | current chi2=3.7210601036496724 (change=38.639174933836415 %)
[2025-11-26 10:56:18] 2025-11-26 15:55:47,003 | INFO     | sum of square deviations: 83205682415.89769
[2025-11-26 10:56:18] 2025-11-26 15:55:47,011 | INFO     | sum of deviations: 433696936654.0041
[2025-11-26 10:56:18] 2025-11-26 15:55:47,011 | INFO     | mean x: 1764152888.572093
[2025-11-26 10:56:18] 2025-11-26 15:55:47,011 | INFO     | mean y: 3124172.3224806204
[2025-11-26 10:56:18] 2025-11-26 15:55:47,011 | INFO     | intersect: -9192253851.725119
[2025-11-26 10:56:18] 2025-11-26 15:55:47,012 | INFO     | chi2: 3.679154056530807
[2025-11-26 10:56:18] 2025-11-26 15:55:47,012 | INFO     | current chi2=3.679154056530807 (change=1.1261857092220349 %)
[2025-11-26 10:56:18] 2025-11-26 15:55:47,012 | INFO     | left removable region: 20
[2025-11-26 10:56:18] 2025-11-26 15:55:47,013 | INFO     | sum of square deviations: 75340485271.66656
[2025-11-26 10:56:18] 2025-11-26 15:55:47,020 | INFO     | sum of deviations: 704974329553.2502
[2025-11-26 10:56:18] 2025-11-26 15:55:47,020 | INFO     | mean x: 1764152858.0833333
[2025-11-26 10:56:18] 2025-11-26 15:55:47,020 | INFO     | mean y: 3152391.6875
[2025-11-26 10:56:18] 2025-11-26 15:55:47,020 | INFO     | intersect: -16504339879.860981
[2025-11-26 10:56:18] 2025-11-26 15:55:47,021 | INFO     | chi2: 0.09366030683209792
[2025-11-26 10:56:18] 2025-11-26 15:55:47,021 | INFO     | current memory leak: 9.36 B/s (using 624 data points, chi2=0.09)
[2025-11-26 10:56:18] 2025-11-26 15:55:47,021 | INFO     | could have reported an average CPU frequency of 2388 MHz (25 samples)
[2025-11-26 10:56:18] 2025-11-26 15:55:47,022 | INFO     | ..............................
[2025-11-26 10:56:18] 2025-11-26 15:55:47,022 | INFO     | . Timing measurements:
[2025-11-26 10:56:18] 2025-11-26 15:55:47,022 | INFO     | . get job = 0 s
[2025-11-26 10:56:18] 2025-11-26 15:55:47,022 | INFO     | . initial setup = 2 s
[2025-11-26 10:56:18] 2025-11-26 15:55:47,022 | INFO     | . payload setup = 8 s
[2025-11-26 10:56:18] 2025-11-26 15:55:47,022 | INFO     | . stage-in = 0 s
[2025-11-26 10:56:18] 2025-11-26 15:55:47,022 | INFO     | . payload execution = 39901 s
[2025-11-26 10:56:18] 2025-11-26 15:55:47,022 | INFO     | . stage-out = 3 s
[2025-11-26 10:56:18] 2025-11-26 15:55:47,022 | INFO     | . log creation = 0 s
[2025-11-26 10:56:18] 2025-11-26 15:55:47,023 | INFO     | ..............................
[2025-11-26 10:56:18] 2025-11-26 15:55:47,153 | INFO     | 
[2025-11-26 10:56:18] 2025-11-26 15:55:47,153 | INFO     | job summary report
[2025-11-26 10:56:18] 2025-11-26 15:55:47,153 | INFO     | --------------------------------------------------
[2025-11-26 10:56:18] 2025-11-26 15:55:47,154 | INFO     | PanDA job id: 6897661787
[2025-11-26 10:56:18] 2025-11-26 15:55:47,154 | INFO     | task id: 47556161
[2025-11-26 10:56:18] 2025-11-26 15:55:47,154 | INFO     | errors: (none)
[2025-11-26 10:56:18] 2025-11-26 15:55:47,154 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 10:56:18] 2025-11-26 15:55:47,154 | INFO     | pilot state: finished 
[2025-11-26 10:56:18] 2025-11-26 15:55:47,155 | INFO     | transexitcode: 0
[2025-11-26 10:56:18] 2025-11-26 15:55:47,155 | INFO     | exeerrorcode: 0
[2025-11-26 10:56:18] 2025-11-26 15:55:47,155 | INFO     | exeerrordiag: 
[2025-11-26 10:56:18] 2025-11-26 15:55:47,155 | INFO     | exitcode: 0
[2025-11-26 10:56:18] 2025-11-26 15:55:47,155 | INFO     | exitmsg: OK
[2025-11-26 10:56:18] 2025-11-26 15:55:47,155 | INFO     | cpuconsumptiontime: 309576 s
[2025-11-26 10:56:18] 2025-11-26 15:55:47,156 | INFO     | nevents: 1000
[2025-11-26 10:56:18] 2025-11-26 15:55:47,156 | INFO     | neventsw: 0
[2025-11-26 10:56:18] 2025-11-26 15:55:47,156 | INFO     | pid: 16376
[2025-11-26 10:56:18] 2025-11-26 15:55:47,156 | INFO     | pgrp: 16376
[2025-11-26 10:56:18] 2025-11-26 15:55:47,156 | INFO     | corecount: 8
[2025-11-26 10:56:18] 2025-11-26 15:55:47,156 | INFO     | event service: False
[2025-11-26 10:56:18] 2025-11-26 15:55:47,157 | INFO     | sizes: {0: 2284038, 1: 2284293, 6: 2284555, 12: 2284583, 39913: 2328089, 39917: 2337083, 39919: 2337267, 39925: 2337577}
[2025-11-26 10:56:18] 2025-11-26 15:55:47,157 | INFO     | --------------------------------------------------
[2025-11-26 10:56:18] 2025-11-26 15:55:47,157 | INFO     | 
[2025-11-26 10:56:18] 2025-11-26 15:55:47,157 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-26 10:56:18] 2025-11-26 15:55:47,184 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 10:56:18] 2025-11-26 15:55:47,185 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 10:56:18] 2025-11-26 15:55:47,185 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 10:56:18] 2025-11-26 15:55:47,185 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 10:56:18] 2025-11-26 15:55:47,185 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 10:56:18] 2025-11-26 15:55:47,186 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 10:56:18] 2025-11-26 15:55:47,186 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 10:56:18] 2025-11-26 15:55:47,186 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 10:56:18] 2025-11-26 15:55:47,186 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 10:56:18] 2025-11-26 15:55:47,186 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 10:56:18] 2025-11-26 15:55:47,187 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 10:56:18] 2025-11-26 15:55:47,187 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 10:56:18] 2025-11-26 15:55:47,187 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 10:56:18] 2025-11-26 15:55:47,187 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 10:56:18] 2025-11-26 15:55:47,188 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 10:56:18] 2025-11-26 15:55:47,188 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 10:56:18] 2025-11-26 15:55:47,188 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 10:56:18] 2025-11-26 15:55:47,188 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 10:56:18] 2025-11-26 15:55:47,188 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 10:56:18] 2025-11-26 15:55:47,189 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 10:56:18] 2025-11-26 15:55:47,189 | INFO     | job 6897661787 has completed (purged errors)
[2025-11-26 10:56:18] 2025-11-26 15:55:47,189 | INFO     | overall cleanup function is called
[2025-11-26 10:56:18] 2025-11-26 15:55:48,205 | INFO     | --- collectZombieJob: --- 10, [16376]
[2025-11-26 10:56:18] 2025-11-26 15:55:48,206 | INFO     | zombie collector waiting for pid 16376
[2025-11-26 10:56:18] 2025-11-26 15:55:48,206 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 10:56:18] 2025-11-26 15:55:48,207 | INFO     | collected zombie processes
[2025-11-26 10:56:18] 2025-11-26 15:55:48,207 | INFO     | will attempt to kill all subprocesses of pid=16376
[2025-11-26 10:56:18] 2025-11-26 15:55:48,294 | INFO     | process IDs to be killed: [16376] (in reverse order)
[2025-11-26 10:56:18] 2025-11-26 15:55:48,347 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 10:56:18] 2025-11-26 15:55:48,348 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 10:56:18] 2025-11-26 15:55:48,353 | INFO     | did not find any defunct processes belonging to 16376
[2025-11-26 10:56:18] 2025-11-26 15:55:48,355 | INFO     | did not find any defunct processes belonging to 16376
[2025-11-26 10:56:18] 2025-11-26 15:55:48,358 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 10:56:18] 2025-11-26 15:55:48,358 | INFO     | ready for new job
[2025-11-26 10:56:18] 2025-11-26 15:55:48,358 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 10:56:18] 2025-11-26 15:55:48,361 | INFO     | ***************************************
[2025-11-26 10:56:18] 2025-11-26 15:55:48,362 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 10:56:18] 2025-11-26 15:55:48,362 | INFO     | ***************************************
[2025-11-26 10:56:18] 2025-11-26 15:55:48,362 | INFO     | 
[2025-11-26 10:56:18] 2025-11-26 15:55:48,362 | INFO     | architecture information:
[2025-11-26 10:56:18] 2025-11-26 15:55:48,363 | INFO     | executing command: cat /etc/os-release
[2025-11-26 10:56:18] 2025-11-26 15:55:48,380 | INFO     | cat /etc/os-release:
[2025-11-26 10:56:18] NAME="CentOS Linux"
[2025-11-26 10:56:18] VERSION="7 (Core)"
[2025-11-26 10:56:18] ID="centos"
[2025-11-26 10:56:18] ID_LIKE="rhel fedora"
[2025-11-26 10:56:18] VERSION_ID="7"
[2025-11-26 10:56:18] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 10:56:18] ANSI_COLOR="0;31"
[2025-11-26 10:56:18] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 10:56:18] HOME_URL="https://www.centos.org/"
[2025-11-26 10:56:18] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 10:56:18] 
[2025-11-26 10:56:18] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 10:56:18] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 10:56:18] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 10:56:18] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 10:56:18] 
[2025-11-26 10:56:18] 2025-11-26 15:55:48,381 | INFO     | ***************************************
[2025-11-26 10:56:18] 2025-11-26 15:55:48,884 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-26 10:56:18] 2025-11-26 15:55:48,904 | INFO     | sufficient remaining disk space (17469276160 B)
[2025-11-26 10:56:18] 2025-11-26 15:55:48,905 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 10:56:18] 2025-11-26 15:55:48,905 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 10:56:18] 2025-11-26 15:55:48,905 | INFO     | update_server=False
[2025-11-26 10:56:18] 2025-11-26 15:55:48,906 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 10:56:18] 2025-11-26 15:55:48,906 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 10:56:18] 2025-11-26 15:55:49,120 | INFO     | all data control threads have been joined
[2025-11-26 10:56:18] 2025-11-26 15:55:49,273 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 10:56:18] 2025-11-26 15:55:49,413 | INFO     | all payload control threads have been joined
[2025-11-26 10:56:18] 2025-11-26 15:55:49,572 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 10:56:18] 2025-11-26 15:55:49,572 | INFO     | aborting loop
[2025-11-26 10:56:18] 2025-11-26 15:55:49,607 | INFO     | all job control threads have been joined
[2025-11-26 10:56:18] 2025-11-26 15:55:49,911 | INFO     | [job] retrieve thread has finished
[2025-11-26 10:56:18] 2025-11-26 15:55:49,912 | INFO     | [job] queue monitor thread has finished
[2025-11-26 10:56:18] 2025-11-26 15:55:50,091 | INFO     | [payload] failed_post thread has finished
[2025-11-26 10:56:18] 2025-11-26 15:55:50,127 | INFO     | [data] control thread has finished
[2025-11-26 10:56:18] 2025-11-26 15:55:50,260 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 10:56:18] 2025-11-26 15:55:50,418 | INFO     | [payload] control thread has finished
[2025-11-26 10:56:18] 2025-11-26 15:55:50,578 | INFO     | [job] job monitor thread has finished
[2025-11-26 10:56:18] 2025-11-26 15:55:50,611 | INFO     | [job] control thread has finished
[2025-11-26 10:56:18] 2025-11-26 15:55:50,658 | INFO     | [payload] validate_post thread has finished
[2025-11-26 10:56:18] 2025-11-26 15:55:50,833 | INFO     | [job] validate thread has finished
[2025-11-26 10:56:18] 2025-11-26 15:55:50,835 | INFO     | [data] copytool_in thread has finished
[2025-11-26 10:56:18] 2025-11-26 15:55:50,876 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 10:56:18] 2025-11-26 15:55:50,937 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 10:56:18] 2025-11-26 15:55:51,279 | INFO     | [data] copytool_out thread has finished
[2025-11-26 10:56:18] 2025-11-26 15:55:51,896 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 10:56:18] 2025-11-26 15:55:55,902 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 10:56:18] 2025-11-26 15:55:59,391 | INFO     | job.realtimelogging is not enabled
[2025-11-26 10:56:18] 2025-11-26 15:56:00,397 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 10:56:18] 2025-11-26 15:56:10,653 | INFO     | [monitor] cgroup control has ended
[2025-11-26 10:56:18] 2025-11-26 15:56:11,901 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140169577895744)>', '<ExcThread(monitor, started 140168958809856)>']
[2025-11-26 10:56:18] 2025-11-26 15:56:16,926 | INFO     | all workflow threads have been joined
[2025-11-26 10:56:18] 2025-11-26 15:56:16,926 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 10:56:18] 2025-11-26 15:56:16,927 | INFO     | traces error code: 0
[2025-11-26 10:56:18] 2025-11-26 15:56:16,927 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 10:56:18] 2025-11-26 15:56:18,486 | INFO     | PID=8118 has CPU usage=2.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-11-26 10:56:18] 2025-11-26 15:56:18,487 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 10:56:18] 2025-11-26 15:56:18,487 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 10:56:18] 2025-11-26 15:56:18,487 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 10:56:18] 2025-11-26 15:56:18,488 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 10:56:18] 2025-11-26 15:56:18,488 | INFO     | [monitor] control thread has ended
[2025-11-26 10:56:18] 2025-11-26 15:56:18,589 [wrapper] ==== pilot stdout END ====
[2025-11-26 10:56:18] 2025-11-26 15:56:18,595 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 10:56:18] 2025-11-26 15:56:18,600 [wrapper] pilotpid: 8118
[2025-11-26 10:56:18] 2025-11-26 15:56:18,605 [wrapper] Pilot exit status: 0
[2025-11-26 10:56:18] 2025-11-26 15:56:18,623 [wrapper] pandaids: 6897661787
[2025-11-26 10:56:18] 2025-11-26 15:56:18,668 [wrapper] cleanup supervisor_pilot  4458 8120
[2025-11-26 10:56:18] 2025-11-26 15:56:18,673 [wrapper] Test setup, not cleaning
[2025-11-26 10:56:18] 2025-11-26 15:56:18,678 [wrapper] apfmon messages muted
[2025-11-26 10:56:18] 2025-11-26 15:56:18,683 [wrapper] ==== wrapper stdout END ====
[2025-11-26 10:56:18] 2025-11-26 15:56:18,687 [wrapper] ==== wrapper stderr END ====
[2025-11-26 10:56:18]  *** Error codes and diagnostics ***
[2025-11-26 10:56:18]     "exeErrorCode": 0,
[2025-11-26 10:56:18]     "exeErrorDiag": "",
[2025-11-26 10:56:18]     "pilotErrorCode": 0,
[2025-11-26 10:56:18]     "pilotErrorDiag": "",
[2025-11-26 10:56:18]  *** Listing of results directory ***
[2025-11-26 10:56:18] total 1313408
[2025-11-26 10:56:18] -rw-r--r-- 1 boincer umatlas    576529 Nov 25 11:48 pilot3.tar.gz
[2025-11-26 10:56:18] -rwx------ 1 boincer umatlas     36292 Nov 25 12:01 runpilot2-wrapper.sh
[2025-11-26 10:56:18] -rw-r--r-- 1 boincer umatlas      5112 Nov 25 12:02 queuedata.json
[2025-11-26 10:56:18] -rw-r--r-- 1 boincer umatlas       100 Nov 25 23:49 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 10:56:18] -rwxr-xr-x 1 boincer umatlas      7986 Nov 25 23:49 run_atlas
[2025-11-26 10:56:18] -rw-r--r-- 1 boincer umatlas       105 Nov 25 23:49 job.xml
[2025-11-26 10:56:18] -rw-r--r-- 2 boincer umatlas 411033733 Nov 25 23:49 EVNT.47483658._002316.pool.root.1
[2025-11-26 10:56:18] -rw-r--r-- 2 boincer umatlas     15847 Nov 25 23:49 start_atlas.sh
[2025-11-26 10:56:18] drwxrwx--x 2 boincer umatlas      4096 Nov 25 23:49 shared
[2025-11-26 10:56:18] -rw-r--r-- 2 boincer umatlas    590106 Nov 25 23:49 input.tar.gz
[2025-11-26 10:56:18] -rw-r--r-- 1 boincer umatlas         0 Nov 25 23:49 boinc_lockfile
[2025-11-26 10:56:18] -rw-r--r-- 1 boincer umatlas      2786 Nov 25 23:49 pandaJob.out
[2025-11-26 10:56:18] -rw------- 1 boincer umatlas        57 Nov 25 23:49 setup.sh.local
[2025-11-26 10:56:18] -rw------- 1 boincer umatlas    991877 Nov 25 23:50 agis_schedconf.cvmfs.json
[2025-11-26 10:56:18] drwx------ 5 boincer umatlas      4096 Nov 25 23:50 pilot3
[2025-11-26 10:56:18] -rw-r--r-- 1 boincer umatlas       533 Nov 26 10:45 boinc_task_state.xml
[2025-11-26 10:56:18] -rw------- 1 boincer umatlas 915131236 Nov 26 10:55 HITS.47556161._002995.pool.root.1
[2025-11-26 10:56:18] -rw-r--r-- 1 boincer umatlas      5913 Nov 26 10:55 init_data.xml
[2025-11-26 10:56:18] -rw------- 1 boincer umatlas      1063 Nov 26 10:55 memory_monitor_summary.json
[2025-11-26 10:56:18] -rw------- 1 boincer umatlas   1516240 Nov 26 10:55 agis_ddmendpoints.agis.ALL.json
[2025-11-26 10:56:18] -rw------- 1 boincer umatlas   1911516 Nov 26 10:55 log.47556161._002995.job.log.tgz.1
[2025-11-26 10:56:18] -rw------- 1 boincer umatlas      8662 Nov 26 10:55 heartbeat.json
[2025-11-26 10:56:18] -rw-r--r-- 1 boincer umatlas        29 Nov 26 10:56 wrapper_checkpoint.txt
[2025-11-26 10:56:18] -rw-r--r-- 1 boincer umatlas      8192 Nov 26 10:56 boinc_mmap_file
[2025-11-26 10:56:18] -rw------- 1 boincer umatlas       744 Nov 26 10:56 pilotlog.txt
[2025-11-26 10:56:18] -rw------- 1 boincer umatlas        95 Nov 26 10:56 pilot_heartbeat.json
[2025-11-26 10:56:18] -rw------- 1 boincer umatlas   5511059 Nov 26 10:56 log.47556161._002995.job.log.1
[2025-11-26 10:56:18] -rw------- 1 boincer umatlas       353 Nov 26 10:56 output.list
[2025-11-26 10:56:18] -rw-r--r-- 1 boincer umatlas       620 Nov 26 10:56 runtime_log
[2025-11-26 10:56:18] -rw------- 1 boincer umatlas   7444480 Nov 26 10:56 result.tar.gz
[2025-11-26 10:56:18] -rw-r--r-- 1 boincer umatlas      9343 Nov 26 10:56 runtime_log.err
[2025-11-26 10:56:18] -rw------- 1 boincer umatlas       668 Nov 26 10:56 iA4KDmXbBi8n9Rq4apOajLDm4fhM0noT9bVo0NGKDm9hJKDmVLOg2n.diag
[2025-11-26 10:56:18] -rw-r--r-- 1 boincer umatlas     21258 Nov 26 10:56 stderr.txt
[2025-11-26 10:56:18] HITS file was successfully produced:
[2025-11-26 10:56:18] -rw------- 1 boincer umatlas 915131236 Nov 26 10:55 shared/HITS.pool.root.1
[2025-11-26 10:56:18]  *** Contents of shared directory: ***
[2025-11-26 10:56:18] total 1302960
[2025-11-26 10:56:18] -rw-r--r-- 2 boincer umatlas 411033733 Nov 25 23:49 ATLAS.root_0
[2025-11-26 10:56:18] -rw-r--r-- 2 boincer umatlas     15847 Nov 25 23:49 start_atlas.sh
[2025-11-26 10:56:18] -rw-r--r-- 2 boincer umatlas    590106 Nov 25 23:49 input.tar.gz
[2025-11-26 10:56:18] -rw------- 1 boincer umatlas 915131236 Nov 26 10:55 HITS.pool.root.1
[2025-11-26 10:56:18] -rw------- 1 boincer umatlas   7444480 Nov 26 10:56 result.tar.gz
10:56:20 (4297): run_atlas exited; CPU time 307155.584240
10:56:20 (4297): called boinc_finish(0)

</stderr_txt>
]]>

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