Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:03:43 (3273385): wrapper (7.7.26015): starting
00:03:43 (3273385): wrapper: running run_atlas (--nthreads 9)
[2025-11-26 00:03:43] Arguments: --nthreads 9
[2025-11-26 00:03:43] Threads: 9
[2025-11-26 00:03:43] Checking for CVMFS
[2025-11-26 00:03:43] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 00:03:44] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 00:03:44] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 00:03:45] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 00:03:45] 2.13.2.0 6969 36267 243744 153309 1 540 32015342 40960000 23502 16776704 0 104076741 99.616 94197801 35788 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-26 00:03:45] CVMFS is ok
[2025-11-26 00:03:45] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 00:03:45] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 00:03:45] Further information can be found at the LHC@home message board.
[2025-11-26 00:03:45] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 00:03:45] Checking for apptainer binary...
[2025-11-26 00:03:45] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 00:03:45] Running /usr/bin/apptainer --version
[2025-11-26 00:03:45] apptainer version 1.4.4-1.el9
[2025-11-26 00:03:45] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 00:03:45] c-212-14.aglt2.org
[2025-11-26 00:03:45] apptainer works
[2025-11-26 00:03:46] Set ATHENA_PROC_NUMBER=9
[2025-11-26 00:03:46] Set ATHENA_CORE_NUMBER=9
[2025-11-26 00:03:46] Starting ATLAS job with PandaID=6897661779
[2025-11-26 00:03:46] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 10:46:59]  *** The last 200 lines of the pilot log: ***
[2025-11-27 10:46:59] 2025-11-27 15:46:21,716 | INFO     | monitor loop #7908: job 0:6897661779 is in state 'finished'
[2025-11-27 10:46:59] 2025-11-27 15:46:21,717 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 10:46:59] 2025-11-27 15:46:23,340 | INFO     | time since job start (124931s) is within the limit (172800.0s)
[2025-11-27 10:46:59] 2025-11-27 15:46:24,220 | INFO     | monitor loop #7909: job 0:6897661779 is in state 'finished'
[2025-11-27 10:46:59] 2025-11-27 15:46:24,221 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 10:46:59] 2025-11-27 15:46:24,870 | INFO     | PID=3277310 has CPU usage=17.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-11-27 10:46:59] 2025-11-27 15:46:24,870 | INFO     | .. there are 25 such processes running
[2025-11-27 10:46:59] 2025-11-27 15:46:25,870 | INFO     | time since job start (124933s) is within the limit (172800.0s)
[2025-11-27 10:46:59] 2025-11-27 15:46:26,056 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-27 10:46:59] 2025-11-27 15:46:26,062 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 3018.5448749999996
[2025-11-27 10:46:59] 2025-11-27 15:46:26,077 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6897661779/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 10:46:59] 2025-11-27 15:46:26,077 | INFO     | extracted standard info from prmon json
[2025-11-27 10:46:59] 2025-11-27 15:46:26,077 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 10:46:59] 2025-11-27 15:46:26,077 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 10:46:59] 2025-11-27 15:46:26,100 | INFO     | fitting pss+swap vs Time
[2025-11-27 10:46:59] 2025-11-27 15:46:26,102 | INFO     | sum of square deviations: 2659926426896.5034
[2025-11-27 10:46:59] 2025-11-27 15:46:26,184 | INFO     | sum of deviations: 17692235999010.45
[2025-11-27 10:46:59] 2025-11-27 15:46:26,185 | INFO     | mean x: 1764195920.344895
[2025-11-27 10:46:59] 2025-11-27 15:46:26,185 | INFO     | mean y: 2973904.332193454
[2025-11-27 10:46:59] 2025-11-27 15:46:26,187 | INFO     | intersect: -11731399744.359629
[2025-11-27 10:46:59] 2025-11-27 15:46:26,189 | INFO     | chi2: 13.487375230987915
[2025-11-27 10:46:59] 2025-11-27 15:46:26,191 | INFO     | sum of square deviations: 2640486998194.3813
[2025-11-27 10:46:59] 2025-11-27 15:46:26,281 | INFO     | sum of deviations: 18372970659735.664
[2025-11-27 10:46:59] 2025-11-27 15:46:26,281 | INFO     | mean x: 1764195767.8555338
[2025-11-27 10:46:59] 2025-11-27 15:46:26,281 | INFO     | mean y: 2979243.680215475
[2025-11-27 10:46:59] 2025-11-27 15:46:26,282 | INFO     | intersect: -12272603670.761164
[2025-11-27 10:46:59] 2025-11-27 15:46:26,283 | INFO     | chi2: 10.406555417519122
[2025-11-27 10:46:59] 2025-11-27 15:46:26,283 | INFO     | current chi2=10.406555417519122 (change=22.842248849060386 %)
[2025-11-27 10:46:59] 2025-11-27 15:46:26,283 | INFO     | right removable region: 2041
[2025-11-27 10:46:59] 2025-11-27 15:46:26,285 | INFO     | sum of square deviations: 2640481572854.3784
[2025-11-27 10:46:59] 2025-11-27 15:46:26,364 | INFO     | sum of deviations: 16907405620237.344
[2025-11-27 10:46:59] 2025-11-27 15:46:26,365 | INFO     | mean x: 1764196072.8555338
[2025-11-27 10:46:59] 2025-11-27 15:46:26,365 | INFO     | mean y: 2980059.153770813
[2025-11-27 10:46:59] 2025-11-27 15:46:26,365 | INFO     | intersect: -11293436058.287283
[2025-11-27 10:46:59] 2025-11-27 15:46:26,367 | INFO     | chi2: 10.030305599131252
[2025-11-27 10:46:59] 2025-11-27 15:46:26,367 | INFO     | current chi2=10.030305599131252 (change=25.631893327278938 %)
[2025-11-27 10:46:59] 2025-11-27 15:46:26,369 | INFO     | sum of square deviations: 2621131697336.7954
[2025-11-27 10:46:59] 2025-11-27 15:46:26,451 | INFO     | sum of deviations: 16231797791458.498
[2025-11-27 10:46:59] 2025-11-27 15:46:26,452 | INFO     | mean x: 1764196225.3662248
[2025-11-27 10:46:59] 2025-11-27 15:46:26,452 | INFO     | mean y: 2985382.8934707902
[2025-11-27 10:46:59] 2025-11-27 15:46:26,452 | INFO     | intersect: -10922095727.565279
[2025-11-27 10:46:59] 2025-11-27 15:46:26,454 | INFO     | chi2: 7.559371690564041
[2025-11-27 10:46:59] 2025-11-27 15:46:26,454 | INFO     | current chi2=7.559371690564041 (change=24.63468220530812 %)
[2025-11-27 10:46:59] 2025-11-27 15:46:26,454 | INFO     | left removable region: 20
[2025-11-27 10:46:59] 2025-11-27 15:46:26,456 | INFO     | sum of square deviations: 2559854152885.359
[2025-11-27 10:46:59] 2025-11-27 15:46:26,541 | INFO     | sum of deviations: 15911614230499.44
[2025-11-27 10:46:59] 2025-11-27 15:46:26,541 | INFO     | mean x: 1764196347.4007916
[2025-11-27 10:46:59] 2025-11-27 15:46:26,542 | INFO     | mean y: 2999749.9599208315
[2025-11-27 10:46:59] 2025-11-27 15:46:26,542 | INFO     | intersect: -10962942069.442911
[2025-11-27 10:46:59] 2025-11-27 15:46:26,543 | INFO     | chi2: 1.6835292917888247
[2025-11-27 10:46:59] 2025-11-27 15:46:26,543 | INFO     | current memory leak: 6.22 B/s (using 2021 data points, chi2=1.68)
[2025-11-27 10:46:59] 2025-11-27 15:46:26,545 | INFO     | could have reported an average CPU frequency of 3055 MHz (72 samples)
[2025-11-27 10:46:59] 2025-11-27 15:46:26,545 | INFO     | ..............................
[2025-11-27 10:46:59] 2025-11-27 15:46:26,545 | INFO     | . Timing measurements:
[2025-11-27 10:46:59] 2025-11-27 15:46:26,545 | INFO     | . get job = 0 s
[2025-11-27 10:46:59] 2025-11-27 15:46:26,545 | INFO     | . initial setup = 3 s
[2025-11-27 10:46:59] 2025-11-27 15:46:26,545 | INFO     | . payload setup = 19 s
[2025-11-27 10:46:59] 2025-11-27 15:46:26,545 | INFO     | . stage-in = 0 s
[2025-11-27 10:46:59] 2025-11-27 15:46:26,546 | INFO     | . payload execution = 124867 s
[2025-11-27 10:46:59] 2025-11-27 15:46:26,546 | INFO     | . stage-out = 3 s
[2025-11-27 10:46:59] 2025-11-27 15:46:26,546 | INFO     | . log creation = 1 s
[2025-11-27 10:46:59] 2025-11-27 15:46:26,546 | INFO     | ..............................
[2025-11-27 10:46:59] 2025-11-27 15:46:26,625 | INFO     | 
[2025-11-27 10:46:59] 2025-11-27 15:46:26,625 | INFO     | job summary report
[2025-11-27 10:46:59] 2025-11-27 15:46:26,626 | INFO     | --------------------------------------------------
[2025-11-27 10:46:59] 2025-11-27 15:46:26,626 | INFO     | PanDA job id: 6897661779
[2025-11-27 10:46:59] 2025-11-27 15:46:26,626 | INFO     | task id: 47556161
[2025-11-27 10:46:59] 2025-11-27 15:46:26,626 | INFO     | errors: (none)
[2025-11-27 10:46:59] 2025-11-27 15:46:26,626 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 10:46:59] 2025-11-27 15:46:26,626 | INFO     | pilot state: finished 
[2025-11-27 10:46:59] 2025-11-27 15:46:26,626 | INFO     | transexitcode: 0
[2025-11-27 10:46:59] 2025-11-27 15:46:26,626 | INFO     | exeerrorcode: 0
[2025-11-27 10:46:59] 2025-11-27 15:46:26,626 | INFO     | exeerrordiag: 
[2025-11-27 10:46:59] 2025-11-27 15:46:26,626 | INFO     | exitcode: 0
[2025-11-27 10:46:59] 2025-11-27 15:46:26,626 | INFO     | exitmsg: OK
[2025-11-27 10:46:59] 2025-11-27 15:46:26,626 | INFO     | cpuconsumptiontime: 220310 s
[2025-11-27 10:46:59] 2025-11-27 15:46:26,626 | INFO     | nevents: 1000
[2025-11-27 10:46:59] 2025-11-27 15:46:26,627 | INFO     | neventsw: 0
[2025-11-27 10:46:59] 2025-11-27 15:46:26,627 | INFO     | pid: 3299153
[2025-11-27 10:46:59] 2025-11-27 15:46:26,627 | INFO     | pgrp: 3299153
[2025-11-27 10:46:59] 2025-11-27 15:46:26,627 | INFO     | corecount: 9
[2025-11-27 10:46:59] 2025-11-27 15:46:26,627 | INFO     | event service: False
[2025-11-27 10:46:59] 2025-11-27 15:46:26,627 | INFO     | sizes: {0: 2284265, 10: 2284527, 11: 2284555, 124890: 2367556, 124891: 2367555, 124896: 2376605, 124898: 2376789, 124908: 2377035}
[2025-11-27 10:46:59] 2025-11-27 15:46:26,627 | INFO     | --------------------------------------------------
[2025-11-27 10:46:59] 2025-11-27 15:46:26,627 | INFO     | 
[2025-11-27 10:46:59] 2025-11-27 15:46:26,627 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-11-27 10:46:59] 2025-11-27 15:46:26,680 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 10:46:59] 2025-11-27 15:46:26,680 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 10:46:59] 2025-11-27 15:46:26,680 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 10:46:59] 2025-11-27 15:46:26,681 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 10:46:59] 2025-11-27 15:46:26,681 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 10:46:59] 2025-11-27 15:46:26,681 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 10:46:59] 2025-11-27 15:46:26,681 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 10:46:59] 2025-11-27 15:46:26,681 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 10:46:59] 2025-11-27 15:46:26,681 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 10:46:59] 2025-11-27 15:46:26,681 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 10:46:59] 2025-11-27 15:46:26,681 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 10:46:59] 2025-11-27 15:46:26,681 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 10:46:59] 2025-11-27 15:46:26,681 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 10:46:59] 2025-11-27 15:46:26,681 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 10:46:59] 2025-11-27 15:46:26,681 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 10:46:59] 2025-11-27 15:46:26,682 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 10:46:59] 2025-11-27 15:46:26,682 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 10:46:59] 2025-11-27 15:46:26,682 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 10:46:59] 2025-11-27 15:46:26,682 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 10:46:59] 2025-11-27 15:46:26,682 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 10:46:59] 2025-11-27 15:46:26,682 | INFO     | job 6897661779 has completed (purged errors)
[2025-11-27 10:46:59] 2025-11-27 15:46:26,682 | INFO     | overall cleanup function is called
[2025-11-27 10:46:59] 2025-11-27 15:46:27,702 | INFO     | --- collectZombieJob: --- 10, [3299153]
[2025-11-27 10:46:59] 2025-11-27 15:46:27,703 | INFO     | zombie collector waiting for pid 3299153
[2025-11-27 10:46:59] 2025-11-27 15:46:27,703 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 10:46:59] 2025-11-27 15:46:27,703 | INFO     | collected zombie processes
[2025-11-27 10:46:59] 2025-11-27 15:46:27,703 | INFO     | will attempt to kill all subprocesses of pid=3299153
[2025-11-27 10:46:59] 2025-11-27 15:46:28,129 | INFO     | process IDs to be killed: [3299153] (in reverse order)
[2025-11-27 10:46:59] 2025-11-27 15:46:28,267 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 10:46:59] 2025-11-27 15:46:28,268 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 10:46:59] 2025-11-27 15:46:28,287 | INFO     | did not find any defunct processes belonging to 3299153
[2025-11-27 10:46:59] 2025-11-27 15:46:28,305 | INFO     | did not find any defunct processes belonging to 3299153
[2025-11-27 10:46:59] 2025-11-27 15:46:28,306 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 10:46:59] 2025-11-27 15:46:28,306 | INFO     | ready for new job
[2025-11-27 10:46:59] 2025-11-27 15:46:28,306 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 10:46:59] 2025-11-27 15:46:28,315 | INFO     | ***************************************
[2025-11-27 10:46:59] 2025-11-27 15:46:28,315 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 10:46:59] 2025-11-27 15:46:28,315 | INFO     | ***************************************
[2025-11-27 10:46:59] 2025-11-27 15:46:28,315 | INFO     | 
[2025-11-27 10:46:59] 2025-11-27 15:46:28,320 | INFO     | architecture information:
[2025-11-27 10:46:59] 2025-11-27 15:46:28,321 | INFO     | executing command: cat /etc/os-release
[2025-11-27 10:46:59] 2025-11-27 15:46:28,353 | INFO     | cat /etc/os-release:
[2025-11-27 10:46:59] NAME="CentOS Linux"
[2025-11-27 10:46:59] VERSION="7 (Core)"
[2025-11-27 10:46:59] ID="centos"
[2025-11-27 10:46:59] ID_LIKE="rhel fedora"
[2025-11-27 10:46:59] VERSION_ID="7"
[2025-11-27 10:46:59] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 10:46:59] ANSI_COLOR="0;31"
[2025-11-27 10:46:59] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 10:46:59] HOME_URL="https://www.centos.org/"
[2025-11-27 10:46:59] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 10:46:59] 
[2025-11-27 10:46:59] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 10:46:59] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 10:46:59] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 10:46:59] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 10:46:59] 
[2025-11-27 10:46:59] 2025-11-27 15:46:28,353 | INFO     | ***************************************
[2025-11-27 10:46:59] 2025-11-27 15:46:28,857 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-11-27 10:46:59] 2025-11-27 15:46:28,878 | INFO     | sufficient remaining disk space (119086776320 B)
[2025-11-27 10:46:59] 2025-11-27 15:46:28,879 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 10:46:59] 2025-11-27 15:46:28,879 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 10:46:59] 2025-11-27 15:46:28,879 | INFO     | update_server=False
[2025-11-27 10:46:59] 2025-11-27 15:46:28,879 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 10:46:59] 2025-11-27 15:46:29,240 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-27 10:46:59] 2025-11-27 15:46:29,241 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-27 10:46:59] 2025-11-27 15:46:29,241 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 10:46:59] 2025-11-27 15:46:29,241 | INFO     | will abort loop
[2025-11-27 10:46:59] 2025-11-27 15:46:29,256 | INFO     | all payload control threads have been joined
[2025-11-27 10:46:59] 2025-11-27 15:46:29,846 | INFO     | all data control threads have been joined
[2025-11-27 10:46:59] 2025-11-27 15:46:29,885 | INFO     | [job] retrieve thread has finished
[2025-11-27 10:46:59] 2025-11-27 15:46:29,914 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 10:46:59] 2025-11-27 15:46:29,929 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 10:46:59] 2025-11-27 15:46:30,034 | INFO     | [payload] validate_post thread has finished
[2025-11-27 10:46:59] 2025-11-27 15:46:30,133 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 10:46:59] 2025-11-27 15:46:30,144 | INFO     | [data] copytool_in thread has finished
[2025-11-27 10:46:59] 2025-11-27 15:46:30,161 | INFO     | all job control threads have been joined
[2025-11-27 10:46:59] 2025-11-27 15:46:30,246 | INFO     | [job] job monitor thread has finished
[2025-11-27 10:46:59] 2025-11-27 15:46:30,263 | INFO     | [payload] control thread has finished
[2025-11-27 10:46:59] 2025-11-27 15:46:30,270 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 10:46:59] 2025-11-27 15:46:30,852 | INFO     | [data] control thread has finished
[2025-11-27 10:46:59] 2025-11-27 15:46:31,135 | INFO     | [payload] failed_post thread has finished
[2025-11-27 10:46:59] 2025-11-27 15:46:31,166 | INFO     | [job] control thread has finished
[2025-11-27 10:46:59] 2025-11-27 15:46:31,252 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 10:46:59] 2025-11-27 15:46:31,351 | INFO     | [job] validate thread has finished
[2025-11-27 10:46:59] 2025-11-27 15:46:31,631 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 10:46:59] 2025-11-27 15:46:31,825 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 10:46:59] 2025-11-27 15:46:32,276 | INFO     | [data] copytool_out thread has finished
[2025-11-27 10:46:59] 2025-11-27 15:46:32,639 | INFO     | [job] queue monitor thread has finished
[2025-11-27 10:46:59] 2025-11-27 15:46:35,834 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 10:46:59] 2025-11-27 15:46:51,592 | INFO     | [monitor] cgroup control has ended
[2025-11-27 10:46:59] 2025-11-27 15:46:52,672 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140424567150400)>', '<ExcThread(monitor, started 140424056387328)>']
[2025-11-27 10:46:59] 2025-11-27 15:46:57,698 | INFO     | all workflow threads have been joined
[2025-11-27 10:46:59] 2025-11-27 15:46:57,699 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 10:46:59] 2025-11-27 15:46:57,699 | INFO     | traces error code: 0
[2025-11-27 10:46:59] 2025-11-27 15:46:57,699 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 10:46:59] 2025-11-27 15:46:59,463 | INFO     | PID=3277310 has CPU usage=4.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 10:46:59] 2025-11-27 15:46:59,465 | INFO     | .. there are 24 such processes running
[2025-11-27 10:46:59] 2025-11-27 15:46:59,466 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 10:46:59] 2025-11-27 15:46:59,467 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 10:46:59] 2025-11-27 15:46:59,467 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 10:46:59] 2025-11-27 15:46:59,467 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 10:46:59] 2025-11-27 15:46:59,467 | INFO     | [monitor] control thread has ended
[2025-11-27 10:46:59] 2025-11-27 15:46:59,602 [wrapper] ==== pilot stdout END ====
[2025-11-27 10:46:59] 2025-11-27 15:46:59,606 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 10:46:59] 2025-11-27 15:46:59,609 [wrapper] pilotpid: 3277310
[2025-11-27 10:46:59] 2025-11-27 15:46:59,613 [wrapper] Pilot exit status: 0
[2025-11-27 10:46:59] 2025-11-27 15:46:59,629 [wrapper] pandaids: 6897661779
[2025-11-27 10:46:59] 2025-11-27 15:46:59,725 [wrapper] cleanup supervisor_pilot 1770000 3277311
[2025-11-27 10:46:59] 2025-11-27 15:46:59,729 [wrapper] Test setup, not cleaning
[2025-11-27 10:46:59] 2025-11-27 15:46:59,733 [wrapper] apfmon messages muted
[2025-11-27 10:46:59] 2025-11-27 15:46:59,737 [wrapper] ==== wrapper stdout END ====
[2025-11-27 10:46:59] 2025-11-27 15:46:59,745 [wrapper] ==== wrapper stderr END ====
[2025-11-27 10:46:59]  *** Error codes and diagnostics ***
[2025-11-27 10:46:59]     "exeErrorCode": 0,
[2025-11-27 10:46:59]     "exeErrorDiag": "",
[2025-11-27 10:46:59]     "pilotErrorCode": 0,
[2025-11-27 10:46:59]     "pilotErrorDiag": "",
[2025-11-27 10:46:59]  *** Listing of results directory ***
[2025-11-27 10:46:59] total 1346572
[2025-11-27 10:46:59] -rw-r--r--. 1 boincer umatlas    576529 Nov 25 11:48 pilot3.tar.gz
[2025-11-27 10:46:59] -rwx------. 1 boincer umatlas     36292 Nov 25 12:01 runpilot2-wrapper.sh
[2025-11-27 10:46:59] -rw-r--r--. 1 boincer umatlas      5112 Nov 25 12:02 queuedata.json
[2025-11-27 10:46:59] -rw-r--r--. 1 boincer umatlas       100 Nov 26 00:03 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 10:46:59] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 26 00:03 run_atlas
[2025-11-27 10:46:59] -rw-r--r--. 1 boincer umatlas       105 Nov 26 00:03 job.xml
[2025-11-27 10:46:59] -rw-r--r--. 2 boincer umatlas 410896287 Nov 26 00:03 EVNT.47483658._002315.pool.root.1
[2025-11-27 10:46:59] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 00:03 start_atlas.sh
[2025-11-27 10:46:59] drwxrwx--x. 2 boincer umatlas      4096 Nov 26 00:03 shared
[2025-11-27 10:46:59] -rw-r--r--. 2 boincer umatlas    590103 Nov 26 00:03 input.tar.gz
[2025-11-27 10:46:59] -rw-r--r--. 1 boincer umatlas         0 Nov 26 00:03 boinc_lockfile
[2025-11-27 10:46:59] -rw-r--r--. 1 boincer umatlas      2786 Nov 26 00:03 pandaJob.out
[2025-11-27 10:46:59] -rw-------. 1 boincer umatlas        57 Nov 26 00:03 setup.sh.local
[2025-11-27 10:46:59] -rw-------. 1 boincer umatlas    991877 Nov 26 00:04 agis_schedconf.cvmfs.json
[2025-11-27 10:46:59] drwx------. 5 boincer umatlas      4096 Nov 26 00:04 pilot3
[2025-11-27 10:46:59] -rw-r--r--. 1 boincer umatlas      6951 Nov 27 10:36 init_data.xml
[2025-11-27 10:46:59] -rw-r--r--. 1 boincer umatlas       534 Nov 27 10:37 boinc_task_state.xml
[2025-11-27 10:46:59] -rw-------. 1 boincer umatlas 925298045 Nov 27 10:45 HITS.47556161._002987.pool.root.1
[2025-11-27 10:46:59] -rw-------. 1 boincer umatlas      1065 Nov 27 10:46 memory_monitor_summary.json
[2025-11-27 10:46:59] -rw-------. 1 boincer umatlas   1516240 Nov 27 10:46 agis_ddmendpoints.agis.ALL.json
[2025-11-27 10:46:59] -rw-------. 1 boincer umatlas   3062151 Nov 27 10:46 log.47556161._002987.job.log.tgz.1
[2025-11-27 10:46:59] -rw-------. 1 boincer umatlas      8625 Nov 27 10:46 heartbeat.json
[2025-11-27 10:46:59] -rw-r--r--. 1 boincer umatlas      8192 Nov 27 10:46 boinc_mmap_file
[2025-11-27 10:46:59] -rw-r--r--. 1 boincer umatlas        30 Nov 27 10:46 wrapper_checkpoint.txt
[2025-11-27 10:46:59] -rw-------. 1 boincer umatlas        95 Nov 27 10:46 pilot_heartbeat.json
[2025-11-27 10:46:59] -rw-------. 1 boincer umatlas       823 Nov 27 10:46 pilotlog.txt
[2025-11-27 10:46:59] -rw-------. 1 boincer umatlas  16327688 Nov 27 10:46 log.47556161._002987.job.log.1
[2025-11-27 10:46:59] -rw-------. 1 boincer umatlas       353 Nov 27 10:46 output.list
[2025-11-27 10:46:59] -rw-r--r--. 1 boincer umatlas       620 Nov 27 10:46 runtime_log
[2025-11-27 10:46:59] -rw-------. 1 boincer umatlas  19404800 Nov 27 10:46 result.tar.gz
[2025-11-27 10:46:59] -rw-r--r--. 1 boincer umatlas      9344 Nov 27 10:46 runtime_log.err
[2025-11-27 10:46:59] -rw-------. 1 boincer umatlas       668 Nov 27 10:46 g2tKDmXbBi8n9Rq4apOajLDm4fhM0noT9bVo0NGKDm3hJKDm01zAan.diag
[2025-11-27 10:46:59] -rw-r--r--. 1 boincer umatlas     21632 Nov 27 10:46 stderr.txt
[2025-11-27 10:46:59] HITS file was successfully produced:
[2025-11-27 10:46:59] -rw-------. 1 boincer umatlas 925298045 Nov 27 10:45 shared/HITS.pool.root.1
[2025-11-27 10:46:59]  *** Contents of shared directory: ***
[2025-11-27 10:46:59] total 1324436
[2025-11-27 10:46:59] -rw-r--r--. 2 boincer umatlas 410896287 Nov 26 00:03 ATLAS.root_0
[2025-11-27 10:46:59] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 00:03 start_atlas.sh
[2025-11-27 10:46:59] -rw-r--r--. 2 boincer umatlas    590103 Nov 26 00:03 input.tar.gz
[2025-11-27 10:46:59] -rw-------. 1 boincer umatlas 925298045 Nov 27 10:45 HITS.pool.root.1
[2025-11-27 10:46:59] -rw-------. 1 boincer umatlas  19404800 Nov 27 10:46 result.tar.gz
10:47:01 (3273385): run_atlas exited; CPU time 222122.755670
10:47:01 (3273385): called boinc_finish(0)

</stderr_txt>
]]>

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