Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:00:53 (1886052): wrapper (7.7.26015): starting
00:00:53 (1886052): wrapper: running run_atlas (--nthreads 9)
[2025-11-26 00:00:53] Arguments: --nthreads 9
[2025-11-26 00:00:53] Threads: 9
[2025-11-26 00:00:53] Checking for CVMFS
[2025-11-26 00:00:53] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 00:00:53] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 00:00:53] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 00:00:54] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 00:00:54] 2.13.3.0 9358 27908 233172 153309 2 289 30301344 32935936 25266 16776704 0 146792987 99.786 79706684 33260 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-26 00:00:54] CVMFS is ok
[2025-11-26 00:00:54] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 00:00:54] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 00:00:54] Further information can be found at the LHC@home message board.
[2025-11-26 00:00:54] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 00:00:54] Checking for apptainer binary...
[2025-11-26 00:00:54] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 00:00:54] Running /usr/bin/apptainer --version
[2025-11-26 00:00:54] apptainer version 1.4.4-1.el9
[2025-11-26 00:00:54] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 00:00:54] c-6-6.aglt2.org
[2025-11-26 00:00:54] apptainer works
[2025-11-26 00:00:54] Set ATHENA_PROC_NUMBER=9
[2025-11-26 00:00:54] Set ATHENA_CORE_NUMBER=9
[2025-11-26 00:00:54] Starting ATLAS job with PandaID=6897510726
[2025-11-26 00:00:54] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 19:40:32]  *** The last 200 lines of the pilot log: ***
[2025-11-26 19:40:32] 2025-11-27 00:39:34,683 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-26 19:40:32] 2025-11-27 00:39:34,689 | INFO     | found 20 cores (10 cores per socket, 2 sockets) HT, CPU MHz: 2600.1344500000005
[2025-11-26 19:40:32] 2025-11-27 00:39:34,696 | INFO     | using path: /tmp/boinchome/slots/3/PanDA_Pilot-6897510726/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 19:40:32] 2025-11-27 00:39:34,697 | INFO     | extracted standard info from prmon json
[2025-11-26 19:40:32] 2025-11-27 00:39:34,697 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 19:40:32] 2025-11-27 00:39:34,697 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 19:40:32] 2025-11-27 00:39:34,718 | INFO     | fitting pss+swap vs Time
[2025-11-26 19:40:32] 2025-11-27 00:39:34,720 | INFO     | sum of square deviations: 481513209511.7969
[2025-11-26 19:40:32] 2025-11-27 00:39:34,753 | INFO     | sum of deviations: 3823238637750.032
[2025-11-26 19:40:32] 2025-11-27 00:39:34,754 | INFO     | mean x: 1764168619.4084628
[2025-11-26 19:40:32] 2025-11-27 00:39:34,754 | INFO     | mean y: 3078184.5474956823
[2025-11-26 19:40:32] 2025-11-27 00:39:34,754 | INFO     | intersect: -14004507684.316027
[2025-11-26 19:40:32] 2025-11-27 00:39:34,756 | INFO     | chi2: 7.162916649839369
[2025-11-26 19:40:32] 2025-11-27 00:39:34,757 | INFO     | sum of square deviations: 475303265090.15295
[2025-11-26 19:40:32] 2025-11-27 00:39:34,790 | INFO     | sum of deviations: 4184567993172.5244
[2025-11-26 19:40:32] 2025-11-27 00:39:34,791 | INFO     | mean x: 1764168466.9124024
[2025-11-26 19:40:32] 2025-11-27 00:39:34,791 | INFO     | mean y: 3087054.6487424113
[2025-11-26 19:40:32] 2025-11-27 00:39:34,791 | INFO     | intersect: -15528644880.341541
[2025-11-26 19:40:32] 2025-11-27 00:39:34,793 | INFO     | chi2: 4.65509758663904
[2025-11-26 19:40:32] 2025-11-27 00:39:34,793 | INFO     | current chi2=4.65509758663904 (change=35.01114400453854 %)
[2025-11-26 19:40:32] 2025-11-27 00:39:34,794 | INFO     | sum of square deviations: 469146949580.9719
[2025-11-26 19:40:32] 2025-11-27 00:39:34,829 | INFO     | sum of deviations: 4350300997960.5786
[2025-11-26 19:40:32] 2025-11-27 00:39:34,830 | INFO     | mean x: 1764168314.4163764
[2025-11-26 19:40:32] 2025-11-27 00:39:34,830 | INFO     | mean y: 3091156.479965157
[2025-11-26 19:40:32] 2025-11-27 00:39:34,830 | INFO     | intersect: -16355670603.840067
[2025-11-26 19:40:32] 2025-11-27 00:39:34,832 | INFO     | chi2: 3.9188825213616414
[2025-11-26 19:40:32] 2025-11-27 00:39:34,832 | INFO     | current chi2=3.9188825213616414 (change=15.815244505087653 %)
[2025-11-26 19:40:32] 2025-11-27 00:39:34,832 | INFO     | right removable region: 1147
[2025-11-26 19:40:32] 2025-11-27 00:39:34,834 | INFO     | sum of square deviations: 475302623370.1525
[2025-11-26 19:40:32] 2025-11-27 00:39:34,869 | INFO     | sum of deviations: 3402050045292.2188
[2025-11-26 19:40:32] 2025-11-27 00:39:34,870 | INFO     | mean x: 1764168771.9124024
[2025-11-26 19:40:32] 2025-11-27 00:39:34,870 | INFO     | mean y: 3088522.8239375544
[2025-11-26 19:40:32] 2025-11-27 00:39:34,870 | INFO     | intersect: -12624214915.629164
[2025-11-26 19:40:32] 2025-11-27 00:39:34,872 | INFO     | chi2: 4.2150488748499235
[2025-11-26 19:40:32] 2025-11-27 00:39:34,872 | INFO     | current chi2=4.2150488748499235 (change=41.15457318710462 %)
[2025-11-26 19:40:32] 2025-11-27 00:39:34,873 | INFO     | sum of square deviations: 469145736474.8042
[2025-11-26 19:40:32] 2025-11-27 00:39:34,907 | INFO     | sum of deviations: 3222679883154.3857
[2025-11-26 19:40:32] 2025-11-27 00:39:34,907 | INFO     | mean x: 1764168924.4155052
[2025-11-26 19:40:32] 2025-11-27 00:39:34,908 | INFO     | mean y: 3092961.4163763067
[2025-11-26 19:40:32] 2025-11-27 00:39:34,908 | INFO     | intersect: -12115426426.439756
[2025-11-26 19:40:32] 2025-11-27 00:39:34,909 | INFO     | chi2: 3.716288507027171
[2025-11-26 19:40:32] 2025-11-27 00:39:34,909 | INFO     | current chi2=3.716288507027171 (change=11.832848980677856 %)
[2025-11-26 19:40:32] 2025-11-27 00:39:34,909 | INFO     | left removable region: 20
[2025-11-26 19:40:32] 2025-11-27 00:39:34,911 | INFO     | sum of square deviations: 443868514615.178
[2025-11-26 19:40:32] 2025-11-27 00:39:34,943 | INFO     | sum of deviations: 3547588373636.4375
[2025-11-26 19:40:32] 2025-11-27 00:39:34,943 | INFO     | mean x: 1764168893.9281278
[2025-11-26 19:40:32] 2025-11-27 00:39:34,943 | INFO     | mean y: 3111693.7338065663
[2025-11-26 19:40:32] 2025-11-27 00:39:34,944 | INFO     | intersect: -14096886055.952198
[2025-11-26 19:40:32] 2025-11-27 00:39:34,945 | INFO     | chi2: 0.30061119183855173
[2025-11-26 19:40:32] 2025-11-27 00:39:34,945 | INFO     | current memory leak: 7.99 B/s (using 1127 data points, chi2=0.30)
[2025-11-26 19:40:32] 2025-11-27 00:39:34,946 | INFO     | could have reported an average CPU frequency of 2600 MHz (42 samples)
[2025-11-26 19:40:32] 2025-11-27 00:39:34,947 | INFO     | ..............................
[2025-11-26 19:40:32] 2025-11-27 00:39:34,947 | INFO     | . Timing measurements:
[2025-11-26 19:40:32] 2025-11-27 00:39:34,947 | INFO     | . get job = 0 s
[2025-11-26 19:40:32] 2025-11-27 00:39:34,947 | INFO     | . initial setup = 3 s
[2025-11-26 19:40:32] 2025-11-27 00:39:34,947 | INFO     | . payload setup = 9 s
[2025-11-26 19:40:32] 2025-11-27 00:39:34,947 | INFO     | . stage-in = 0 s
[2025-11-26 19:40:32] 2025-11-27 00:39:34,947 | INFO     | . payload execution = 70635 s
[2025-11-26 19:40:32] 2025-11-27 00:39:34,947 | INFO     | . stage-out = 3 s
[2025-11-26 19:40:32] 2025-11-27 00:39:34,948 | INFO     | . log creation = 0 s
[2025-11-26 19:40:32] 2025-11-27 00:39:34,948 | INFO     | ..............................
[2025-11-26 19:40:32] 2025-11-27 00:39:35,487 | INFO     | time since job start (70693s) is within the limit (172800.0s)
[2025-11-26 19:40:32] 2025-11-27 00:39:35,527 | INFO     | 
[2025-11-26 19:40:32] 2025-11-27 00:39:35,528 | INFO     | job summary report
[2025-11-26 19:40:32] 2025-11-27 00:39:35,528 | INFO     | --------------------------------------------------
[2025-11-26 19:40:32] 2025-11-27 00:39:35,528 | INFO     | PanDA job id: 6897510726
[2025-11-26 19:40:32] 2025-11-27 00:39:35,528 | INFO     | task id: 47556161
[2025-11-26 19:40:32] 2025-11-27 00:39:35,528 | INFO     | errors: (none)
[2025-11-26 19:40:32] 2025-11-27 00:39:35,528 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 19:40:32] 2025-11-27 00:39:35,529 | INFO     | pilot state: finished 
[2025-11-26 19:40:32] 2025-11-27 00:39:35,529 | INFO     | transexitcode: 0
[2025-11-26 19:40:32] 2025-11-27 00:39:35,529 | INFO     | exeerrorcode: 0
[2025-11-26 19:40:32] 2025-11-27 00:39:35,529 | INFO     | exeerrordiag: 
[2025-11-26 19:40:32] 2025-11-27 00:39:35,529 | INFO     | exitcode: 0
[2025-11-26 19:40:32] 2025-11-27 00:39:35,529 | INFO     | exitmsg: OK
[2025-11-26 19:40:32] 2025-11-27 00:39:35,529 | INFO     | cpuconsumptiontime: 310962 s
[2025-11-26 19:40:32] 2025-11-27 00:39:35,529 | INFO     | nevents: 1000
[2025-11-26 19:40:32] 2025-11-27 00:39:35,530 | INFO     | neventsw: 0
[2025-11-26 19:40:32] 2025-11-27 00:39:35,530 | INFO     | pid: 1898405
[2025-11-26 19:40:32] 2025-11-27 00:39:35,530 | INFO     | pgrp: 1898405
[2025-11-26 19:40:32] 2025-11-27 00:39:35,530 | INFO     | corecount: 9
[2025-11-26 19:40:32] 2025-11-27 00:39:35,530 | INFO     | event service: False
[2025-11-26 19:40:32] 2025-11-27 00:39:35,530 | INFO     | sizes: {0: 2284094, 1: 2284293, 12: 2284583, 23: 2284583, 70649: 2343974, 70652: 2352968, 70654: 2353152, 70661: 2353398}
[2025-11-26 19:40:32] 2025-11-27 00:39:35,530 | INFO     | --------------------------------------------------
[2025-11-26 19:40:32] 2025-11-27 00:39:35,530 | INFO     | 
[2025-11-26 19:40:32] 2025-11-27 00:39:35,531 | INFO     | executing command: ls -lF /tmp/boinchome/slots/3
[2025-11-26 19:40:32] 2025-11-27 00:39:35,554 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 19:40:32] 2025-11-27 00:39:35,554 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 19:40:32] 2025-11-27 00:39:35,554 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 19:40:32] 2025-11-27 00:39:35,554 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 19:40:32] 2025-11-27 00:39:35,554 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 19:40:32] 2025-11-27 00:39:35,554 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 19:40:32] 2025-11-27 00:39:35,555 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 19:40:32] 2025-11-27 00:39:35,555 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 19:40:32] 2025-11-27 00:39:35,555 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 19:40:32] 2025-11-27 00:39:35,555 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 19:40:32] 2025-11-27 00:39:35,555 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 19:40:32] 2025-11-27 00:39:35,555 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 19:40:32] 2025-11-27 00:39:35,555 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 19:40:32] 2025-11-27 00:39:35,555 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 19:40:32] 2025-11-27 00:39:35,555 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 19:40:32] 2025-11-27 00:39:35,555 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 19:40:32] 2025-11-27 00:39:35,556 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 19:40:32] 2025-11-27 00:39:35,556 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 19:40:32] 2025-11-27 00:39:35,556 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 19:40:32] 2025-11-27 00:39:35,556 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 19:40:32] 2025-11-27 00:39:35,556 | INFO     | job 6897510726 has completed (purged errors)
[2025-11-26 19:40:32] 2025-11-27 00:39:35,556 | INFO     | overall cleanup function is called
[2025-11-26 19:40:32] 2025-11-27 00:39:36,593 | INFO     | --- collectZombieJob: --- 10, [1898405]
[2025-11-26 19:40:32] 2025-11-27 00:39:36,593 | INFO     | zombie collector waiting for pid 1898405
[2025-11-26 19:40:32] 2025-11-27 00:39:36,594 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 19:40:32] 2025-11-27 00:39:36,594 | INFO     | collected zombie processes
[2025-11-26 19:40:32] 2025-11-27 00:39:36,594 | INFO     | will attempt to kill all subprocesses of pid=1898405
[2025-11-26 19:40:32] 2025-11-27 00:39:37,112 | INFO     | process IDs to be killed: [1898405] (in reverse order)
[2025-11-26 19:40:32] 2025-11-27 00:39:37,280 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 19:40:32] 2025-11-27 00:39:37,281 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 19:40:32] 2025-11-27 00:39:37,297 | INFO     | did not find any defunct processes belonging to 1898405
[2025-11-26 19:40:32] 2025-11-27 00:39:37,313 | INFO     | did not find any defunct processes belonging to 1898405
[2025-11-26 19:40:32] 2025-11-27 00:39:37,315 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 19:40:32] 2025-11-27 00:39:37,315 | INFO     | ready for new job
[2025-11-26 19:40:32] 2025-11-27 00:39:37,315 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 19:40:32] 2025-11-27 00:39:37,320 | INFO     | ***************************************
[2025-11-26 19:40:32] 2025-11-27 00:39:37,320 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 19:40:32] 2025-11-27 00:39:37,320 | INFO     | ***************************************
[2025-11-26 19:40:32] 2025-11-27 00:39:37,320 | INFO     | 
[2025-11-26 19:40:32] 2025-11-27 00:39:37,322 | INFO     | architecture information:
[2025-11-26 19:40:32] 2025-11-27 00:39:37,323 | INFO     | executing command: cat /etc/os-release
[2025-11-26 19:40:32] 2025-11-27 00:39:37,340 | INFO     | cat /etc/os-release:
[2025-11-26 19:40:32] NAME="CentOS Linux"
[2025-11-26 19:40:32] VERSION="7 (Core)"
[2025-11-26 19:40:32] ID="centos"
[2025-11-26 19:40:32] ID_LIKE="rhel fedora"
[2025-11-26 19:40:32] VERSION_ID="7"
[2025-11-26 19:40:32] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 19:40:32] ANSI_COLOR="0;31"
[2025-11-26 19:40:32] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 19:40:32] HOME_URL="https://www.centos.org/"
[2025-11-26 19:40:32] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 19:40:32] 
[2025-11-26 19:40:32] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 19:40:32] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 19:40:32] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 19:40:32] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 19:40:32] 
[2025-11-26 19:40:32] 2025-11-27 00:39:37,340 | INFO     | ***************************************
[2025-11-26 19:40:32] 2025-11-27 00:39:37,844 | INFO     | executing command: df -mP /tmp/boinchome/slots/3
[2025-11-26 19:40:32] 2025-11-27 00:39:37,862 | INFO     | sufficient remaining disk space (72596062208 B)
[2025-11-26 19:40:32] 2025-11-27 00:39:37,863 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 19:40:32] 2025-11-27 00:39:37,863 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 19:40:32] 2025-11-27 00:39:37,863 | INFO     | update_server=False
[2025-11-26 19:40:32] 2025-11-27 00:39:37,863 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 19:40:32] 2025-11-27 00:39:37,863 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 19:40:32] 2025-11-27 00:39:38,033 | INFO     | all data control threads have been joined
[2025-11-26 19:40:32] 2025-11-27 00:39:38,160 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-26 19:40:32] 2025-11-27 00:39:38,160 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-26 19:40:32] 2025-11-27 00:39:38,160 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 19:40:32] 2025-11-27 00:39:38,160 | INFO     | will abort loop
[2025-11-26 19:40:32] 2025-11-27 00:39:38,244 | INFO     | all payload control threads have been joined
[2025-11-26 19:40:32] 2025-11-27 00:39:38,453 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 19:40:32] 2025-11-27 00:39:38,816 | INFO     | all job control threads have been joined
[2025-11-26 19:40:32] 2025-11-27 00:39:38,869 | INFO     | [job] retrieve thread has finished
[2025-11-26 19:40:32] 2025-11-27 00:39:39,039 | INFO     | [data] control thread has finished
[2025-11-26 19:40:32] 2025-11-27 00:39:39,089 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 19:40:32] 2025-11-27 00:39:39,089 | INFO     | [data] copytool_in thread has finished
[2025-11-26 19:40:32] 2025-11-27 00:39:39,166 | INFO     | [job] job monitor thread has finished
[2025-11-26 19:40:32] 2025-11-27 00:39:39,249 | INFO     | [payload] control thread has finished
[2025-11-26 19:40:32] 2025-11-27 00:39:39,396 | INFO     | [payload] failed_post thread has finished
[2025-11-26 19:40:32] 2025-11-27 00:39:39,453 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 19:40:32] 2025-11-27 00:39:39,466 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 19:40:32] 2025-11-27 00:39:39,821 | INFO     | [job] control thread has finished
[2025-11-26 19:40:32] 2025-11-27 00:39:39,869 | INFO     | [data] copytool_out thread has finished
[2025-11-26 19:40:32] 2025-11-27 00:39:39,900 | INFO     | [payload] validate_post thread has finished
[2025-11-26 19:40:32] 2025-11-27 00:39:40,070 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 19:40:32] 2025-11-27 00:39:40,319 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 19:40:32] 2025-11-27 00:39:40,340 | INFO     | [job] validate thread has finished
[2025-11-26 19:40:32] 2025-11-27 00:39:41,075 | INFO     | [job] queue monitor thread has finished
[2025-11-26 19:40:32] 2025-11-27 00:39:42,461 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 19:40:32] 2025-11-27 00:40:09,071 | INFO     | PID=1889888 has CPU usage=8.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-26 19:40:32] 2025-11-27 00:40:09,072 | INFO     | .. there are 42 such processes running
[2025-11-26 19:40:32] 2025-11-27 00:40:09,072 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 19:40:32] 2025-11-27 00:40:09,072 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 19:40:32] 2025-11-27 00:40:09,072 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 19:40:32] 2025-11-27 00:40:25,361 | INFO     | [monitor] cgroup control has ended
[2025-11-26 19:40:32] 2025-11-27 00:40:26,193 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140129414408000)>', '<ExcThread(monitor, started 140128391517952)>']
[2025-11-26 19:40:32] 2025-11-27 00:40:27,181 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 19:40:32] 2025-11-27 00:40:27,181 | INFO     | [monitor] control thread has ended
[2025-11-26 19:40:32] 2025-11-27 00:40:31,219 | INFO     | all workflow threads have been joined
[2025-11-26 19:40:32] 2025-11-27 00:40:31,219 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 19:40:32] 2025-11-27 00:40:31,219 | INFO     | traces error code: 0
[2025-11-26 19:40:32] 2025-11-27 00:40:31,220 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 19:40:32] 2025-11-27 00:40:31,544 [wrapper] ==== pilot stdout END ====
[2025-11-26 19:40:32] 2025-11-27 00:40:31,564 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 19:40:32] 2025-11-27 00:40:31,586 [wrapper] pilotpid: 1889888
[2025-11-26 19:40:32] 2025-11-27 00:40:31,601 [wrapper] Pilot exit status: 0
[2025-11-26 19:40:32] 2025-11-27 00:40:31,679 [wrapper] pandaids: 6897510726
[2025-11-26 19:40:32] 2025-11-27 00:40:31,950 [wrapper] cleanup supervisor_pilot 2108945 1889889
[2025-11-26 19:40:32] 2025-11-27 00:40:31,955 [wrapper] Test setup, not cleaning
[2025-11-26 19:40:32] 2025-11-27 00:40:31,958 [wrapper] apfmon messages muted
[2025-11-26 19:40:32] 2025-11-27 00:40:31,966 [wrapper] ==== wrapper stdout END ====
[2025-11-26 19:40:32] 2025-11-27 00:40:31,970 [wrapper] ==== wrapper stderr END ====
[2025-11-26 19:40:32]  *** Error codes and diagnostics ***
[2025-11-26 19:40:32]     "exeErrorCode": 0,
[2025-11-26 19:40:32]     "exeErrorDiag": "",
[2025-11-26 19:40:32]     "pilotErrorCode": 0,
[2025-11-26 19:40:32]     "pilotErrorDiag": "",
[2025-11-26 19:40:32]  *** Listing of results directory ***
[2025-11-26 19:40:32] total 1342692
[2025-11-26 19:40:32] -rw-r--r--. 1 boincer umatlas    576529 Nov 25 11:48 pilot3.tar.gz
[2025-11-26 19:40:32] -rwx------. 1 boincer umatlas     36292 Nov 25 12:01 runpilot2-wrapper.sh
[2025-11-26 19:40:32] -rw-r--r--. 1 boincer umatlas      5112 Nov 25 12:02 queuedata.json
[2025-11-26 19:40:32] -rw-r--r--. 1 boincer umatlas       100 Nov 26 00:00 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 19:40:32] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 26 00:00 run_atlas
[2025-11-26 19:40:32] -rw-r--r--. 1 boincer umatlas       105 Nov 26 00:00 job.xml
[2025-11-26 19:40:32] -rw-r--r--. 2 boincer umatlas 412870764 Nov 26 00:00 EVNT.47483658._002296.pool.root.1
[2025-11-26 19:40:32] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 00:00 start_atlas.sh
[2025-11-26 19:40:32] drwxrwx--x. 2 boincer umatlas      4096 Nov 26 00:00 shared
[2025-11-26 19:40:32] -rw-r--r--. 2 boincer umatlas    590110 Nov 26 00:00 input.tar.gz
[2025-11-26 19:40:32] -rw-r--r--. 1 boincer umatlas         0 Nov 26 00:00 boinc_lockfile
[2025-11-26 19:40:32] -rw-r--r--. 1 boincer umatlas      2786 Nov 26 00:00 pandaJob.out
[2025-11-26 19:40:32] -rw-------. 1 boincer umatlas        57 Nov 26 00:00 setup.sh.local
[2025-11-26 19:40:32] -rw-------. 1 boincer umatlas    991877 Nov 26 00:01 agis_schedconf.cvmfs.json
[2025-11-26 19:40:32] drwx------. 5 boincer umatlas      4096 Nov 26 00:01 pilot3
[2025-11-26 19:40:32] -rw-r--r--. 1 boincer umatlas       533 Nov 26 19:27 boinc_task_state.xml
[2025-11-26 19:40:32] -rw-r--r--. 1 boincer umatlas      6659 Nov 26 19:38 init_data.xml
[2025-11-26 19:40:32] -rw-------. 1 boincer umatlas 934053353 Nov 26 19:38 HITS.47556161._002798.pool.root.1
[2025-11-26 19:40:32] -rw-------. 1 boincer umatlas      1064 Nov 26 19:39 memory_monitor_summary.json
[2025-11-26 19:40:32] -rw-------. 1 boincer umatlas        95 Nov 26 19:39 pilot_heartbeat.json
[2025-11-26 19:40:32] -rw-------. 1 boincer umatlas   1516240 Nov 26 19:39 agis_ddmendpoints.agis.ALL.json
[2025-11-26 19:40:32] -rw-------. 1 boincer umatlas   2424536 Nov 26 19:39 log.47556161._002798.job.log.tgz.1
[2025-11-26 19:40:32] -rw-------. 1 boincer umatlas      8627 Nov 26 19:39 heartbeat.json
[2025-11-26 19:40:32] -rw-r--r--. 1 boincer umatlas        29 Nov 26 19:40 wrapper_checkpoint.txt
[2025-11-26 19:40:32] -rw-r--r--. 1 boincer umatlas      8192 Nov 26 19:40 boinc_mmap_file
[2025-11-26 19:40:32] -rw-------. 1 boincer umatlas      5010 Nov 26 19:40 pilotlog.txt
[2025-11-26 19:40:32] -rw-------. 1 boincer umatlas   9612640 Nov 26 19:40 log.47556161._002798.job.log.1
[2025-11-26 19:40:32] -rw-------. 1 boincer umatlas       353 Nov 26 19:40 output.list
[2025-11-26 19:40:32] -rw-r--r--. 1 boincer umatlas       620 Nov 26 19:40 runtime_log
[2025-11-26 19:40:32] -rw-------. 1 boincer umatlas  12052480 Nov 26 19:40 result.tar.gz
[2025-11-26 19:40:32] -rw-r--r--. 1 boincer umatlas      9328 Nov 26 19:40 runtime_log.err
[2025-11-26 19:40:32] -rw-------. 1 boincer umatlas       657 Nov 26 19:40 OiEMDmJbBi8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmxgJKDmC254Ym.diag
[2025-11-26 19:40:32] -rw-r--r--. 1 boincer umatlas     21319 Nov 26 19:40 stderr.txt
[2025-11-26 19:40:32] HITS file was successfully produced:
[2025-11-26 19:40:32] -rw-------. 1 boincer umatlas 934053353 Nov 26 19:38 shared/HITS.pool.root.1
[2025-11-26 19:40:32]  *** Contents of shared directory: ***
[2025-11-26 19:40:32] total 1327736
[2025-11-26 19:40:32] -rw-r--r--. 2 boincer umatlas 412870764 Nov 26 00:00 ATLAS.root_0
[2025-11-26 19:40:32] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 00:00 start_atlas.sh
[2025-11-26 19:40:32] -rw-r--r--. 2 boincer umatlas    590110 Nov 26 00:00 input.tar.gz
[2025-11-26 19:40:32] -rw-------. 1 boincer umatlas 934053353 Nov 26 19:38 HITS.pool.root.1
[2025-11-26 19:40:32] -rw-------. 1 boincer umatlas  12052480 Nov 26 19:40 result.tar.gz
19:40:33 (1886052): run_atlas exited; CPU time 312966.983512
19:40:33 (1886052): called boinc_finish(0)

</stderr_txt>
]]>

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