Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:00:24 (1770181): wrapper (7.7.26015): starting
00:00:24 (1770181): wrapper: running run_atlas (--nthreads 12)
[2025-11-26 00:00:24] Arguments: --nthreads 12
[2025-11-26 00:00:24] Threads: 12
[2025-11-26 00:00:24] Checking for CVMFS
[2025-11-26 00:00:24] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 00:00:25] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 00:00:25] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 00:00:25] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 00:00:25] 2.13.2.0 8544 33930 174516 153309 0 305 37588320 40960001 20327 16776704 0 71813485 99.793 36992733 38197 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-26 00:00:25] CVMFS is ok
[2025-11-26 00:00:25] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 00:00:25] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 00:00:25] Further information can be found at the LHC@home message board.
[2025-11-26 00:00:26] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 00:00:26] Checking for apptainer binary...
[2025-11-26 00:00:26] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 00:00:26] Running /usr/bin/apptainer --version
[2025-11-26 00:00:26] apptainer version 1.4.4-1.el9
[2025-11-26 00:00:26] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 00:00:26] c-212-10.aglt2.org
[2025-11-26 00:00:26] apptainer works
[2025-11-26 00:00:26] Set ATHENA_PROC_NUMBER=12
[2025-11-26 00:00:26] Set ATHENA_CORE_NUMBER=12
[2025-11-26 00:00:26] Starting ATLAS job with PandaID=6897531581
[2025-11-26 00:00:26] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 20:47:28]  *** The last 200 lines of the pilot log: ***
[2025-11-26 20:47:28] 2025-11-27 01:46:29,504 | INFO     | time since job start (74720s) is within the limit (172800.0s)
[2025-11-26 20:47:28] 2025-11-27 01:46:29,695 | INFO     | monitor loop #4512: job 0:6897531581 is in state 'finished'
[2025-11-26 20:47:28] 2025-11-27 01:46:29,695 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 20:47:28] 2025-11-27 01:46:32,221 | INFO     | monitor loop #4513: job 0:6897531581 is in state 'finished'
[2025-11-26 20:47:28] 2025-11-27 01:46:32,221 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 20:47:28] 2025-11-27 01:46:33,638 | INFO     | PID=1775213 has CPU usage=14.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-11-26 20:47:28] 2025-11-27 01:46:33,638 | INFO     | .. there are 18 such processes running
[2025-11-26 20:47:28] 2025-11-27 01:46:34,639 | INFO     | time since job start (74725s) is within the limit (172800.0s)
[2025-11-26 20:47:28] 2025-11-27 01:46:34,736 | INFO     | monitor loop #4514: job 0:6897531581 is in state 'finished'
[2025-11-26 20:47:28] 2025-11-27 01:46:34,736 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 20:47:28] 2025-11-27 01:46:36,646 | INFO     | time since job start (74727s) is within the limit (172800.0s)
[2025-11-26 20:47:28] 2025-11-27 01:46:37,241 | INFO     | monitor loop #4515: job 0:6897531581 is in state 'finished'
[2025-11-26 20:47:28] 2025-11-27 01:46:37,241 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 20:47:28] 2025-11-27 01:46:38,653 | INFO     | time since job start (74729s) is within the limit (172800.0s)
[2025-11-26 20:47:28] 2025-11-27 01:46:39,746 | INFO     | monitor loop #4516: job 0:6897531581 is in state 'finished'
[2025-11-26 20:47:28] 2025-11-27 01:46:39,746 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 20:47:28] 2025-11-27 01:46:40,522 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-26 20:47:28] 2025-11-27 01:46:40,528 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2979.514927083334
[2025-11-26 20:47:28] 2025-11-27 01:46:40,543 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6897531581/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 20:47:28] 2025-11-27 01:46:40,544 | INFO     | extracted standard info from prmon json
[2025-11-26 20:47:28] 2025-11-27 01:46:40,544 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 20:47:28] 2025-11-27 01:46:40,544 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 20:47:28] 2025-11-27 01:46:40,631 | INFO     | fitting pss+swap vs Time
[2025-11-26 20:47:28] 2025-11-27 01:46:40,651 | INFO     | sum of square deviations: 568601485331.9009
[2025-11-26 20:47:28] 2025-11-27 01:46:40,693 | INFO     | time since job start (74731s) is within the limit (172800.0s)
[2025-11-26 20:47:28] 2025-11-27 01:46:40,856 | INFO     | sum of deviations: 3576075315685.216
[2025-11-26 20:47:28] 2025-11-27 01:46:40,856 | INFO     | mean x: 1764170662.241013
[2025-11-26 20:47:28] 2025-11-27 01:46:40,856 | INFO     | mean y: 3455004.79248366
[2025-11-26 20:47:28] 2025-11-27 01:46:40,856 | INFO     | intersect: -11091850443.123442
[2025-11-26 20:47:28] 2025-11-27 01:46:40,858 | INFO     | chi2: 21.373932255946446
[2025-11-26 20:47:28] 2025-11-27 01:46:40,877 | INFO     | sum of square deviations: 561662172591.6841
[2025-11-26 20:47:28] 2025-11-27 01:46:41,097 | INFO     | sum of deviations: 4107535510508.1455
[2025-11-26 20:47:28] 2025-11-27 01:46:41,098 | INFO     | mean x: 1764170509.7481542
[2025-11-26 20:47:28] 2025-11-27 01:46:41,098 | INFO     | mean y: 3466681.0623461856
[2025-11-26 20:47:28] 2025-11-27 01:46:41,098 | INFO     | intersect: -12898226487.884188
[2025-11-26 20:47:28] 2025-11-27 01:46:41,099 | INFO     | chi2: 17.59209032596317
[2025-11-26 20:47:28] 2025-11-27 01:46:41,099 | INFO     | current chi2=17.59209032596317 (change=17.693711595493287 %)
[2025-11-26 20:47:28] 2025-11-27 01:46:41,100 | INFO     | right removable region: 1218
[2025-11-26 20:47:28] 2025-11-27 01:46:41,101 | INFO     | sum of square deviations: 561660872681.684
[2025-11-26 20:47:28] 2025-11-27 01:46:41,315 | INFO     | sum of deviations: 2984531494997.4663
[2025-11-26 20:47:28] 2025-11-27 01:46:41,332 | INFO     | mean x: 1764170814.7481542
[2025-11-26 20:47:28] 2025-11-27 01:46:41,332 | INFO     | mean y: 3468001.0959803117
[2025-11-26 20:47:28] 2025-11-27 01:46:41,333 | INFO     | intersect: -9370913614.68594
[2025-11-26 20:47:28] 2025-11-27 01:46:41,334 | INFO     | chi2: 17.238198565982167
[2025-11-26 20:47:28] 2025-11-27 01:46:41,334 | INFO     | current chi2=17.238198565982167 (change=19.34942826822929 %)
[2025-11-26 20:47:28] 2025-11-27 01:46:41,334 | INFO     | left removable region: 10
[2025-11-26 20:47:28] 2025-11-27 01:46:41,336 | INFO     | sum of square deviations: 546592336850.7602
[2025-11-26 20:47:28] 2025-11-27 01:46:41,532 | INFO     | sum of deviations: 3124349663023.1353
[2025-11-26 20:47:28] 2025-11-27 01:46:41,532 | INFO     | mean x: 1764170784.264073
[2025-11-26 20:47:28] 2025-11-27 01:46:41,532 | INFO     | mean y: 3493529.447847682
[2025-11-26 20:47:28] 2025-11-27 01:46:41,532 | INFO     | intersect: -10080596611.822582
[2025-11-26 20:47:28] 2025-11-27 01:46:41,534 | INFO     | chi2: 9.679030873963553
[2025-11-26 20:47:28] 2025-11-27 01:46:41,534 | INFO     | current memory leak: 5.72 B/s (using 1208 data points, chi2=9.68)
[2025-11-26 20:47:28] 2025-11-27 01:46:41,557 | INFO     | could have reported an average CPU frequency of 3058 MHz (44 samples)
[2025-11-26 20:47:28] 2025-11-27 01:46:41,557 | INFO     | ..............................
[2025-11-26 20:47:28] 2025-11-27 01:46:41,558 | INFO     | . Timing measurements:
[2025-11-26 20:47:28] 2025-11-27 01:46:41,558 | INFO     | . get job = 0 s
[2025-11-26 20:47:28] 2025-11-27 01:46:41,558 | INFO     | . initial setup = 5 s
[2025-11-26 20:47:28] 2025-11-27 01:46:41,558 | INFO     | . payload setup = 19 s
[2025-11-26 20:47:28] 2025-11-27 01:46:41,558 | INFO     | . stage-in = 0 s
[2025-11-26 20:47:28] 2025-11-27 01:46:41,558 | INFO     | . payload execution = 74625 s
[2025-11-26 20:47:28] 2025-11-27 01:46:41,558 | INFO     | . stage-out = 12 s
[2025-11-26 20:47:28] 2025-11-27 01:46:41,558 | INFO     | . log creation = 3 s
[2025-11-26 20:47:28] 2025-11-27 01:46:41,558 | INFO     | ..............................
[2025-11-26 20:47:28] 2025-11-27 01:46:42,028 | INFO     | 
[2025-11-26 20:47:28] 2025-11-27 01:46:42,028 | INFO     | job summary report
[2025-11-26 20:47:28] 2025-11-27 01:46:42,029 | INFO     | --------------------------------------------------
[2025-11-26 20:47:28] 2025-11-27 01:46:42,029 | INFO     | PanDA job id: 6897531581
[2025-11-26 20:47:28] 2025-11-27 01:46:42,029 | INFO     | task id: 47556161
[2025-11-26 20:47:28] 2025-11-27 01:46:42,029 | INFO     | errors: (none)
[2025-11-26 20:47:28] 2025-11-27 01:46:42,029 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 20:47:28] 2025-11-27 01:46:42,029 | INFO     | pilot state: finished 
[2025-11-26 20:47:28] 2025-11-27 01:46:42,029 | INFO     | transexitcode: 0
[2025-11-26 20:47:28] 2025-11-27 01:46:42,029 | INFO     | exeerrorcode: 0
[2025-11-26 20:47:28] 2025-11-27 01:46:42,029 | INFO     | exeerrordiag: 
[2025-11-26 20:47:28] 2025-11-27 01:46:42,029 | INFO     | exitcode: 0
[2025-11-26 20:47:28] 2025-11-27 01:46:42,029 | INFO     | exitmsg: OK
[2025-11-26 20:47:28] 2025-11-27 01:46:42,029 | INFO     | cpuconsumptiontime: 212759 s
[2025-11-26 20:47:28] 2025-11-27 01:46:42,030 | INFO     | nevents: 1000
[2025-11-26 20:47:28] 2025-11-27 01:46:42,030 | INFO     | neventsw: 0
[2025-11-26 20:47:28] 2025-11-27 01:46:42,030 | INFO     | pid: 1781759
[2025-11-26 20:47:28] 2025-11-27 01:46:42,030 | INFO     | pgrp: 1781759
[2025-11-26 20:47:28] 2025-11-27 01:46:42,030 | INFO     | corecount: 12
[2025-11-26 20:47:28] 2025-11-27 01:46:42,030 | INFO     | event service: False
[2025-11-26 20:47:28] 2025-11-27 01:46:42,030 | INFO     | sizes: {0: 2284094, 1: 2284293, 12: 2284293, 23: 2284321, 27: 2284611, 34: 2284639, 74646: 2344341, 74660: 2353335, 74661: 2353391, 74679: 2353637}
[2025-11-26 20:47:28] 2025-11-27 01:46:42,030 | INFO     | --------------------------------------------------
[2025-11-26 20:47:28] 2025-11-27 01:46:42,030 | INFO     | 
[2025-11-26 20:47:28] 2025-11-27 01:46:42,030 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-11-26 20:47:28] 2025-11-27 01:46:42,184 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 20:47:28] 2025-11-27 01:46:42,185 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 20:47:28] 2025-11-27 01:46:42,185 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 20:47:28] 2025-11-27 01:46:42,185 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 20:47:28] 2025-11-27 01:46:42,185 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 20:47:28] 2025-11-27 01:46:42,185 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 20:47:28] 2025-11-27 01:46:42,185 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 20:47:28] 2025-11-27 01:46:42,185 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 20:47:28] 2025-11-27 01:46:42,185 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 20:47:28] 2025-11-27 01:46:42,185 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 20:47:28] 2025-11-27 01:46:42,185 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 20:47:28] 2025-11-27 01:46:42,186 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 20:47:28] 2025-11-27 01:46:42,186 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 20:47:28] 2025-11-27 01:46:42,186 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 20:47:28] 2025-11-27 01:46:42,186 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 20:47:28] 2025-11-27 01:46:42,186 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 20:47:28] 2025-11-27 01:46:42,186 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 20:47:28] 2025-11-27 01:46:42,186 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 20:47:28] 2025-11-27 01:46:42,186 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 20:47:28] 2025-11-27 01:46:42,186 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 20:47:28] 2025-11-27 01:46:42,186 | INFO     | job 6897531581 has completed (purged errors)
[2025-11-26 20:47:28] 2025-11-27 01:46:42,187 | INFO     | overall cleanup function is called
[2025-11-26 20:47:28] 2025-11-27 01:46:43,297 | INFO     | --- collectZombieJob: --- 10, [1781759]
[2025-11-26 20:47:28] 2025-11-27 01:46:43,297 | INFO     | zombie collector waiting for pid 1781759
[2025-11-26 20:47:28] 2025-11-27 01:46:43,297 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 20:47:28] 2025-11-27 01:46:43,298 | INFO     | collected zombie processes
[2025-11-26 20:47:28] 2025-11-27 01:46:43,298 | INFO     | will attempt to kill all subprocesses of pid=1781759
[2025-11-26 20:47:28] 2025-11-27 01:46:46,048 | INFO     | process IDs to be killed: [1781759] (in reverse order)
[2025-11-26 20:47:28] 2025-11-27 01:46:46,805 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 20:47:28] 2025-11-27 01:46:46,805 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 20:47:28] 2025-11-27 01:46:46,895 | INFO     | did not find any defunct processes belonging to 1781759
[2025-11-26 20:47:28] 2025-11-27 01:46:46,958 | INFO     | did not find any defunct processes belonging to 1781759
[2025-11-26 20:47:28] 2025-11-27 01:46:46,980 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 20:47:28] 2025-11-27 01:46:46,980 | INFO     | ready for new job
[2025-11-26 20:47:28] 2025-11-27 01:46:46,980 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 20:47:28] 2025-11-27 01:46:46,998 | INFO     | ***************************************
[2025-11-26 20:47:28] 2025-11-27 01:46:46,999 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 20:47:28] 2025-11-27 01:46:46,999 | INFO     | ***************************************
[2025-11-26 20:47:28] 2025-11-27 01:46:46,999 | INFO     | 
[2025-11-26 20:47:28] 2025-11-27 01:46:47,040 | INFO     | architecture information:
[2025-11-26 20:47:28] 2025-11-27 01:46:47,052 | INFO     | executing command: cat /etc/os-release
[2025-11-26 20:47:28] 2025-11-27 01:46:47,166 | INFO     | cat /etc/os-release:
[2025-11-26 20:47:28] NAME="CentOS Linux"
[2025-11-26 20:47:28] VERSION="7 (Core)"
[2025-11-26 20:47:28] ID="centos"
[2025-11-26 20:47:28] ID_LIKE="rhel fedora"
[2025-11-26 20:47:28] VERSION_ID="7"
[2025-11-26 20:47:28] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 20:47:28] ANSI_COLOR="0;31"
[2025-11-26 20:47:28] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 20:47:28] HOME_URL="https://www.centos.org/"
[2025-11-26 20:47:28] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 20:47:28] 
[2025-11-26 20:47:28] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 20:47:28] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 20:47:28] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 20:47:28] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 20:47:28] 
[2025-11-26 20:47:28] 2025-11-27 01:46:47,167 | INFO     | ***************************************
[2025-11-26 20:47:28] 2025-11-27 01:46:47,683 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-11-26 20:47:28] 2025-11-27 01:46:47,863 | INFO     | sufficient remaining disk space (122717995008 B)
[2025-11-26 20:47:28] 2025-11-27 01:46:47,863 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 20:47:28] 2025-11-27 01:46:47,863 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 20:47:28] 2025-11-27 01:46:47,863 | INFO     | update_server=False
[2025-11-26 20:47:28] 2025-11-27 01:46:47,863 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 20:47:28] 2025-11-27 01:46:47,864 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 20:47:28] 2025-11-27 01:46:47,917 | INFO     | all job control threads have been joined
[2025-11-26 20:47:28] 2025-11-27 01:46:48,138 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 20:47:28] 2025-11-27 01:46:48,379 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 20:47:28] 2025-11-27 01:46:48,379 | INFO     | aborting loop
[2025-11-26 20:47:28] 2025-11-27 01:46:48,839 | INFO     | all data control threads have been joined
[2025-11-26 20:47:28] 2025-11-27 01:46:48,862 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 20:47:28] 2025-11-27 01:46:48,869 | INFO     | [job] retrieve thread has finished
[2025-11-26 20:47:28] 2025-11-27 01:46:48,870 | INFO     | [job] queue monitor thread has finished
[2025-11-26 20:47:28] 2025-11-27 01:46:48,923 | INFO     | [job] control thread has finished
[2025-11-26 20:47:28] 2025-11-27 01:46:48,959 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 20:47:28] 2025-11-27 01:46:48,978 | INFO     | all payload control threads have been joined
[2025-11-26 20:47:28] 2025-11-27 01:46:49,004 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 20:47:28] 2025-11-27 01:46:49,082 | INFO     | [data] copytool_in thread has finished
[2025-11-26 20:47:28] 2025-11-27 01:46:49,251 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 20:47:28] 2025-11-27 01:46:49,291 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 20:47:28] 2025-11-27 01:46:49,385 | INFO     | [job] job monitor thread has finished
[2025-11-26 20:47:28] 2025-11-27 01:46:49,486 | INFO     | [job] validate thread has finished
[2025-11-26 20:47:28] 2025-11-27 01:46:49,566 | INFO     | [payload] failed_post thread has finished
[2025-11-26 20:47:28] 2025-11-27 01:46:49,845 | INFO     | [data] control thread has finished
[2025-11-26 20:47:28] 2025-11-27 01:46:49,984 | INFO     | [payload] control thread has finished
[2025-11-26 20:47:28] 2025-11-27 01:46:50,071 | INFO     | [payload] validate_post thread has finished
[2025-11-26 20:47:28] 2025-11-27 01:46:50,869 | INFO     | [data] copytool_out thread has finished
[2025-11-26 20:47:28] 2025-11-27 01:46:52,149 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 20:47:28] 2025-11-27 01:47:17,174 | INFO     | PID=1775213 has CPU usage=3.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-26 20:47:28] 2025-11-27 01:47:17,174 | INFO     | .. there are 18 such processes running
[2025-11-26 20:47:28] 2025-11-27 01:47:17,175 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 20:47:28] 2025-11-27 01:47:17,176 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 20:47:28] 2025-11-27 01:47:17,176 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 20:47:28] 2025-11-27 01:47:22,381 | INFO     | [monitor] cgroup control has ended
[2025-11-26 20:47:28] 2025-11-27 01:47:22,559 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140537871775552)>', '<ExcThread(monitor, started 140537160001280)>']
[2025-11-26 20:47:28] 2025-11-27 01:47:23,211 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 20:47:28] 2025-11-27 01:47:23,211 | INFO     | [monitor] control thread has ended
[2025-11-26 20:47:28] 2025-11-27 01:47:27,600 | INFO     | all workflow threads have been joined
[2025-11-26 20:47:28] 2025-11-27 01:47:27,600 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 20:47:28] 2025-11-27 01:47:27,601 | INFO     | traces error code: 0
[2025-11-26 20:47:28] 2025-11-27 01:47:27,601 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 20:47:28] 2025-11-27 01:47:28,138 [wrapper] ==== pilot stdout END ====
[2025-11-26 20:47:28] 2025-11-27 01:47:28,182 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 20:47:28] 2025-11-27 01:47:28,244 [wrapper] pilotpid: 1775213
[2025-11-26 20:47:28] 2025-11-27 01:47:28,304 [wrapper] Pilot exit status: 0
[2025-11-26 20:47:28] 2025-11-27 01:47:28,386 [wrapper] pandaids: 6897531581
[2025-11-26 20:47:28] 2025-11-27 01:47:28,481 [wrapper] cleanup supervisor_pilot  291124 1775214
[2025-11-26 20:47:28] 2025-11-27 01:47:28,484 [wrapper] Test setup, not cleaning
[2025-11-26 20:47:28] 2025-11-27 01:47:28,486 [wrapper] apfmon messages muted
[2025-11-26 20:47:28] 2025-11-27 01:47:28,489 [wrapper] ==== wrapper stdout END ====
[2025-11-26 20:47:28] 2025-11-27 01:47:28,491 [wrapper] ==== wrapper stderr END ====
[2025-11-26 20:47:28]  *** Error codes and diagnostics ***
[2025-11-26 20:47:28]     "exeErrorCode": 0,
[2025-11-26 20:47:28]     "exeErrorDiag": "",
[2025-11-26 20:47:28]     "pilotErrorCode": 0,
[2025-11-26 20:47:28]     "pilotErrorDiag": "",
[2025-11-26 20:47:28]  *** Listing of results directory ***
[2025-11-26 20:47:28] total 1334904
[2025-11-26 20:47:28] -rw-r--r--. 1 boincer umatlas    576529 Nov 25 11:48 pilot3.tar.gz
[2025-11-26 20:47:28] -rwx------. 1 boincer umatlas     36292 Nov 25 12:01 runpilot2-wrapper.sh
[2025-11-26 20:47:28] -rw-r--r--. 1 boincer umatlas      5112 Nov 25 12:02 queuedata.json
[2025-11-26 20:47:28] -rw-r--r--. 1 boincer umatlas       100 Nov 26 00:00 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 20:47:28] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 26 00:00 run_atlas
[2025-11-26 20:47:28] -rw-r--r--. 1 boincer umatlas       105 Nov 26 00:00 job.xml
[2025-11-26 20:47:28] -rw-r--r--. 2 boincer umatlas 411577615 Nov 26 00:00 EVNT.47483658._002303.pool.root.1
[2025-11-26 20:47:28] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 00:00 start_atlas.sh
[2025-11-26 20:47:28] drwxrwx--x. 2 boincer umatlas      4096 Nov 26 00:00 shared
[2025-11-26 20:47:28] -rw-r--r--. 2 boincer umatlas    590108 Nov 26 00:00 input.tar.gz
[2025-11-26 20:47:28] -rw-r--r--. 1 boincer umatlas         0 Nov 26 00:00 boinc_lockfile
[2025-11-26 20:47:28] -rw-r--r--. 1 boincer umatlas      2786 Nov 26 00:00 pandaJob.out
[2025-11-26 20:47:28] -rw-------. 1 boincer umatlas        57 Nov 26 00:00 setup.sh.local
[2025-11-26 20:47:28] -rw-------. 1 boincer umatlas    991877 Nov 26 00:01 agis_schedconf.cvmfs.json
[2025-11-26 20:47:28] drwx------. 5 boincer umatlas      4096 Nov 26 00:01 pilot3
[2025-11-26 20:47:28] -rw-r--r--. 1 boincer umatlas       533 Nov 26 19:47 boinc_task_state.xml
[2025-11-26 20:47:28] -rw-------. 1 boincer umatlas 926961436 Nov 26 20:44 HITS.47556161._002866.pool.root.1
[2025-11-26 20:47:28] -rw-------. 1 boincer umatlas      1074 Nov 26 20:46 memory_monitor_summary.json
[2025-11-26 20:47:28] -rw-------. 1 boincer umatlas   1516240 Nov 26 20:46 agis_ddmendpoints.agis.ALL.json
[2025-11-26 20:47:28] -rw-------. 1 boincer umatlas   2762444 Nov 26 20:46 log.47556161._002866.job.log.tgz.1
[2025-11-26 20:47:28] -rw-------. 1 boincer umatlas      8641 Nov 26 20:46 heartbeat.json
[2025-11-26 20:47:28] -rw-------. 1 boincer umatlas        95 Nov 26 20:47 pilot_heartbeat.json
[2025-11-26 20:47:28] -rw-r--r--. 1 boincer umatlas      6949 Nov 26 20:47 init_data.xml
[2025-11-26 20:47:28] -rw-r--r--. 1 boincer umatlas      8192 Nov 26 20:47 boinc_mmap_file
[2025-11-26 20:47:28] -rw-r--r--. 1 boincer umatlas        29 Nov 26 20:47 wrapper_checkpoint.txt
[2025-11-26 20:47:28] -rw-------. 1 boincer umatlas      4825 Nov 26 20:47 pilotlog.txt
[2025-11-26 20:47:28] -rw-------. 1 boincer umatlas   9479487 Nov 26 20:47 log.47556161._002866.job.log.1
[2025-11-26 20:47:28] -rw-------. 1 boincer umatlas       353 Nov 26 20:47 output.list
[2025-11-26 20:47:28] -rw-r--r--. 1 boincer umatlas       620 Nov 26 20:47 runtime_log
[2025-11-26 20:47:28] -rw-------. 1 boincer umatlas  12257280 Nov 26 20:47 result.tar.gz
[2025-11-26 20:47:28] -rw-r--r--. 1 boincer umatlas      9345 Nov 26 20:47 runtime_log.err
[2025-11-26 20:47:28] -rw-------. 1 boincer umatlas       666 Nov 26 20:47 NvcKDmKbBi8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmVbMKDmjuBYVm.diag
[2025-11-26 20:47:28] -rw-r--r--. 1 boincer umatlas     21883 Nov 26 20:47 stderr.txt
[2025-11-26 20:47:28] HITS file was successfully produced:
[2025-11-26 20:47:28] -rw-------. 1 boincer umatlas 926961436 Nov 26 20:44 shared/HITS.pool.root.1
[2025-11-26 20:47:28]  *** Contents of shared directory: ***
[2025-11-26 20:47:28] total 1319744
[2025-11-26 20:47:28] -rw-r--r--. 2 boincer umatlas 411577615 Nov 26 00:00 ATLAS.root_0
[2025-11-26 20:47:28] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 00:00 start_atlas.sh
[2025-11-26 20:47:28] -rw-r--r--. 2 boincer umatlas    590108 Nov 26 00:00 input.tar.gz
[2025-11-26 20:47:28] -rw-------. 1 boincer umatlas 926961436 Nov 26 20:44 HITS.pool.root.1
[2025-11-26 20:47:28] -rw-------. 1 boincer umatlas  12257280 Nov 26 20:47 result.tar.gz
20:47:30 (1770181): run_atlas exited; CPU time 212994.616726
20:47:30 (1770181): called boinc_finish(0)

</stderr_txt>
]]>

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