Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
23:20:19 (26185): wrapper (7.7.26015): starting
23:20:19 (26185): wrapper: running run_atlas (--nthreads 8)
[2025-11-25 23:20:19] Arguments: --nthreads 8
[2025-11-25 23:20:19] Threads: 8
[2025-11-25 23:20:19] Checking for CVMFS
[2025-11-25 23:20:19] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 23:20:19] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 23:20:19] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 23:20:20] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 23:20:20] 2.13.3.0 7030 4881 232728 153309 3 129 22525585 32935936 56642 16776704 0 39549815 99.722 30330200 32550 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-25 23:20:20] CVMFS is ok
[2025-11-25 23:20:20] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 23:20:20] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 23:20:20] Further information can be found at the LHC@home message board.
[2025-11-25 23:20:20] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 23:20:20] Checking for apptainer binary...
[2025-11-25 23:20:20] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 23:20:20] Running /usr/bin/apptainer --version
[2025-11-25 23:20:20] apptainer version 1.4.4-1.el9
[2025-11-25 23:20:20] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 23:20:21] lc-10-10.aglt2.org
[2025-11-25 23:20:21] apptainer works
[2025-11-25 23:20:21] Set ATHENA_PROC_NUMBER=8
[2025-11-25 23:20:21] Set ATHENA_CORE_NUMBER=8
[2025-11-25 23:20:21] Starting ATLAS job with PandaID=6897661780
[2025-11-25 23:20:21] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/6 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 21:33:03]  *** The last 200 lines of the pilot log: ***
[2025-11-26 21:33:03] 2025-11-27 02:32:24,374 | INFO     | sum of square deviations: 692291534638.1407
[2025-11-26 21:33:03] 2025-11-27 02:32:24,407 | INFO     | sum of deviations: 2933761236739.4565
[2025-11-26 21:33:03] 2025-11-27 02:32:24,408 | INFO     | mean x: 1764170843.1201224
[2025-11-26 21:33:03] 2025-11-27 02:32:24,408 | INFO     | mean y: 2877788.3473603674
[2025-11-26 21:33:03] 2025-11-27 02:32:24,408 | INFO     | intersect: -7473244301.224462
[2025-11-26 21:33:03] 2025-11-27 02:32:24,409 | INFO     | chi2: 10.749115283012802
[2025-11-26 21:33:03] 2025-11-27 02:32:24,411 | INFO     | sum of square deviations: 684377245318.0795
[2025-11-26 21:33:03] 2025-11-27 02:32:24,444 | INFO     | sum of deviations: 3369994023624.1284
[2025-11-26 21:33:03] 2025-11-27 02:32:24,444 | INFO     | mean x: 1764170690.6282642
[2025-11-26 21:33:03] 2025-11-27 02:32:24,444 | INFO     | mean y: 2886192.6758832564
[2025-11-26 21:33:03] 2025-11-27 02:32:24,444 | INFO     | intersect: -8684200826.570232
[2025-11-26 21:33:03] 2025-11-27 02:32:24,446 | INFO     | chi2: 7.659329051764894
[2025-11-26 21:33:03] 2025-11-27 02:32:24,446 | INFO     | current chi2=7.659329051764894 (change=28.744563156102753 %)
[2025-11-26 21:33:03] 2025-11-27 02:32:24,448 | INFO     | sum of square deviations: 676523515272.8462
[2025-11-26 21:33:03] 2025-11-27 02:32:24,588 | INFO     | sum of deviations: 3713516333215.4053
[2025-11-26 21:33:03] 2025-11-27 02:32:24,589 | INFO     | mean x: 1764170538.136469
[2025-11-26 21:33:03] 2025-11-27 02:32:24,589 | INFO     | mean y: 2892856.3592906706
[2025-11-26 21:33:03] 2025-11-27 02:32:24,589 | INFO     | intersect: -9680844604.422125
[2025-11-26 21:33:03] 2025-11-27 02:32:24,646 | INFO     | chi2: 5.308220326410907
[2025-11-26 21:33:03] 2025-11-27 02:32:24,646 | INFO     | current chi2=5.308220326410907 (change=30.696014095545817 %)
[2025-11-26 21:33:03] 2025-11-27 02:32:24,647 | INFO     | sum of square deviations: 668729637011.6436
[2025-11-26 21:33:03] 2025-11-27 02:32:24,772 | INFO     | sum of deviations: 3696071435576.055
[2025-11-26 21:33:03] 2025-11-27 02:32:24,772 | INFO     | mean x: 1764170385.6400928
[2025-11-26 21:33:03] 2025-11-27 02:32:24,772 | INFO     | mean y: 2892514.1377708977
[2025-11-26 21:33:03] 2025-11-27 02:32:24,772 | INFO     | intersect: -9747684414.06858
[2025-11-26 21:33:03] 2025-11-27 02:32:24,774 | INFO     | chi2: 5.290658454401548
[2025-11-26 21:33:03] 2025-11-27 02:32:24,774 | INFO     | current chi2=5.290658454401548 (change=0.3308429366049491 %)
[2025-11-26 21:33:03] 2025-11-27 02:32:24,774 | INFO     | right removable region: 1291
[2025-11-26 21:33:03] 2025-11-27 02:32:24,776 | INFO     | sum of square deviations: 684375555008.0804
[2025-11-26 21:33:03] 2025-11-27 02:32:24,809 | INFO     | sum of deviations: 2432631432962.235
[2025-11-26 21:33:03] 2025-11-27 02:32:24,810 | INFO     | mean x: 1764170995.6282642
[2025-11-26 21:33:03] 2025-11-27 02:32:24,810 | INFO     | mean y: 2887441.3579109064
[2025-11-26 21:33:03] 2025-11-27 02:32:24,810 | INFO     | intersect: -6267906110.049585
[2025-11-26 21:33:03] 2025-11-27 02:32:24,811 | INFO     | chi2: 6.945321742650301
[2025-11-26 21:33:03] 2025-11-27 02:32:24,812 | INFO     | current chi2=6.945321742650301 (change=35.38703828373455 %)
[2025-11-26 21:33:03] 2025-11-27 02:32:24,813 | INFO     | sum of square deviations: 676520213834.1174
[2025-11-26 21:33:03] 2025-11-27 02:32:24,856 | INFO     | sum of deviations: 2149170424121.2744
[2025-11-26 21:33:03] 2025-11-27 02:32:24,856 | INFO     | mean x: 1764171148.1356978
[2025-11-26 21:33:03] 2025-11-27 02:32:24,857 | INFO     | mean y: 2892940.475713184
[2025-11-26 21:33:03] 2025-11-27 02:32:24,857 | INFO     | intersect: -5601528593.61756
[2025-11-26 21:33:03] 2025-11-27 02:32:24,861 | INFO     | chi2: 5.699673590078838
[2025-11-26 21:33:03] 2025-11-27 02:32:24,861 | INFO     | current chi2=5.699673590078838 (change=17.935067643045286 %)
[2025-11-26 21:33:03] 2025-11-27 02:32:24,861 | INFO     | left removable region: 20
[2025-11-26 21:33:03] 2025-11-27 02:32:24,863 | INFO     | sum of square deviations: 636645437427.2573
[2025-11-26 21:33:03] 2025-11-27 02:32:24,915 | INFO     | sum of deviations: 2751622361679.071
[2025-11-26 21:33:03] 2025-11-27 02:32:24,915 | INFO     | mean x: 1764170965.1605036
[2025-11-26 21:33:03] 2025-11-27 02:32:24,915 | INFO     | mean y: 2911007.2643587724
[2025-11-26 21:33:03] 2025-11-27 02:32:24,915 | INFO     | intersect: -7621948910.333406
[2025-11-26 21:33:03] 2025-11-27 02:32:24,917 | INFO     | chi2: 0.09468829853992904
[2025-11-26 21:33:03] 2025-11-27 02:32:24,917 | INFO     | current memory leak: 4.32 B/s (using 1271 data points, chi2=0.09)
[2025-11-26 21:33:03] 2025-11-27 02:32:24,918 | INFO     | could have reported an average CPU frequency of 2732 MHz (47 samples)
[2025-11-26 21:33:03] 2025-11-27 02:32:24,919 | INFO     | ..............................
[2025-11-26 21:33:03] 2025-11-27 02:32:24,919 | INFO     | . Timing measurements:
[2025-11-26 21:33:03] 2025-11-27 02:32:24,919 | INFO     | . get job = 0 s
[2025-11-26 21:33:03] 2025-11-27 02:32:24,919 | INFO     | . initial setup = 4 s
[2025-11-26 21:33:03] 2025-11-27 02:32:24,919 | INFO     | . payload setup = 37 s
[2025-11-26 21:33:03] 2025-11-27 02:32:24,919 | INFO     | . stage-in = 0 s
[2025-11-26 21:33:03] 2025-11-27 02:32:24,919 | INFO     | . payload execution = 79721 s
[2025-11-26 21:33:03] 2025-11-27 02:32:24,919 | INFO     | . stage-out = 6 s
[2025-11-26 21:33:03] 2025-11-27 02:32:24,919 | INFO     | . log creation = 1 s
[2025-11-26 21:33:03] 2025-11-27 02:32:24,919 | INFO     | ..............................
[2025-11-26 21:33:03] 2025-11-27 02:32:24,955 | INFO     | time since job start (79860s) is within the limit (172800.0s)
[2025-11-26 21:33:03] 2025-11-27 02:32:25,280 | INFO     | 
[2025-11-26 21:33:03] 2025-11-27 02:32:25,280 | INFO     | job summary report
[2025-11-26 21:33:03] 2025-11-27 02:32:25,281 | INFO     | --------------------------------------------------
[2025-11-26 21:33:03] 2025-11-27 02:32:25,281 | INFO     | PanDA job id: 6897661780
[2025-11-26 21:33:03] 2025-11-27 02:32:25,281 | INFO     | task id: 47556161
[2025-11-26 21:33:03] 2025-11-27 02:32:25,281 | INFO     | errors: (none)
[2025-11-26 21:33:03] 2025-11-27 02:32:25,281 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 21:33:03] 2025-11-27 02:32:25,281 | INFO     | pilot state: finished 
[2025-11-26 21:33:03] 2025-11-27 02:32:25,281 | INFO     | transexitcode: 0
[2025-11-26 21:33:03] 2025-11-27 02:32:25,281 | INFO     | exeerrorcode: 0
[2025-11-26 21:33:03] 2025-11-27 02:32:25,295 | INFO     | exeerrordiag: 
[2025-11-26 21:33:03] 2025-11-27 02:32:25,296 | INFO     | exitcode: 0
[2025-11-26 21:33:03] 2025-11-27 02:32:25,296 | INFO     | exitmsg: OK
[2025-11-26 21:33:03] 2025-11-27 02:32:25,296 | INFO     | cpuconsumptiontime: 265405 s
[2025-11-26 21:33:03] 2025-11-27 02:32:25,296 | INFO     | nevents: 1000
[2025-11-26 21:33:03] 2025-11-27 02:32:25,296 | INFO     | neventsw: 0
[2025-11-26 21:33:03] 2025-11-27 02:32:25,296 | INFO     | pid: 87811
[2025-11-26 21:33:03] 2025-11-27 02:32:25,296 | INFO     | pgrp: 87811
[2025-11-26 21:33:03] 2025-11-27 02:32:25,296 | INFO     | corecount: 8
[2025-11-26 21:33:03] 2025-11-27 02:32:25,296 | INFO     | event service: False
[2025-11-26 21:33:03] 2025-11-27 02:32:25,296 | INFO     | sizes: {0: 2284094, 1: 2284293, 12: 2284293, 23: 2284321, 28: 2284611, 34: 2284639, 79763: 2345007, 79771: 2354029, 79773: 2354085, 79800: 2354331}
[2025-11-26 21:33:03] 2025-11-27 02:32:25,296 | INFO     | --------------------------------------------------
[2025-11-26 21:33:03] 2025-11-27 02:32:25,296 | INFO     | 
[2025-11-26 21:33:03] 2025-11-27 02:32:25,297 | INFO     | executing command: ls -lF /tmp/boinchome/slots/6
[2025-11-26 21:33:03] 2025-11-27 02:32:25,448 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 21:33:03] 2025-11-27 02:32:25,448 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 21:33:03] 2025-11-27 02:32:25,448 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 21:33:03] 2025-11-27 02:32:25,448 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 21:33:03] 2025-11-27 02:32:25,448 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 21:33:03] 2025-11-27 02:32:25,448 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 21:33:03] 2025-11-27 02:32:25,448 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 21:33:03] 2025-11-27 02:32:25,448 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 21:33:03] 2025-11-27 02:32:25,449 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 21:33:03] 2025-11-27 02:32:25,449 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 21:33:03] 2025-11-27 02:32:25,449 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 21:33:03] 2025-11-27 02:32:25,449 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 21:33:03] 2025-11-27 02:32:25,449 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 21:33:03] 2025-11-27 02:32:25,449 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 21:33:03] 2025-11-27 02:32:25,449 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 21:33:03] 2025-11-27 02:32:25,449 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 21:33:03] 2025-11-27 02:32:25,449 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 21:33:03] 2025-11-27 02:32:25,449 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 21:33:03] 2025-11-27 02:32:25,449 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 21:33:03] 2025-11-27 02:32:25,449 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 21:33:03] 2025-11-27 02:32:25,450 | INFO     | job 6897661780 has completed (purged errors)
[2025-11-26 21:33:03] 2025-11-27 02:32:25,450 | INFO     | overall cleanup function is called
[2025-11-26 21:33:03] 2025-11-27 02:32:26,474 | INFO     | --- collectZombieJob: --- 10, [87811]
[2025-11-26 21:33:03] 2025-11-27 02:32:26,474 | INFO     | zombie collector waiting for pid 87811
[2025-11-26 21:33:03] 2025-11-27 02:32:26,474 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 21:33:03] 2025-11-27 02:32:26,474 | INFO     | collected zombie processes
[2025-11-26 21:33:03] 2025-11-27 02:32:26,474 | INFO     | will attempt to kill all subprocesses of pid=87811
[2025-11-26 21:33:03] 2025-11-27 02:32:29,110 | INFO     | PID=42528 has CPU usage=5.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-26 21:33:03] 2025-11-27 02:32:29,110 | INFO     | .. there are 96 such processes running
[2025-11-26 21:33:03] 2025-11-27 02:32:29,382 | INFO     | process IDs to be killed: [87811] (in reverse order)
[2025-11-26 21:33:03] 2025-11-27 02:32:29,781 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 21:33:03] 2025-11-27 02:32:29,781 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 21:33:03] 2025-11-27 02:32:29,896 | INFO     | did not find any defunct processes belonging to 87811
[2025-11-26 21:33:03] 2025-11-27 02:32:29,999 | INFO     | did not find any defunct processes belonging to 87811
[2025-11-26 21:33:03] 2025-11-27 02:32:30,004 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 21:33:03] 2025-11-27 02:32:30,005 | INFO     | ready for new job
[2025-11-26 21:33:03] 2025-11-27 02:32:30,005 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 21:33:03] 2025-11-27 02:32:30,019 | INFO     | ***************************************
[2025-11-26 21:33:03] 2025-11-27 02:32:30,019 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 21:33:03] 2025-11-27 02:32:30,019 | INFO     | ***************************************
[2025-11-26 21:33:03] 2025-11-27 02:32:30,019 | INFO     | 
[2025-11-26 21:33:03] 2025-11-27 02:32:30,035 | INFO     | architecture information:
[2025-11-26 21:33:03] 2025-11-27 02:32:30,040 | INFO     | executing command: cat /etc/os-release
[2025-11-26 21:33:03] 2025-11-27 02:32:30,111 | INFO     | cat /etc/os-release:
[2025-11-26 21:33:03] NAME="CentOS Linux"
[2025-11-26 21:33:03] VERSION="7 (Core)"
[2025-11-26 21:33:03] ID="centos"
[2025-11-26 21:33:03] ID_LIKE="rhel fedora"
[2025-11-26 21:33:03] VERSION_ID="7"
[2025-11-26 21:33:03] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 21:33:03] ANSI_COLOR="0;31"
[2025-11-26 21:33:03] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 21:33:03] HOME_URL="https://www.centos.org/"
[2025-11-26 21:33:03] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 21:33:03] 
[2025-11-26 21:33:03] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 21:33:03] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 21:33:03] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 21:33:03] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 21:33:03] 
[2025-11-26 21:33:03] 2025-11-27 02:32:30,112 | INFO     | ***************************************
[2025-11-26 21:33:03] 2025-11-27 02:32:30,615 | INFO     | executing command: df -mP /tmp/boinchome/slots/6
[2025-11-26 21:33:03] 2025-11-27 02:32:30,666 | INFO     | sufficient remaining disk space (89309315072 B)
[2025-11-26 21:33:03] 2025-11-27 02:32:30,666 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 21:33:03] 2025-11-27 02:32:30,666 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 21:33:03] 2025-11-27 02:32:30,666 | INFO     | update_server=False
[2025-11-26 21:33:03] 2025-11-27 02:32:30,666 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 21:33:03] 2025-11-27 02:32:30,667 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 21:33:03] 2025-11-27 02:32:31,087 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 21:33:03] 2025-11-27 02:32:31,248 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 21:33:03] 2025-11-27 02:32:31,249 | INFO     | aborting loop
[2025-11-26 21:33:03] 2025-11-27 02:32:31,475 | INFO     | all data control threads have been joined
[2025-11-26 21:33:03] 2025-11-27 02:32:31,504 | INFO     | all payload control threads have been joined
[2025-11-26 21:33:03] 2025-11-27 02:32:31,653 | INFO     | all job control threads have been joined
[2025-11-26 21:33:03] 2025-11-27 02:32:31,678 | INFO     | [job] retrieve thread has finished
[2025-11-26 21:33:03] 2025-11-27 02:32:31,679 | INFO     | [job] queue monitor thread has finished
[2025-11-26 21:33:03] 2025-11-27 02:32:31,853 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 21:33:03] 2025-11-27 02:32:31,927 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 21:33:03] 2025-11-27 02:32:32,123 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 21:33:03] 2025-11-27 02:32:32,185 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 21:33:03] 2025-11-27 02:32:32,262 | INFO     | [job] job monitor thread has finished
[2025-11-26 21:33:03] 2025-11-27 02:32:32,453 | INFO     | [payload] failed_post thread has finished
[2025-11-26 21:33:03] 2025-11-27 02:32:32,481 | INFO     | [data] control thread has finished
[2025-11-26 21:33:03] 2025-11-27 02:32:32,493 | INFO     | [data] copytool_in thread has finished
[2025-11-26 21:33:03] 2025-11-27 02:32:32,512 | INFO     | [payload] control thread has finished
[2025-11-26 21:33:03] 2025-11-27 02:32:32,659 | INFO     | [job] control thread has finished
[2025-11-26 21:33:03] 2025-11-27 02:32:32,680 | INFO     | [job] validate thread has finished
[2025-11-26 21:33:03] 2025-11-27 02:32:32,863 | INFO     | [payload] validate_post thread has finished
[2025-11-26 21:33:03] 2025-11-27 02:32:32,972 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 21:33:03] 2025-11-27 02:32:34,134 | INFO     | [data] copytool_out thread has finished
[2025-11-26 21:33:03] 2025-11-27 02:32:35,112 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 21:33:03] 2025-11-27 02:32:50,826 | INFO     | [monitor] cgroup control has ended
[2025-11-26 21:33:03] 2025-11-27 02:32:52,666 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139755135203136)>', '<ExcThread(monitor, started 139754234423040)>']
[2025-11-26 21:33:03] 2025-11-27 02:32:57,692 | INFO     | all workflow threads have been joined
[2025-11-26 21:33:03] 2025-11-27 02:32:57,692 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 21:33:03] 2025-11-27 02:32:57,693 | INFO     | traces error code: 0
[2025-11-26 21:33:03] 2025-11-27 02:32:57,693 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 21:33:03] 2025-11-27 02:33:02,785 | INFO     | PID=42528 has CPU usage=5.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-26 21:33:03] 2025-11-27 02:33:02,785 | INFO     | .. there are 95 such processes running
[2025-11-26 21:33:03] 2025-11-27 02:33:02,789 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 21:33:03] 2025-11-27 02:33:02,789 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 21:33:03] 2025-11-27 02:33:02,789 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 21:33:03] 2025-11-27 02:33:02,789 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 21:33:03] 2025-11-27 02:33:02,789 | INFO     | [monitor] control thread has ended
[2025-11-26 21:33:03] 2025-11-27 02:33:02,988 [wrapper] ==== pilot stdout END ====
[2025-11-26 21:33:03] 2025-11-27 02:33:02,991 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 21:33:03] 2025-11-27 02:33:02,993 [wrapper] pilotpid: 42528
[2025-11-26 21:33:03] 2025-11-27 02:33:02,995 [wrapper] Pilot exit status: 0
[2025-11-26 21:33:03] 2025-11-27 02:33:03,022 [wrapper] pandaids: 6897661780
[2025-11-26 21:33:03] 2025-11-27 02:33:03,297 [wrapper] cleanup supervisor_pilot 1329131 42529
[2025-11-26 21:33:03] 2025-11-27 02:33:03,321 [wrapper] Test setup, not cleaning
[2025-11-26 21:33:03] 2025-11-27 02:33:03,345 [wrapper] apfmon messages muted
[2025-11-26 21:33:03] 2025-11-27 02:33:03,347 [wrapper] ==== wrapper stdout END ====
[2025-11-26 21:33:03] 2025-11-27 02:33:03,350 [wrapper] ==== wrapper stderr END ====
[2025-11-26 21:33:03]  *** Error codes and diagnostics ***
[2025-11-26 21:33:03]     "exeErrorCode": 0,
[2025-11-26 21:33:03]     "exeErrorDiag": "",
[2025-11-26 21:33:03]     "pilotErrorCode": 0,
[2025-11-26 21:33:03]     "pilotErrorDiag": "",
[2025-11-26 21:33:03]  *** Listing of results directory ***
[2025-11-26 21:33:03] total 1340204
[2025-11-26 21:33:03] -rw-r--r--. 1 boincer umatlas    576529 Nov 25 11:48 pilot3.tar.gz
[2025-11-26 21:33:03] -rwx------. 1 boincer umatlas     36292 Nov 25 12:01 runpilot2-wrapper.sh
[2025-11-26 21:33:03] -rw-r--r--. 1 boincer umatlas      5112 Nov 25 12:02 queuedata.json
[2025-11-26 21:33:03] -rw-r--r--. 1 boincer umatlas       100 Nov 25 23:20 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 21:33:03] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 25 23:20 run_atlas
[2025-11-26 21:33:03] -rw-r--r--. 1 boincer umatlas       105 Nov 25 23:20 job.xml
[2025-11-26 21:33:03] -rw-r--r--. 2 boincer umatlas 410896287 Nov 25 23:20 EVNT.47483658._002315.pool.root.1
[2025-11-26 21:33:03] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 23:20 start_atlas.sh
[2025-11-26 21:33:03] drwxrwx--x. 2 boincer umatlas      4096 Nov 25 23:20 shared
[2025-11-26 21:33:03] -rw-r--r--. 2 boincer umatlas    590106 Nov 25 23:20 input.tar.gz
[2025-11-26 21:33:03] -rw-r--r--. 1 boincer umatlas         0 Nov 25 23:20 boinc_lockfile
[2025-11-26 21:33:03] -rw-r--r--. 1 boincer umatlas      2786 Nov 25 23:20 pandaJob.out
[2025-11-26 21:33:03] -rw-------. 1 boincer umatlas        57 Nov 25 23:20 setup.sh.local
[2025-11-26 21:33:03] -rw-------. 1 boincer umatlas    991877 Nov 25 23:21 agis_schedconf.cvmfs.json
[2025-11-26 21:33:03] drwx------. 5 boincer umatlas      4096 Nov 25 23:21 pilot3
[2025-11-26 21:33:03] -rw-r--r--. 1 boincer umatlas       533 Nov 26 21:20 boinc_task_state.xml
[2025-11-26 21:33:03] -rw-------. 1 boincer umatlas 934880452 Nov 26 21:30 HITS.47556161._002988.pool.root.1
[2025-11-26 21:33:03] -rw-r--r--. 1 boincer umatlas      6885 Nov 26 21:31 init_data.xml
[2025-11-26 21:33:03] -rw-------. 1 boincer umatlas      1060 Nov 26 21:31 memory_monitor_summary.json
[2025-11-26 21:33:03] -rw-------. 1 boincer umatlas   1516240 Nov 26 21:31 agis_ddmendpoints.agis.ALL.json
[2025-11-26 21:33:03] -rw-------. 1 boincer umatlas   2288114 Nov 26 21:31 log.47556161._002988.job.log.tgz.1
[2025-11-26 21:33:03] -rw-------. 1 boincer umatlas      8619 Nov 26 21:32 heartbeat.json
[2025-11-26 21:33:03] -rw-r--r--. 1 boincer umatlas      8192 Nov 26 21:32 boinc_mmap_file
[2025-11-26 21:33:03] -rw-r--r--. 1 boincer umatlas        29 Nov 26 21:32 wrapper_checkpoint.txt
[2025-11-26 21:33:03] -rw-------. 1 boincer umatlas        95 Nov 26 21:33 pilot_heartbeat.json
[2025-11-26 21:33:03] -rw-------. 1 boincer umatlas       821 Nov 26 21:33 pilotlog.txt
[2025-11-26 21:33:03] -rw-------. 1 boincer umatlas   9047600 Nov 26 21:33 log.47556161._002988.job.log.1
[2025-11-26 21:33:03] -rw-------. 1 boincer umatlas       353 Nov 26 21:33 output.list
[2025-11-26 21:33:03] -rw-r--r--. 1 boincer umatlas       620 Nov 26 21:33 runtime_log
[2025-11-26 21:33:03] -rw-------. 1 boincer umatlas  11356160 Nov 26 21:33 result.tar.gz
[2025-11-26 21:33:03] -rw-------. 1 boincer umatlas       660 Nov 26 21:33 xQwKDmXbBi8n9Rq4apOajLDm4fhM0noT9bVo0NGKDm4hJKDmmz33bn.diag
[2025-11-26 21:33:03] -rw-r--r--. 1 boincer umatlas      9343 Nov 26 21:33 runtime_log.err
[2025-11-26 21:33:03] -rw-r--r--. 1 boincer umatlas     21281 Nov 26 21:33 stderr.txt
[2025-11-26 21:33:03] HITS file was successfully produced:
[2025-11-26 21:33:03] -rw-------. 1 boincer umatlas 934880452 Nov 26 21:30 shared/HITS.pool.root.1
[2025-11-26 21:33:03]  *** Contents of shared directory: ***
[2025-11-26 21:33:03] total 1325936
[2025-11-26 21:33:03] -rw-r--r--. 2 boincer umatlas 410896287 Nov 25 23:20 ATLAS.root_0
[2025-11-26 21:33:03] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 23:20 start_atlas.sh
[2025-11-26 21:33:03] -rw-r--r--. 2 boincer umatlas    590106 Nov 25 23:20 input.tar.gz
[2025-11-26 21:33:03] -rw-------. 1 boincer umatlas 934880452 Nov 26 21:30 HITS.pool.root.1
[2025-11-26 21:33:03] -rw-------. 1 boincer umatlas  11356160 Nov 26 21:33 result.tar.gz
21:33:06 (26185): run_atlas exited; CPU time 270297.047910
21:33:06 (26185): called boinc_finish(0)

</stderr_txt>
]]>

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