Stderr output

<core_client_version>7.16.20</core_client_version>
<![CDATA[
<stderr_txt>
2025-11-26 06:13:11 (12900): vboxwrapper version 26210
2025-11-26 06:13:11 (12900): BOINC client version: 7.16.20
2025-11-26 06:13:12 (12900): Detected: VirtualBox VboxManage Interface (Version: 6.0.14)
2025-11-26 06:13:12 (12900): Successfully copied 'init_data.xml' to the shared directory.
2025-11-26 06:13:13 (12900): Create VM. (boinc_765c879afdf85dd1, slot#7)
2025-11-26 06:13:13 (12900): Setting Memory Size for VM. (4800MB)
2025-11-26 06:13:13 (12900): Setting CPU Count for VM. (8)
2025-11-26 06:13:14 (12900): Setting Chipset Options for VM.
2025-11-26 06:13:14 (12900): Setting Graphics Controller Options for VM. (Driver: VBoxVGA, 16MB)
2025-11-26 06:13:14 (12900): Setting Boot Options for VM.
2025-11-26 06:13:15 (12900): Setting Network Configuration for NAT. (Driver: virtio)
2025-11-26 06:13:16 (12900): Enabling VM Network Access.
2025-11-26 06:13:16 (12900): Disabling USB Support for VM.
2025-11-26 06:13:16 (12900): Disabling COM Port Support for VM.
2025-11-26 06:13:17 (12900): Disabling LPT Port Support for VM.
2025-11-26 06:13:17 (12900): Disabling Audio Support for VM.
2025-11-26 06:13:18 (12900): Disabling Clipboard Support for VM.
2025-11-26 06:13:18 (12900): Disabling Drag and Drop Support for VM.
2025-11-26 06:13:18 (12900): Adding storage controller(s) to VM.
2025-11-26 06:13:18 (12900): Adding virtual disk drive to VM. (ATLAS_vbox_3.03_image.vdi)
2025-11-26 06:13:20 (12900): Adding VirtualBox Guest Additions to VM.
2025-11-26 06:13:20 (12900): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-11-26 06:13:20 (12900): forwarding host port 63035 to guest port 80
2025-11-26 06:13:20 (12900): Enabling remote desktop for VM.
2025-11-26 06:13:21 (12900): Required extension pack not installed, remote desktop not enabled.
2025-11-26 06:13:21 (12900): Enabling shared directory for VM.
2025-11-26 06:13:21 (12900): Starting VM using VBoxManage interface. (boinc_765c879afdf85dd1, slot#7)
2025-11-26 06:13:25 (12900): Successfully started VM. (PID = '11144')
2025-11-26 06:13:25 (12900): Reporting VM Process ID to BOINC.
2025-11-26 06:13:25 (12900): Guest Log: BIOS: VirtualBox 6.0.14
2025-11-26 06:13:25 (12900): Guest Log: CPUID EDX: 0x178bfbff
2025-11-26 06:13:25 (12900): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-11-26 06:13:25 (12900): VM state change detected. (old = 'poweredoff', new = 'running')
2025-11-26 06:13:25 (12900): Detected: Web Application Enabled (http://localhost:63035)
2025-11-26 06:13:25 (12900): Preference change detected
2025-11-26 06:13:25 (12900): Setting CPU throttle for VM. (100%)
2025-11-26 06:13:25 (12900): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-11-26 06:13:27 (12900): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-11-26 06:13:27 (12900): Guest Log: BIOS: Booting from Hard Disk...
2025-11-26 06:13:31 (12900): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-11-26 06:13:31 (12900): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-11-26 06:13:31 (12900): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-11-26 06:13:31 (12900): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-11-26 06:13:31 (12900): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-11-26 06:13:31 (12900): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-11-26 06:13:31 (12900): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-11-26 06:13:31 (12900): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-11-26 06:13:31 (12900): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-11-26 06:13:31 (12900): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-11-26 06:13:31 (12900): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-11-26 06:13:31 (12900): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-11-26 06:13:31 (12900): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-11-26 06:13:31 (12900): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-11-26 06:13:31 (12900): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-11-26 06:13:31 (12900): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-11-26 06:13:31 (12900): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-11-26 06:13:31 (12900): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-11-26 06:13:31 (12900): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-11-26 06:13:31 (12900): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-11-26 06:13:31 (12900): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-11-26 06:13:31 (12900): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-11-26 06:13:31 (12900): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-11-26 06:13:31 (12900): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-11-26 06:13:31 (12900): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-11-26 06:13:31 (12900): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-11-26 06:13:31 (12900): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-11-26 06:13:31 (12900): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-11-26 06:13:31 (12900): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-11-26 06:13:31 (12900): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-11-26 06:13:31 (12900): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-11-26 06:13:31 (12900): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-11-26 06:13:41 (12900): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-11-26 06:13:41 (12900): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0000000 (size 0x400000)
2025-11-26 06:13:51 (12900): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-11-26 06:13:51 (12900): Guest Log: 00:00:00.000211 main     Log opened 2025-11-26T06:13:49.343580000Z
2025-11-26 06:13:51 (12900): Guest Log: 00:00:00.000312 main     OS Product: Linux
2025-11-26 06:13:51 (12900): Guest Log: 00:00:00.000355 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-11-26 06:13:51 (12900): Guest Log: 00:00:00.000393 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-11-26 06:13:51 (12900): Guest Log: 00:00:00.000431 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-11-26 06:13:51 (12900): Guest Log: 00:00:00.000432 main     Process ID: 1370
2025-11-26 06:13:51 (12900): Guest Log: 00:00:00.000433 main     Package type: LINUX_64BITS_GENERIC
2025-11-26 06:13:51 (12900): Guest Log: 00:00:00.001465 main     5.2.32 r132073 started. Verbose level = 0
2025-11-26 06:13:51 (12900): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-11-26 06:13:51 (12900): Guest Log: [INFO] Mounting shared directory
2025-11-26 06:13:51 (12900): Guest Log: [INFO] Checking for init_data.xml
2025-11-26 06:13:58 (12900): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-11-26 06:13:58 (12900): Guest Log: [INFO] Detected branch: prod
2025-11-26 06:13:59 (12900): Guest Log: This is the prod version of the ATLAS job wrapper
2025-11-26 06:13:59 (12900): Guest Log: Copying input files
2025-11-26 06:14:01 (12900): Guest Log: 00:00:10.003268 timesync vgsvcTimeSyncWorker: Radical guest time change: -3 588 305 089 000ns (GuestNow=1 764 134 041 041 257 000 ns GuestLast=1 764 137 629 346 346 000 ns fSetTimeLastLoop=true )
2025-11-26 06:14:02 (12900): Guest Log: Copied input files into RunAtlas.
2025-11-26 06:14:02 (12900): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-11-26 06:14:02 (12900): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-11-26 06:14:02 (12900): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-11-26 06:14:02 (12900): Guest Log: Further information can be found at the LHC@home message board.
2025-11-26 06:14:12 (12900): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-11-26 06:14:12 (12900): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-11-26 06:14:12 (12900): Guest Log: 2.6.3.0 1649 0 30148 153311 4 1 3117639 4096000 0 65024 0 0 n/a 0 0 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2025-11-26 06:14:13 (12900): Guest Log: copied the webapp to /var/www
2025-11-26 06:14:13 (12900): Guest Log: ATHENA_PROC_NUMBER=8
2025-11-26 06:14:13 (12900): Guest Log: ATHENA_CORE_NUMBER=8
2025-11-26 06:14:13 (12900): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-11-26 06:14:14 (12900): Guest Log:  *** Starting ATLAS job. (PandaID=6897531574 taskID=47556161) ***
2025-11-26 07:53:44 (12900): Status Report: Elapsed Time: '6000.000000'
2025-11-26 07:53:44 (12900): Status Report: CPU Time: '39227.953125'
2025-11-26 09:34:06 (12900): Status Report: Elapsed Time: '12000.399786'
2025-11-26 09:34:06 (12900): Status Report: CPU Time: '84039.890625'
2025-11-26 11:14:26 (12900): Status Report: Elapsed Time: '18000.401054'
2025-11-26 11:14:26 (12900): Status Report: CPU Time: '128837.640625'
2025-11-26 12:54:47 (12900): Status Report: Elapsed Time: '24000.401054'
2025-11-26 12:54:47 (12900): Status Report: CPU Time: '173442.140625'
2025-11-26 14:35:08 (12900): Status Report: Elapsed Time: '30000.729357'
2025-11-26 14:35:08 (12900): Status Report: CPU Time: '218248.546875'
2025-11-26 16:15:30 (12900): Status Report: Elapsed Time: '36000.914312'
2025-11-26 16:15:30 (12900): Status Report: CPU Time: '262752.843750'
2025-11-26 17:55:47 (12900): Status Report: Elapsed Time: '42001.554907'
2025-11-26 17:55:47 (12900): Status Report: CPU Time: '307488.203125'
2025-11-26 19:36:09 (12900): Status Report: Elapsed Time: '48002.177170'
2025-11-26 19:36:09 (12900): Status Report: CPU Time: '351970.250000'
2025-11-26 21:16:40 (12900): Status Report: Elapsed Time: '54002.217985'
2025-11-26 21:16:40 (12900): Status Report: CPU Time: '396803.078125'
2025-11-26 22:57:01 (12900): Status Report: Elapsed Time: '60002.782007'
2025-11-26 22:57:01 (12900): Status Report: CPU Time: '441379.359375'
2025-11-27 00:37:18 (12900): Status Report: Elapsed Time: '66003.076853'
2025-11-27 00:37:18 (12900): Status Report: CPU Time: '486195.359375'
2025-11-27 02:17:37 (12900): Status Report: Elapsed Time: '72003.184336'
2025-11-27 02:17:37 (12900): Status Report: CPU Time: '530939.296875'
2025-11-27 03:57:57 (12900): Status Report: Elapsed Time: '78003.373911'
2025-11-27 03:57:57 (12900): Status Report: CPU Time: '575517.921875'
2025-11-27 05:23:34 (12900): Guest Log:  *** Job finished ***
2025-11-27 05:23:34 (12900): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-11-27 05:23:34 (12900): Guest Log: 2025-11-27 04:23:25,873 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
2025-11-27 05:23:34 (12900): Guest Log: 2025-11-27 04:23:25,873 | WARNING  | will wait for a maximum of 300 s for threads to finish
2025-11-27 05:23:34 (12900): Guest Log: 2025-11-27 04:23:27,251 | INFO     | [monitor] cgroup control has ended
2025-11-27 05:23:34 (12900): Guest Log: 2025-11-27 04:23:28,409 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139849019430720)>', '<ExcThread(monitor, started 139848270726912)>']
2025-11-27 05:23:34 (12900): Guest Log: 2025-11-27 04:23:28,890 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-11-27 05:23:34 (12900): Guest Log: 2025-11-27 04:23:28,890 | INFO     | [monitor] control thread has ended
2025-11-27 05:23:34 (12900): Guest Log: 2025-11-27 04:23:33,415 | INFO     | all workflow threads have been joined
2025-11-27 05:23:34 (12900): Guest Log: 2025-11-27 04:23:33,415 | INFO     | end of generic workflow (traces error code: 0)
2025-11-27 05:23:34 (12900): Guest Log: 2025-11-27 04:23:33,415 | INFO     | traces error code: 0
2025-11-27 05:23:34 (12900): Guest Log: 2025-11-27 04:23:33,415 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-11-27 05:23:34 (12900): Guest Log: 2025-11-27 04:23:33,574 [wrapper] ==== pilot stdout END ====
2025-11-27 05:23:34 (12900): Guest Log: 2025-11-27 04:23:33,582 [wrapper] ==== wrapper stdout RESUME ====
2025-11-27 05:23:34 (12900): Guest Log: 2025-11-27 04:23:33,590 [wrapper] pilotpid: 6102
2025-11-27 05:23:34 (12900): Guest Log: 2025-11-27 04:23:33,598 [wrapper] Pilot exit status: 0
2025-11-27 05:23:34 (12900): Guest Log: 2025-11-27 04:23:33,624 [wrapper] pandaids: 6897531574
2025-11-27 05:23:34 (12900): Guest Log: 2025-11-27 04:23:33,677 [wrapper] cleanup supervisor_pilot 21673 6103
2025-11-27 05:23:34 (12900): Guest Log: 2025-11-27 04:23:33,689 [wrapper] Test setup, not cleaning
2025-11-27 05:23:34 (12900): Guest Log: 2025-11-27 04:23:33,697 [wrapper] apfmon messages muted
2025-11-27 05:23:34 (12900): Guest Log: 2025-11-27 04:23:33,704 [wrapper] ==== wrapper stdout END ====
2025-11-27 05:23:34 (12900): Guest Log: 2025-11-27 04:23:33,712 [wrapper] ==== wrapper stderr END ====
2025-11-27 05:23:34 (12900): Guest Log:  *** Error codes and diagnostics ***
2025-11-27 05:23:34 (12900): Guest Log:     "exeErrorCode": 0,
2025-11-27 05:23:34 (12900): Guest Log:     "exeErrorDiag": "",
2025-11-27 05:23:34 (12900): Guest Log:     "pilotErrorCode": 0,
2025-11-27 05:23:34 (12900): Guest Log:     "pilotErrorDiag": "",
2025-11-27 05:23:34 (12900): Guest Log:  *** Listing of results directory ***
2025-11-27 05:23:34 (12900): Guest Log: total 930696
2025-11-27 05:23:34 (12900): Guest Log: -rw-r--r--. 1 atlas atlas    576529 Nov 25 16:48 pilot3.tar.gz
2025-11-27 05:23:34 (12900): Guest Log: -rwx------. 1 atlas atlas     36292 Nov 25 17:01 runpilot2-wrapper.sh
2025-11-27 05:23:34 (12900): Guest Log: -rw-r--r--. 1 atlas atlas      5112 Nov 25 17:02 queuedata.json
2025-11-27 05:23:34 (12900): Guest Log: -rwxr-xr-x. 1 atlas atlas      8774 Nov 26 05:14 init_data.xml
2025-11-27 05:23:34 (12900): Guest Log: -rwxr-xr-x. 1 atlas atlas    590107 Nov 26 05:14 input.tar.gz
2025-11-27 05:23:34 (12900): Guest Log: -rwxr-xr-x. 1 atlas atlas     15847 Nov 26 05:14 start_atlas.sh
2025-11-27 05:23:34 (12900): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Nov 26 05:14 EVNT.47483658._002302.pool.root.1 -> /data/./ATLAS.root_0
2025-11-27 05:23:34 (12900): Guest Log: -rw-r--r--. 1 atlas atlas      2786 Nov 26 05:14 pandaJob.out
2025-11-27 05:23:34 (12900): Guest Log: -rw-------. 1 atlas atlas    991877 Nov 26 05:15 agis_schedconf.cvmfs.json
2025-11-27 05:23:34 (12900): Guest Log: drwx------. 5 atlas atlas      4096 Nov 26 05:16 pilot3
2025-11-27 05:23:34 (12900): Guest Log: -rw-------. 1 atlas atlas 923191803 Nov 27 04:21 HITS.47556161._002859.pool.root.1
2025-11-27 05:23:34 (12900): Guest Log: -rw-------. 1 atlas atlas      1044 Nov 27 04:22 memory_monitor_summary.json
2025-11-27 05:23:34 (12900): Guest Log: -rw-------. 1 atlas atlas   1516240 Nov 27 04:22 agis_ddmendpoints.agis.ALL.json
2025-11-27 05:23:34 (12900): Guest Log: -rw-------. 1 atlas atlas   2446002 Nov 27 04:22 log.47556161._002859.job.log.tgz.1
2025-11-27 05:23:34 (12900): Guest Log: -rw-------. 1 atlas atlas      8683 Nov 27 04:22 heartbeat.json
2025-11-27 05:23:34 (12900): Guest Log: -rw-------. 1 atlas atlas        95 Nov 27 04:23 pilot_heartbeat.json
2025-11-27 05:23:34 (12900): Guest Log: -rw-------. 1 atlas atlas      4921 Nov 27 04:23 pilotlog.txt
2025-11-27 05:23:34 (12900): Guest Log: -rw-------. 1 atlas atlas  10549849 Nov 27 04:23 log.47556161._002859.job.log.1
2025-11-27 05:23:34 (12900): Guest Log: -rw-------. 1 atlas atlas       353 Nov 27 04:23 output.list
2025-11-27 05:23:34 (12900): Guest Log: -rw-r--r--. 1 atlas atlas       620 Nov 27 04:23 runtime_log
2025-11-27 05:23:34 (12900): Guest Log: -rw-------. 1 atlas atlas  13015040 Nov 27 04:23 result.tar.gz
2025-11-27 05:23:34 (12900): Guest Log: -rw-r--r--. 1 atlas atlas      8756 Nov 27 04:23 runtime_log.err
2025-11-27 05:23:34 (12900): Guest Log: -rw-------. 1 atlas atlas       667 Nov 27 04:23 cAWKDmKbBi8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmQbMKDmLKi9wn.diag
2025-11-27 05:23:34 (12900): Guest Log: Looking for outputfile HITS.47556161._002859.pool.root.1
2025-11-27 05:23:34 (12900): Guest Log: HITS file was successfully produced
2025-11-27 05:23:34 (12900): Guest Log: -rw-------. 1 atlas atlas 923191803 Nov 27 04:21 /home/atlas/RunAtlas/HITS.47556161._002859.pool.root.1
2025-11-27 05:23:40 (12900): Guest Log: Successfully finished the ATLAS job!
2025-11-27 05:23:40 (12900): Guest Log: Copying the results back to the shared directory!
2025-11-27 05:23:40 (12900): Guest Log:  *** Contents of shared directory: ***
2025-11-27 05:23:40 (12900): Guest Log: total 1313092
2025-11-27 05:23:40 (12900): Guest Log: -rwxrwxrwx. 1 root root 407771576 Nov 26 05:13 ATLAS.root_0
2025-11-27 05:23:40 (12900): Guest Log: -rwxrwxrwx. 1 root root 923191803 Nov 27 04:23 HITS.pool.root.1
2025-11-27 05:23:40 (12900): Guest Log: -rwxrwxrwx. 1 root root      8774 Nov 26 05:13 init_data.xml
2025-11-27 05:23:40 (12900): Guest Log: -rwxrwxrwx. 1 root root    590107 Nov 26 03:55 input.tar.gz
2025-11-27 05:23:40 (12900): Guest Log: -rwxrwxrwx. 1 root root  13015040 Nov 27 04:23 result.tar.gz
2025-11-27 05:23:40 (12900): Guest Log: -rwxrwxrwx. 1 root root     15847 Nov 26 03:55 start_atlas.sh
2025-11-27 05:23:40 (12900): Guest Log:  *** Success! Shutting down the machine. ***
2025-11-27 05:23:41 (12900): VM Completion File Detected.
2025-11-27 05:23:41 (12900): Powering off VM.
2025-11-27 05:23:42 (12900): Successfully stopped VM.
2025-11-27 05:23:42 (12900): Deregistering VM. (boinc_765c879afdf85dd1, slot#7)
2025-11-27 05:23:42 (12900): Removing network bandwidth throttle group from VM.
2025-11-27 05:23:43 (12900): Removing VM from VirtualBox.
2025-11-27 05:23:48 (12900): called boinc_finish(0)

</stderr_txt>
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