Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:03:36 (3049983): wrapper (7.7.26015): starting
00:03:36 (3049983): wrapper: running run_atlas (--nthreads 9)
[2025-11-26 00:03:36] Arguments: --nthreads 9
[2025-11-26 00:03:36] Threads: 9
[2025-11-26 00:03:36] Checking for CVMFS
[2025-11-26 00:03:37] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 00:03:38] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 00:03:38] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 00:03:39] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 00:03:39] 2.13.2.0 12053 35389 281836 153309 2 713 38105088 40960001 13490 16776704 0 37234000 99.732 24112249 38476 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-26 00:03:39] CVMFS is ok
[2025-11-26 00:03:39] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 00:03:39] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 00:03:39] Further information can be found at the LHC@home message board.
[2025-11-26 00:03:39] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 00:03:39] Checking for apptainer binary...
[2025-11-26 00:03:39] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 00:03:39] Running /usr/bin/apptainer --version
[2025-11-26 00:03:39] apptainer version 1.4.4-1.el9
[2025-11-26 00:03:39] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 00:03:41] c-210-31-4.aglt2.org
[2025-11-26 00:03:41] apptainer works
[2025-11-26 00:03:41] Set ATHENA_PROC_NUMBER=9
[2025-11-26 00:03:41] Set ATHENA_CORE_NUMBER=9
[2025-11-26 00:03:41] Starting ATLAS job with PandaID=6897508081
[2025-11-26 00:03:41] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 20:33:13]  *** The last 200 lines of the pilot log: ***
[2025-11-26 20:33:13] 2025-11-27 01:31:57,523 | INFO     | .. there are 11 such processes running
[2025-11-26 20:33:13] 2025-11-27 01:31:58,524 | INFO     | time since job start (73622s) is within the limit (172800.0s)
[2025-11-26 20:33:13] 2025-11-27 01:31:59,518 | INFO     | monitor loop #4729: job 0:6897508081 is in state 'finished'
[2025-11-26 20:33:13] 2025-11-27 01:31:59,518 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 20:33:13] 2025-11-27 01:32:00,536 | INFO     | time since job start (73624s) is within the limit (172800.0s)
[2025-11-26 20:33:13] 2025-11-27 01:32:02,023 | INFO     | monitor loop #4730: job 0:6897508081 is in state 'finished'
[2025-11-26 20:33:13] 2025-11-27 01:32:02,027 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 20:33:13] 2025-11-27 01:32:02,543 | INFO     | time since job start (73626s) is within the limit (172800.0s)
[2025-11-26 20:33:13] 2025-11-27 01:32:04,541 | INFO     | monitor loop #4731: job 0:6897508081 is in state 'finished'
[2025-11-26 20:33:13] 2025-11-27 01:32:04,541 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 20:33:13] 2025-11-27 01:32:04,550 | INFO     | time since job start (73628s) is within the limit (172800.0s)
[2025-11-26 20:33:13] 2025-11-27 01:32:06,557 | INFO     | time since job start (73630s) is within the limit (172800.0s)
[2025-11-26 20:33:13] 2025-11-27 01:32:07,046 | INFO     | monitor loop #4732: job 0:6897508081 is in state 'finished'
[2025-11-26 20:33:13] 2025-11-27 01:32:07,051 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 20:33:13] 2025-11-27 01:32:08,139 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-26 20:33:13] 2025-11-27 01:32:08,143 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 2728.741107142858
[2025-11-26 20:33:13] 2025-11-27 01:32:08,227 | INFO     | using path: /tmp/boinchome/slots/5/PanDA_Pilot-6897508081/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 20:33:13] 2025-11-27 01:32:08,228 | INFO     | extracted standard info from prmon json
[2025-11-26 20:33:13] 2025-11-27 01:32:08,228 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 20:33:13] 2025-11-27 01:32:08,228 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 20:33:13] 2025-11-27 01:32:08,249 | INFO     | fitting pss+swap vs Time
[2025-11-26 20:33:13] 2025-11-27 01:32:08,251 | INFO     | sum of square deviations: 541187143044.94696
[2025-11-26 20:33:13] 2025-11-27 01:32:08,276 | INFO     | sum of deviations: 4702234933961.418
[2025-11-26 20:33:13] 2025-11-27 01:32:08,277 | INFO     | mean x: 1764170343.5066445
[2025-11-26 20:33:13] 2025-11-27 01:32:08,277 | INFO     | mean y: 3015917.384551495
[2025-11-26 20:33:13] 2025-11-27 01:32:08,277 | INFO     | intersect: -15325403327.79824
[2025-11-26 20:33:13] 2025-11-27 01:32:08,278 | INFO     | chi2: 20.03938969720188
[2025-11-26 20:33:13] 2025-11-27 01:32:08,280 | INFO     | sum of square deviations: 534473316799.72986
[2025-11-26 20:33:13] 2025-11-27 01:32:08,305 | INFO     | sum of deviations: 5120457966759.5205
[2025-11-26 20:33:13] 2025-11-27 01:32:08,306 | INFO     | mean x: 1764170191.0150125
[2025-11-26 20:33:13] 2025-11-27 01:32:08,306 | INFO     | mean y: 3025414.9716430358
[2025-11-26 20:33:13] 2025-11-27 01:32:08,306 | INFO     | intersect: -16898397023.461025
[2025-11-26 20:33:13] 2025-11-27 01:32:08,307 | INFO     | chi2: 16.887687707134297
[2025-11-26 20:33:13] 2025-11-27 01:32:08,307 | INFO     | current chi2=16.887687707134297 (change=15.727534808645686 %)
[2025-11-26 20:33:13] 2025-11-27 01:32:08,307 | INFO     | right removable region: 1198
[2025-11-26 20:33:13] 2025-11-27 01:32:08,309 | INFO     | sum of square deviations: 534471843039.72943
[2025-11-26 20:33:13] 2025-11-27 01:32:08,334 | INFO     | sum of deviations: 4186504465627.5176
[2025-11-26 20:33:13] 2025-11-27 01:32:08,335 | INFO     | mean x: 1764170496.0150125
[2025-11-26 20:33:13] 2025-11-27 01:32:08,335 | INFO     | mean y: 3027628.2493744786
[2025-11-26 20:33:13] 2025-11-27 01:32:08,335 | INFO     | intersect: -13815675369.629887
[2025-11-26 20:33:13] 2025-11-27 01:32:08,336 | INFO     | chi2: 15.64801615741665
[2025-11-26 20:33:13] 2025-11-27 01:32:08,337 | INFO     | current chi2=15.64801615741665 (change=21.913708980859838 %)
[2025-11-26 20:33:13] 2025-11-27 01:32:08,337 | INFO     | left removable region: 10
[2025-11-26 20:33:13] 2025-11-27 01:32:08,338 | INFO     | sum of square deviations: 519895929167.65344
[2025-11-26 20:33:13] 2025-11-27 01:32:08,363 | INFO     | sum of deviations: 4253673394845.485
[2025-11-26 20:33:13] 2025-11-27 01:32:08,363 | INFO     | mean x: 1764170465.53367
[2025-11-26 20:33:13] 2025-11-27 01:32:08,363 | INFO     | mean y: 3049724.8005050505
[2025-11-26 20:33:13] 2025-11-27 01:32:08,363 | INFO     | intersect: -14431002461.810919
[2025-11-26 20:33:13] 2025-11-27 01:32:08,364 | INFO     | chi2: 8.501755936414686
[2025-11-26 20:33:13] 2025-11-27 01:32:08,365 | INFO     | current memory leak: 8.18 B/s (using 1188 data points, chi2=8.50)
[2025-11-26 20:33:13] 2025-11-27 01:32:08,366 | INFO     | could have reported an average CPU frequency of 2804 MHz (44 samples)
[2025-11-26 20:33:13] 2025-11-27 01:32:08,366 | INFO     | ..............................
[2025-11-26 20:33:13] 2025-11-27 01:32:08,367 | INFO     | . Timing measurements:
[2025-11-26 20:33:13] 2025-11-27 01:32:08,367 | INFO     | . get job = 0 s
[2025-11-26 20:33:13] 2025-11-27 01:32:08,367 | INFO     | . initial setup = 5 s
[2025-11-26 20:33:13] 2025-11-27 01:32:08,367 | INFO     | . payload setup = 44 s
[2025-11-26 20:33:13] 2025-11-27 01:32:08,367 | INFO     | . stage-in = 0 s
[2025-11-26 20:33:13] 2025-11-27 01:32:08,367 | INFO     | . payload execution = 73460 s
[2025-11-26 20:33:13] 2025-11-27 01:32:08,367 | INFO     | . stage-out = 8 s
[2025-11-26 20:33:13] 2025-11-27 01:32:08,367 | INFO     | . log creation = 2 s
[2025-11-26 20:33:13] 2025-11-27 01:32:08,367 | INFO     | ..............................
[2025-11-26 20:33:13] 2025-11-27 01:32:08,564 | INFO     | time since job start (73632s) is within the limit (172800.0s)
[2025-11-26 20:33:13] 2025-11-27 01:32:08,901 | INFO     | 
[2025-11-26 20:33:13] 2025-11-27 01:32:08,901 | INFO     | job summary report
[2025-11-26 20:33:13] 2025-11-27 01:32:08,901 | INFO     | --------------------------------------------------
[2025-11-26 20:33:13] 2025-11-27 01:32:08,901 | INFO     | PanDA job id: 6897508081
[2025-11-26 20:33:13] 2025-11-27 01:32:08,901 | INFO     | task id: 47556161
[2025-11-26 20:33:13] 2025-11-27 01:32:08,901 | INFO     | errors: (none)
[2025-11-26 20:33:13] 2025-11-27 01:32:08,901 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 20:33:13] 2025-11-27 01:32:08,901 | INFO     | pilot state: finished 
[2025-11-26 20:33:13] 2025-11-27 01:32:08,901 | INFO     | transexitcode: 0
[2025-11-26 20:33:13] 2025-11-27 01:32:08,901 | INFO     | exeerrorcode: 0
[2025-11-26 20:33:13] 2025-11-27 01:32:08,901 | INFO     | exeerrordiag: 
[2025-11-26 20:33:13] 2025-11-27 01:32:08,902 | INFO     | exitcode: 0
[2025-11-26 20:33:13] 2025-11-27 01:32:08,902 | INFO     | exitmsg: OK
[2025-11-26 20:33:13] 2025-11-27 01:32:08,902 | INFO     | cpuconsumptiontime: 254682 s
[2025-11-26 20:33:13] 2025-11-27 01:32:08,902 | INFO     | nevents: 1000
[2025-11-26 20:33:13] 2025-11-27 01:32:08,902 | INFO     | neventsw: 0
[2025-11-26 20:33:13] 2025-11-27 01:32:08,902 | INFO     | pid: 3067076
[2025-11-26 20:33:13] 2025-11-27 01:32:08,902 | INFO     | pgrp: 3067076
[2025-11-26 20:33:13] 2025-11-27 01:32:08,902 | INFO     | corecount: 9
[2025-11-26 20:33:13] 2025-11-27 01:32:08,902 | INFO     | event service: False
[2025-11-26 20:33:13] 2025-11-27 01:32:08,902 | INFO     | sizes: {0: 2283437, 1: 2284122, 2: 2284122, 3: 2284349, 4: 2284349, 15: 2284377, 26: 2284533, 37: 2284561, 38: 2284851, 48: 2284879, 73510: 2345274, 73520: 2354268
[2025-11-26 20:33:13] 2025-11-27 01:32:08,902 | INFO     | --------------------------------------------------
[2025-11-26 20:33:13] 2025-11-27 01:32:08,903 | INFO     | 
[2025-11-26 20:33:13] 2025-11-27 01:32:08,903 | INFO     | executing command: ls -lF /tmp/boinchome/slots/5
[2025-11-26 20:33:13] 2025-11-27 01:32:09,009 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 20:33:13] 2025-11-27 01:32:09,009 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 20:33:13] 2025-11-27 01:32:09,009 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 20:33:13] 2025-11-27 01:32:09,009 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 20:33:13] 2025-11-27 01:32:09,009 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 20:33:13] 2025-11-27 01:32:09,009 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 20:33:13] 2025-11-27 01:32:09,009 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 20:33:13] 2025-11-27 01:32:09,010 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 20:33:13] 2025-11-27 01:32:09,010 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 20:33:13] 2025-11-27 01:32:09,010 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 20:33:13] 2025-11-27 01:32:09,010 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 20:33:13] 2025-11-27 01:32:09,010 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 20:33:13] 2025-11-27 01:32:09,010 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 20:33:13] 2025-11-27 01:32:09,010 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 20:33:13] 2025-11-27 01:32:09,010 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 20:33:13] 2025-11-27 01:32:09,010 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 20:33:13] 2025-11-27 01:32:09,010 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 20:33:13] 2025-11-27 01:32:09,010 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 20:33:13] 2025-11-27 01:32:09,010 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 20:33:13] 2025-11-27 01:32:09,010 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 20:33:13] 2025-11-27 01:32:09,011 | INFO     | job 6897508081 has completed (purged errors)
[2025-11-26 20:33:13] 2025-11-27 01:32:09,011 | INFO     | overall cleanup function is called
[2025-11-26 20:33:13] 2025-11-27 01:32:10,041 | INFO     | --- collectZombieJob: --- 10, [3067076]
[2025-11-26 20:33:13] 2025-11-27 01:32:10,042 | INFO     | zombie collector waiting for pid 3067076
[2025-11-26 20:33:13] 2025-11-27 01:32:10,042 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 20:33:13] 2025-11-27 01:32:10,042 | INFO     | collected zombie processes
[2025-11-26 20:33:13] 2025-11-27 01:32:10,042 | INFO     | will attempt to kill all subprocesses of pid=3067076
[2025-11-26 20:33:13] 2025-11-27 01:32:10,792 | INFO     | process IDs to be killed: [3067076] (in reverse order)
[2025-11-26 20:33:13] 2025-11-27 01:32:10,966 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 20:33:13] 2025-11-27 01:32:10,966 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 20:33:13] 2025-11-27 01:32:11,006 | INFO     | did not find any defunct processes belonging to 3067076
[2025-11-26 20:33:13] 2025-11-27 01:32:11,111 | INFO     | did not find any defunct processes belonging to 3067076
[2025-11-26 20:33:13] 2025-11-27 01:32:11,163 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 20:33:13] 2025-11-27 01:32:11,164 | INFO     | ready for new job
[2025-11-26 20:33:13] 2025-11-27 01:32:11,164 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 20:33:13] 2025-11-27 01:32:11,174 | INFO     | ***************************************
[2025-11-26 20:33:13] 2025-11-27 01:32:11,175 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 20:33:13] 2025-11-27 01:32:11,175 | INFO     | ***************************************
[2025-11-26 20:33:13] 2025-11-27 01:32:11,175 | INFO     | 
[2025-11-26 20:33:13] 2025-11-27 01:32:11,179 | INFO     | architecture information:
[2025-11-26 20:33:13] 2025-11-27 01:32:11,214 | INFO     | executing command: cat /etc/os-release
[2025-11-26 20:33:13] 2025-11-27 01:32:11,346 | INFO     | cat /etc/os-release:
[2025-11-26 20:33:13] NAME="CentOS Linux"
[2025-11-26 20:33:13] VERSION="7 (Core)"
[2025-11-26 20:33:13] ID="centos"
[2025-11-26 20:33:13] ID_LIKE="rhel fedora"
[2025-11-26 20:33:13] VERSION_ID="7"
[2025-11-26 20:33:13] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 20:33:13] ANSI_COLOR="0;31"
[2025-11-26 20:33:13] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 20:33:13] HOME_URL="https://www.centos.org/"
[2025-11-26 20:33:13] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 20:33:13] 
[2025-11-26 20:33:13] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 20:33:13] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 20:33:13] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 20:33:13] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 20:33:13] 
[2025-11-26 20:33:13] 2025-11-27 01:32:11,346 | INFO     | ***************************************
[2025-11-26 20:33:13] 2025-11-27 01:32:11,850 | INFO     | executing command: df -mP /tmp/boinchome/slots/5
[2025-11-26 20:33:13] 2025-11-27 01:32:11,934 | INFO     | sufficient remaining disk space (70228377600 B)
[2025-11-26 20:33:13] 2025-11-27 01:32:11,934 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 20:33:13] 2025-11-27 01:32:11,935 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 20:33:13] 2025-11-27 01:32:11,935 | INFO     | update_server=False
[2025-11-26 20:33:13] 2025-11-27 01:32:11,935 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 20:33:13] 2025-11-27 01:32:11,935 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 20:33:13] 2025-11-27 01:32:12,117 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-26 20:33:13] 2025-11-27 01:32:12,118 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-26 20:33:13] 2025-11-27 01:32:12,118 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 20:33:13] 2025-11-27 01:32:12,118 | INFO     | will abort loop
[2025-11-26 20:33:13] 2025-11-27 01:32:12,525 | INFO     | all payload control threads have been joined
[2025-11-26 20:33:13] 2025-11-27 01:32:12,652 | INFO     | all data control threads have been joined
[2025-11-26 20:33:13] 2025-11-27 01:32:12,941 | INFO     | [job] retrieve thread has finished
[2025-11-26 20:33:13] 2025-11-27 01:32:13,056 | INFO     | all job control threads have been joined
[2025-11-26 20:33:13] 2025-11-27 01:32:13,124 | INFO     | [job] job monitor thread has finished
[2025-11-26 20:33:13] 2025-11-27 01:32:13,187 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 20:33:13] 2025-11-27 01:32:13,192 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 20:33:13] 2025-11-27 01:32:13,519 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 20:33:13] 2025-11-27 01:32:13,532 | INFO     | [payload] control thread has finished
[2025-11-26 20:33:13] 2025-11-27 01:32:13,607 | INFO     | [payload] failed_post thread has finished
[2025-11-26 20:33:13] 2025-11-27 01:32:13,617 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 20:33:13] 2025-11-27 01:32:13,627 | INFO     | [payload] validate_post thread has finished
[2025-11-26 20:33:13] 2025-11-27 01:32:13,659 | INFO     | [data] control thread has finished
[2025-11-26 20:33:13] 2025-11-27 01:32:13,920 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 20:33:13] 2025-11-27 01:32:13,939 | INFO     | [job] validate thread has finished
[2025-11-26 20:33:13] 2025-11-27 01:32:13,942 | INFO     | [data] copytool_out thread has finished
[2025-11-26 20:33:13] 2025-11-27 01:32:14,022 | INFO     | [data] copytool_in thread has finished
[2025-11-26 20:33:13] 2025-11-27 01:32:14,059 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 20:33:13] 2025-11-27 01:32:14,065 | INFO     | [job] control thread has finished
[2025-11-26 20:33:13] 2025-11-27 01:32:14,525 | INFO     | [job] queue monitor thread has finished
[2025-11-26 20:33:13] 2025-11-27 01:32:17,627 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 20:33:13] 2025-11-27 01:32:42,384 | INFO     | PID=3057324 has CPU usage=2.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-26 20:33:13] 2025-11-27 01:32:42,384 | INFO     | .. there are 11 such processes running
[2025-11-26 20:33:13] 2025-11-27 01:32:42,385 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 20:33:13] 2025-11-27 01:32:42,385 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 20:33:13] 2025-11-27 01:32:42,385 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 20:33:13] 2025-11-27 01:33:04,183 | INFO     | [monitor] cgroup control has ended
[2025-11-26 20:33:13] 2025-11-27 01:33:06,209 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140178006841152)>', '<ExcThread(monitor, started 140176928012032)>']
[2025-11-26 20:33:13] 2025-11-27 01:33:06,546 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 20:33:13] 2025-11-27 01:33:06,547 | INFO     | [monitor] control thread has ended
[2025-11-26 20:33:13] 2025-11-27 01:33:11,235 | INFO     | all workflow threads have been joined
[2025-11-26 20:33:13] 2025-11-27 01:33:11,235 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 20:33:13] 2025-11-27 01:33:11,235 | INFO     | traces error code: 0
[2025-11-26 20:33:13] 2025-11-27 01:33:11,236 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 20:33:13] 2025-11-27 01:33:12,117 [wrapper] ==== pilot stdout END ====
[2025-11-26 20:33:13] 2025-11-27 01:33:12,144 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 20:33:13] 2025-11-27 01:33:12,187 [wrapper] pilotpid: 3057324
[2025-11-26 20:33:13] 2025-11-27 01:33:12,231 [wrapper] Pilot exit status: 0
[2025-11-26 20:33:13] 2025-11-27 01:33:12,366 [wrapper] pandaids: 6897508081
[2025-11-26 20:33:13] 2025-11-27 01:33:13,136 [wrapper] cleanup supervisor_pilot  739711 3057325
[2025-11-26 20:33:13] 2025-11-27 01:33:13,139 [wrapper] Test setup, not cleaning
[2025-11-26 20:33:13] 2025-11-27 01:33:13,142 [wrapper] apfmon messages muted
[2025-11-26 20:33:13] 2025-11-27 01:33:13,144 [wrapper] ==== wrapper stdout END ====
[2025-11-26 20:33:13] 2025-11-27 01:33:13,147 [wrapper] ==== wrapper stderr END ====
[2025-11-26 20:33:13]  *** Error codes and diagnostics ***
[2025-11-26 20:33:13]     "exeErrorCode": 0,
[2025-11-26 20:33:13]     "exeErrorDiag": "",
[2025-11-26 20:33:13]     "pilotErrorCode": 0,
[2025-11-26 20:33:13]     "pilotErrorDiag": "",
[2025-11-26 20:33:13]  *** Listing of results directory ***
[2025-11-26 20:33:13] total 1315328
[2025-11-26 20:33:13] -rw-r--r--. 1 boincer umatlas    576529 Nov 25 11:48 pilot3.tar.gz
[2025-11-26 20:33:13] -rwx------. 1 boincer umatlas     36292 Nov 25 12:01 runpilot2-wrapper.sh
[2025-11-26 20:33:13] -rw-r--r--. 1 boincer umatlas      5112 Nov 25 12:02 queuedata.json
[2025-11-26 20:33:13] -rw-r--r--. 1 boincer umatlas       100 Nov 26 00:03 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 20:33:13] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 26 00:03 run_atlas
[2025-11-26 20:33:13] -rw-r--r--. 1 boincer umatlas       105 Nov 26 00:03 job.xml
[2025-11-26 20:33:13] -rw-r--r--. 2 boincer umatlas 410885065 Nov 26 00:03 EVNT.47483658._002279.pool.root.1
[2025-11-26 20:33:13] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 00:03 start_atlas.sh
[2025-11-26 20:33:13] drwxrwx--x. 2 boincer umatlas      4096 Nov 26 00:03 shared
[2025-11-26 20:33:13] -rw-r--r--. 2 boincer umatlas    590111 Nov 26 00:03 input.tar.gz
[2025-11-26 20:33:13] -rw-r--r--. 1 boincer umatlas         0 Nov 26 00:03 boinc_lockfile
[2025-11-26 20:33:13] -rw-r--r--. 1 boincer umatlas      2786 Nov 26 00:03 pandaJob.out
[2025-11-26 20:33:13] -rw-------. 1 boincer umatlas        57 Nov 26 00:03 setup.sh.local
[2025-11-26 20:33:13] -rw-------. 1 boincer umatlas    991877 Nov 26 00:04 agis_schedconf.cvmfs.json
[2025-11-26 20:33:13] drwx------. 5 boincer umatlas      4096 Nov 26 00:04 pilot3
[2025-11-26 20:33:13] -rw-r--r--. 1 boincer umatlas       533 Nov 26 20:12 boinc_task_state.xml
[2025-11-26 20:33:13] -rw-------. 1 boincer umatlas 907695396 Nov 26 20:30 HITS.47556161._002625.pool.root.1
[2025-11-26 20:33:13] -rw-------. 1 boincer umatlas      1057 Nov 26 20:31 memory_monitor_summary.json
[2025-11-26 20:33:13] -rw-------. 1 boincer umatlas   1516240 Nov 26 20:31 agis_ddmendpoints.agis.ALL.json
[2025-11-26 20:33:13] -rw-r--r--. 1 boincer umatlas      6841 Nov 26 20:31 init_data.xml
[2025-11-26 20:33:13] -rw-------. 1 boincer umatlas   2435815 Nov 26 20:31 log.47556161._002625.job.log.tgz.1
[2025-11-26 20:33:13] -rw-------. 1 boincer umatlas      8633 Nov 26 20:32 heartbeat.json
[2025-11-26 20:33:13] -rw-------. 1 boincer umatlas        95 Nov 26 20:32 pilot_heartbeat.json
[2025-11-26 20:33:13] -rw-r--r--. 1 boincer umatlas      8192 Nov 26 20:33 boinc_mmap_file
[2025-11-26 20:33:13] -rw-------. 1 boincer umatlas      5010 Nov 26 20:33 pilotlog.txt
[2025-11-26 20:33:13] -rw-r--r--. 1 boincer umatlas        29 Nov 26 20:33 wrapper_checkpoint.txt
[2025-11-26 20:33:13] -rw-------. 1 boincer umatlas   9757901 Nov 26 20:33 log.47556161._002625.job.log.1
[2025-11-26 20:33:13] -rw-------. 1 boincer umatlas       353 Nov 26 20:33 output.list
[2025-11-26 20:33:13] -rw-r--r--. 1 boincer umatlas       620 Nov 26 20:33 runtime_log
[2025-11-26 20:33:13] -rw-------. 1 boincer umatlas  12216320 Nov 26 20:33 result.tar.gz
[2025-11-26 20:33:13] -rw-r--r--. 1 boincer umatlas      9353 Nov 26 20:33 runtime_log.err
[2025-11-26 20:33:13] -rw-------. 1 boincer umatlas       662 Nov 26 20:33 D2KKDm6aBi8n9Rq4apOajLDm4fhM0noT9bVo0NGKDm3fJKDm9YRX5n.diag
[2025-11-26 20:33:13] -rw-r--r--. 1 boincer umatlas     21771 Nov 26 20:33 stderr.txt
[2025-11-26 20:33:13] HITS file was successfully produced:
[2025-11-26 20:33:13] -rw-------. 1 boincer umatlas 907695396 Nov 26 20:30 shared/HITS.pool.root.1
[2025-11-26 20:33:13]  *** Contents of shared directory: ***
[2025-11-26 20:33:13] total 1300216
[2025-11-26 20:33:13] -rw-r--r--. 2 boincer umatlas 410885065 Nov 26 00:03 ATLAS.root_0
[2025-11-26 20:33:13] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 00:03 start_atlas.sh
[2025-11-26 20:33:13] -rw-r--r--. 2 boincer umatlas    590111 Nov 26 00:03 input.tar.gz
[2025-11-26 20:33:13] -rw-------. 1 boincer umatlas 907695396 Nov 26 20:30 HITS.pool.root.1
[2025-11-26 20:33:13] -rw-------. 1 boincer umatlas  12216320 Nov 26 20:33 result.tar.gz
20:33:15 (3049983): run_atlas exited; CPU time 255779.493520
20:33:15 (3049983): called boinc_finish(0)

</stderr_txt>
]]>

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