Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:00:34 (134163): wrapper (7.7.26015): starting
00:00:34 (134163): wrapper: running run_atlas (--nthreads 9)
[2025-11-26 00:00:34] Arguments: --nthreads 9
[2025-11-26 00:00:34] Threads: 9
[2025-11-26 00:00:34] Checking for CVMFS
[2025-11-26 00:00:34] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 00:00:35] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 00:00:35] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 00:00:36] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 00:00:36] 2.13.3.0 11250 29602 336680 153309 0 207 29763516 32935937 14387 16776704 0 94989235 99.478 127893082 39680 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-26 00:00:36] CVMFS is ok
[2025-11-26 00:00:36] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 00:00:36] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 00:00:36] Further information can be found at the LHC@home message board.
[2025-11-26 00:00:36] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 00:00:36] Checking for apptainer binary...
[2025-11-26 00:00:36] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 00:00:36] Running /usr/bin/apptainer --version
[2025-11-26 00:00:36] apptainer version 1.4.4-1.el9
[2025-11-26 00:00:36] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 00:00:37] c6-2-29-1.aglt2.org
[2025-11-26 00:00:37] apptainer works
[2025-11-26 00:00:37] Set ATHENA_PROC_NUMBER=9
[2025-11-26 00:00:37] Set ATHENA_CORE_NUMBER=9
[2025-11-26 00:00:37] Starting ATLAS job with PandaID=6897531535
[2025-11-26 00:00:37] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
22:45:30 (3669313): wrapper (7.7.26015): starting
22:45:30 (3669313): wrapper: running run_atlas (--nthreads 11)
[2025-11-26 22:45:30] Arguments: --nthreads 11
[2025-11-26 22:45:30] Threads: 11
[2025-11-26 22:45:30] This job has been restarted, cleaning up previous attempt
[2025-11-26 22:45:30] Checking for CVMFS
[2025-11-26 22:45:31] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 22:45:31] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 22:45:31] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 22:45:31] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 22:45:31] 2.13.3.0 11250 30967 339704 153345 1 404 30533994 32935937 15121 16776704 0 98913414 99.483 132569176 39545 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-26 22:45:31] CVMFS is ok
[2025-11-26 22:45:31] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 22:45:31] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 22:45:31] Further information can be found at the LHC@home message board.
[2025-11-26 22:45:31] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 22:45:31] Checking for apptainer binary...
[2025-11-26 22:45:31] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 22:45:31] Running /usr/bin/apptainer --version
[2025-11-26 22:45:31] apptainer version 1.4.4-1.el9
[2025-11-26 22:45:31] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 22:45:31] c6-2-29-1.aglt2.org
[2025-11-26 22:45:31] apptainer works
[2025-11-26 22:45:31] Set ATHENA_PROC_NUMBER=11
[2025-11-26 22:45:31] Set ATHENA_CORE_NUMBER=11
[2025-11-26 22:45:31] Starting ATLAS job with PandaID=6897531535
[2025-11-26 22:45:31] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 10:20:17]  *** The last 200 lines of the pilot log: ***
[2025-11-27 10:20:17] 2025-11-27 15:19:43,968 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 2737.141392857144
[2025-11-27 10:20:17] 2025-11-27 15:19:43,978 | INFO     | using path: /tmp/boinchome/slots/3/PanDA_Pilot-6897531535/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 10:20:17] 2025-11-27 15:19:43,979 | INFO     | extracted standard info from prmon json
[2025-11-27 10:20:17] 2025-11-27 15:19:43,979 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 10:20:17] 2025-11-27 15:19:43,979 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 10:20:17] 2025-11-27 15:19:43,991 | INFO     | fitting pss+swap vs Time
[2025-11-27 10:20:17] 2025-11-27 15:19:43,992 | INFO     | sum of square deviations: 98326007855.04424
[2025-11-27 10:20:17] 2025-11-27 15:19:44,001 | INFO     | sum of deviations: 1473161655518.9321
[2025-11-27 10:20:17] 2025-11-27 15:19:44,002 | INFO     | mean x: 1764235952.4105573
[2025-11-27 10:20:17] 2025-11-27 15:19:44,002 | INFO     | mean y: 3340733.7038123165
[2025-11-27 10:20:17] 2025-11-27 15:19:44,002 | INFO     | intersect: -26429185238.57713
[2025-11-27 10:20:17] 2025-11-27 15:19:44,003 | INFO     | chi2: 5.655490141838184
[2025-11-27 10:20:17] 2025-11-27 15:19:44,004 | INFO     | sum of square deviations: 96179444726.08583
[2025-11-27 10:20:17] 2025-11-27 15:19:44,013 | INFO     | sum of deviations: 1717343783623.8245
[2025-11-27 10:20:17] 2025-11-27 15:19:44,013 | INFO     | mean x: 1764235799.9468243
[2025-11-27 10:20:17] 2025-11-27 15:19:44,013 | INFO     | mean y: 3358068.3840472675
[2025-11-27 10:20:17] 2025-11-27 15:19:44,013 | INFO     | intersect: -31498169025.206463
[2025-11-27 10:20:17] 2025-11-27 15:19:44,014 | INFO     | chi2: 2.867101904080569
[2025-11-27 10:20:17] 2025-11-27 15:19:44,014 | INFO     | current chi2=2.867101904080569 (change=49.304095097428906 %)
[2025-11-27 10:20:17] 2025-11-27 15:19:44,015 | INFO     | sum of square deviations: 94064288467.74828
[2025-11-27 10:20:17] 2025-11-27 15:19:44,024 | INFO     | sum of deviations: 1797832243137.3228
[2025-11-27 10:20:17] 2025-11-27 15:19:44,024 | INFO     | mean x: 1764235647.4806547
[2025-11-27 10:20:17] 2025-11-27 15:19:44,024 | INFO     | mean y: 3363852.4479166665
[2025-11-27 10:20:17] 2025-11-27 15:19:44,024 | INFO     | intersect: -33716125054.550877
[2025-11-27 10:20:17] 2025-11-27 15:19:44,025 | INFO     | chi2: 2.2549315446640126
[2025-11-27 10:20:17] 2025-11-27 15:19:44,025 | INFO     | current chi2=2.2549315446640126 (change=21.351538239547473 %)
[2025-11-27 10:20:17] 2025-11-27 15:19:44,025 | INFO     | right removable region: 671
[2025-11-27 10:20:17] 2025-11-27 15:19:44,026 | INFO     | sum of square deviations: 96177608780.51692
[2025-11-27 10:20:17] 2025-11-27 15:19:44,035 | INFO     | sum of deviations: 1267326420166.6274
[2025-11-27 10:20:17] 2025-11-27 15:19:44,035 | INFO     | mean x: 1764236104.9394386
[2025-11-27 10:20:17] 2025-11-27 15:19:44,035 | INFO     | mean y: 3355316.2836041357
[2025-11-27 10:20:17] 2025-11-27 15:19:44,035 | INFO     | intersect: -23243875047.947918
[2025-11-27 10:20:17] 2025-11-27 15:19:44,036 | INFO     | chi2: 3.5812158324861336
[2025-11-27 10:20:17] 2025-11-27 15:19:44,036 | INFO     | current chi2=3.5812158324861336 (change=36.6771801794328 %)
[2025-11-27 10:20:17] 2025-11-27 15:19:44,037 | INFO     | sum of square deviations: 94061652055.11914
[2025-11-27 10:20:17] 2025-11-27 15:19:44,046 | INFO     | sum of deviations: 1196316957042.0173
[2025-11-27 10:20:17] 2025-11-27 15:19:44,046 | INFO     | mean x: 1764236257.4345238
[2025-11-27 10:20:17] 2025-11-27 15:19:44,046 | INFO     | mean y: 3360432.6026785714
[2025-11-27 10:20:17] 2025-11-27 15:19:44,046 | INFO     | intersect: -22434962782.903736
[2025-11-27 10:20:17] 2025-11-27 15:19:44,047 | INFO     | chi2: 3.5007508129400886
[2025-11-27 10:20:17] 2025-11-27 15:19:44,047 | INFO     | current chi2=3.5007508129400886 (change=2.246863169098216 %)
[2025-11-27 10:20:17] 2025-11-27 15:19:44,047 | INFO     | left removable region: 20
[2025-11-27 10:20:17] 2025-11-27 15:19:44,048 | INFO     | sum of square deviations: 85516087447.88031
[2025-11-27 10:20:17] 2025-11-27 15:19:44,056 | INFO     | sum of deviations: 1411786745622.1787
[2025-11-27 10:20:17] 2025-11-27 15:19:44,056 | INFO     | mean x: 1764236226.9585254
[2025-11-27 10:20:17] 2025-11-27 15:19:44,057 | INFO     | mean y: 3391558.5622119815
[2025-11-27 10:20:17] 2025-11-27 15:19:44,057 | INFO     | intersect: -29122418516.46673
[2025-11-27 10:20:17] 2025-11-27 15:19:44,057 | INFO     | chi2: 0.04036635261198765
[2025-11-27 10:20:17] 2025-11-27 15:19:44,058 | INFO     | current memory leak: 16.51 B/s (using 651 data points, chi2=0.04)
[2025-11-27 10:20:17] 2025-11-27 15:19:44,059 | INFO     | could have reported an average CPU frequency of 2733 MHz (26 samples)
[2025-11-27 10:20:17] 2025-11-27 15:19:44,059 | INFO     | ..............................
[2025-11-27 10:20:17] 2025-11-27 15:19:44,059 | INFO     | . Timing measurements:
[2025-11-27 10:20:17] 2025-11-27 15:19:44,059 | INFO     | . get job = 0 s
[2025-11-27 10:20:17] 2025-11-27 15:19:44,059 | INFO     | . initial setup = 2 s
[2025-11-27 10:20:17] 2025-11-27 15:19:44,059 | INFO     | . payload setup = 7 s
[2025-11-27 10:20:17] 2025-11-27 15:19:44,059 | INFO     | . stage-in = 0 s
[2025-11-27 10:20:17] 2025-11-27 15:19:44,059 | INFO     | . payload execution = 41596 s
[2025-11-27 10:20:17] 2025-11-27 15:19:44,059 | INFO     | . stage-out = 3 s
[2025-11-27 10:20:17] 2025-11-27 15:19:44,059 | INFO     | . log creation = 0 s
[2025-11-27 10:20:17] 2025-11-27 15:19:44,059 | INFO     | ..............................
[2025-11-27 10:20:17] 2025-11-27 15:19:44,149 | INFO     | 
[2025-11-27 10:20:17] 2025-11-27 15:19:44,149 | INFO     | job summary report
[2025-11-27 10:20:17] 2025-11-27 15:19:44,149 | INFO     | --------------------------------------------------
[2025-11-27 10:20:17] 2025-11-27 15:19:44,149 | INFO     | PanDA job id: 6897531535
[2025-11-27 10:20:17] 2025-11-27 15:19:44,149 | INFO     | task id: 47556161
[2025-11-27 10:20:17] 2025-11-27 15:19:44,149 | INFO     | errors: (none)
[2025-11-27 10:20:17] 2025-11-27 15:19:44,149 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 10:20:17] 2025-11-27 15:19:44,149 | INFO     | pilot state: finished 
[2025-11-27 10:20:17] 2025-11-27 15:19:44,149 | INFO     | transexitcode: 0
[2025-11-27 10:20:17] 2025-11-27 15:19:44,149 | INFO     | exeerrorcode: 0
[2025-11-27 10:20:17] 2025-11-27 15:19:44,150 | INFO     | exeerrordiag: 
[2025-11-27 10:20:17] 2025-11-27 15:19:44,150 | INFO     | exitcode: 0
[2025-11-27 10:20:17] 2025-11-27 15:19:44,150 | INFO     | exitmsg: OK
[2025-11-27 10:20:17] 2025-11-27 15:19:44,150 | INFO     | cpuconsumptiontime: 254358 s
[2025-11-27 10:20:17] 2025-11-27 15:19:44,150 | INFO     | nevents: 1000
[2025-11-27 10:20:17] 2025-11-27 15:19:44,150 | INFO     | neventsw: 0
[2025-11-27 10:20:17] 2025-11-27 15:19:44,150 | INFO     | pid: 3700660
[2025-11-27 10:20:17] 2025-11-27 15:19:44,150 | INFO     | pgrp: 3700660
[2025-11-27 10:20:17] 2025-11-27 15:19:44,150 | INFO     | corecount: 11
[2025-11-27 10:20:17] 2025-11-27 15:19:44,150 | INFO     | event service: False
[2025-11-27 10:20:17] 2025-11-27 15:19:44,150 | INFO     | sizes: {0: 2284265, 6: 2284527, 11: 2284555, 41608: 2328675, 41612: 2337725, 41622: 2337915}
[2025-11-27 10:20:17] 2025-11-27 15:19:44,150 | INFO     | --------------------------------------------------
[2025-11-27 10:20:17] 2025-11-27 15:19:44,150 | INFO     | 
[2025-11-27 10:20:17] 2025-11-27 15:19:44,150 | INFO     | executing command: ls -lF /tmp/boinchome/slots/3
[2025-11-27 10:20:17] 2025-11-27 15:19:44,176 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 10:20:17] 2025-11-27 15:19:44,177 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 10:20:17] 2025-11-27 15:19:44,178 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 10:20:17] 2025-11-27 15:19:44,178 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 10:20:17] 2025-11-27 15:19:44,178 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 10:20:17] 2025-11-27 15:19:44,179 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 10:20:17] 2025-11-27 15:19:44,179 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 10:20:17] 2025-11-27 15:19:44,179 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 10:20:17] 2025-11-27 15:19:44,179 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 10:20:17] 2025-11-27 15:19:44,179 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 10:20:17] 2025-11-27 15:19:44,180 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 10:20:17] 2025-11-27 15:19:44,180 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 10:20:17] 2025-11-27 15:19:44,180 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 10:20:17] 2025-11-27 15:19:44,180 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 10:20:17] 2025-11-27 15:19:44,180 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 10:20:17] 2025-11-27 15:19:44,180 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 10:20:17] 2025-11-27 15:19:44,180 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 10:20:17] 2025-11-27 15:19:44,181 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 10:20:17] 2025-11-27 15:19:44,181 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 10:20:17] 2025-11-27 15:19:44,181 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 10:20:17] 2025-11-27 15:19:44,181 | INFO     | job 6897531535 has completed (purged errors)
[2025-11-27 10:20:17] 2025-11-27 15:19:44,181 | INFO     | overall cleanup function is called
[2025-11-27 10:20:17] 2025-11-27 15:19:44,938 | INFO     | PID=3680840 has CPU usage=15.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-11-27 10:20:17] 2025-11-27 15:19:44,938 | INFO     | .. there are 20 such processes running
[2025-11-27 10:20:17] 2025-11-27 15:19:45,225 | INFO     | --- collectZombieJob: --- 10, [3700660]
[2025-11-27 10:20:17] 2025-11-27 15:19:45,225 | INFO     | zombie collector waiting for pid 3700660
[2025-11-27 10:20:17] 2025-11-27 15:19:45,226 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 10:20:17] 2025-11-27 15:19:45,226 | INFO     | collected zombie processes
[2025-11-27 10:20:17] 2025-11-27 15:19:45,226 | INFO     | will attempt to kill all subprocesses of pid=3700660
[2025-11-27 10:20:17] 2025-11-27 15:19:45,975 | INFO     | process IDs to be killed: [3700660] (in reverse order)
[2025-11-27 10:20:17] 2025-11-27 15:19:46,162 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 10:20:17] 2025-11-27 15:19:46,163 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 10:20:17] 2025-11-27 15:19:46,254 | INFO     | did not find any defunct processes belonging to 3700660
[2025-11-27 10:20:17] 2025-11-27 15:19:46,272 | INFO     | did not find any defunct processes belonging to 3700660
[2025-11-27 10:20:17] 2025-11-27 15:19:46,273 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 10:20:17] 2025-11-27 15:19:46,274 | INFO     | ready for new job
[2025-11-27 10:20:17] 2025-11-27 15:19:46,274 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 10:20:17] 2025-11-27 15:19:46,278 | INFO     | ***************************************
[2025-11-27 10:20:17] 2025-11-27 15:19:46,278 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 10:20:17] 2025-11-27 15:19:46,278 | INFO     | ***************************************
[2025-11-27 10:20:17] 2025-11-27 15:19:46,278 | INFO     | 
[2025-11-27 10:20:17] 2025-11-27 15:19:46,282 | INFO     | architecture information:
[2025-11-27 10:20:17] 2025-11-27 15:19:46,286 | INFO     | executing command: cat /etc/os-release
[2025-11-27 10:20:17] 2025-11-27 15:19:46,329 | INFO     | cat /etc/os-release:
[2025-11-27 10:20:17] NAME="CentOS Linux"
[2025-11-27 10:20:17] VERSION="7 (Core)"
[2025-11-27 10:20:17] ID="centos"
[2025-11-27 10:20:17] ID_LIKE="rhel fedora"
[2025-11-27 10:20:17] VERSION_ID="7"
[2025-11-27 10:20:17] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 10:20:17] ANSI_COLOR="0;31"
[2025-11-27 10:20:17] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 10:20:17] HOME_URL="https://www.centos.org/"
[2025-11-27 10:20:17] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 10:20:17] 
[2025-11-27 10:20:17] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 10:20:17] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 10:20:17] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 10:20:17] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 10:20:17] 
[2025-11-27 10:20:17] 2025-11-27 15:19:46,330 | INFO     | ***************************************
[2025-11-27 10:20:17] 2025-11-27 15:19:46,833 | INFO     | executing command: df -mP /tmp/boinchome/slots/3
[2025-11-27 10:20:17] 2025-11-27 15:19:46,868 | INFO     | sufficient remaining disk space (70254592000 B)
[2025-11-27 10:20:17] 2025-11-27 15:19:46,868 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 10:20:17] 2025-11-27 15:19:46,868 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 10:20:17] 2025-11-27 15:19:46,869 | INFO     | update_server=False
[2025-11-27 10:20:17] 2025-11-27 15:19:46,869 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 10:20:17] 2025-11-27 15:19:46,997 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-27 10:20:17] 2025-11-27 15:19:46,998 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-27 10:20:17] 2025-11-27 15:19:46,998 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 10:20:17] 2025-11-27 15:19:46,998 | INFO     | will abort loop
[2025-11-27 10:20:17] 2025-11-27 15:19:47,359 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 10:20:17] 2025-11-27 15:19:47,467 | INFO     | all job control threads have been joined
[2025-11-27 10:20:17] 2025-11-27 15:19:47,635 | INFO     | all data control threads have been joined
[2025-11-27 10:20:17] 2025-11-27 15:19:47,874 | INFO     | [job] retrieve thread has finished
[2025-11-27 10:20:17] 2025-11-27 15:19:47,882 | INFO     | [payload] failed_post thread has finished
[2025-11-27 10:20:17] 2025-11-27 15:19:47,903 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 10:20:17] 2025-11-27 15:19:48,005 | INFO     | [job] job monitor thread has finished
[2025-11-27 10:20:17] 2025-11-27 15:19:48,144 | INFO     | all payload control threads have been joined
[2025-11-27 10:20:17] 2025-11-27 15:19:48,473 | INFO     | [job] control thread has finished
[2025-11-27 10:20:17] 2025-11-27 15:19:48,540 | INFO     | [payload] validate_post thread has finished
[2025-11-27 10:20:17] 2025-11-27 15:19:48,597 | INFO     | [data] copytool_in thread has finished
[2025-11-27 10:20:17] 2025-11-27 15:19:48,628 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 10:20:17] 2025-11-27 15:19:48,642 | INFO     | [data] control thread has finished
[2025-11-27 10:20:17] 2025-11-27 15:19:49,006 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 10:20:17] 2025-11-27 15:19:49,090 | INFO     | [job] validate thread has finished
[2025-11-27 10:20:17] 2025-11-27 15:19:49,142 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 10:20:17] 2025-11-27 15:19:49,152 | INFO     | [payload] control thread has finished
[2025-11-27 10:20:17] 2025-11-27 15:19:49,161 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 10:20:17] 2025-11-27 15:19:49,365 | INFO     | [data] copytool_out thread has finished
[2025-11-27 10:20:17] 2025-11-27 15:19:49,603 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 10:20:17] 2025-11-27 15:19:50,168 | INFO     | [job] queue monitor thread has finished
[2025-11-27 10:20:17] 2025-11-27 15:19:53,614 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 10:20:17] 2025-11-27 15:19:59,588 | INFO     | [monitor] cgroup control has ended
[2025-11-27 10:20:17] 2025-11-27 15:20:00,413 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140373682079552)>', '<ExcThread(monitor, started 140373187868416)>']
[2025-11-27 10:20:17] 2025-11-27 15:20:05,439 | INFO     | all workflow threads have been joined
[2025-11-27 10:20:17] 2025-11-27 15:20:05,439 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 10:20:17] 2025-11-27 15:20:05,440 | INFO     | traces error code: 0
[2025-11-27 10:20:17] 2025-11-27 15:20:05,440 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 10:20:17] 2025-11-27 15:20:17,457 | INFO     | PID=3680840 has CPU usage=3.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 10:20:17] 2025-11-27 15:20:17,458 | INFO     | .. there are 20 such processes running
[2025-11-27 10:20:17] 2025-11-27 15:20:17,459 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 10:20:17] 2025-11-27 15:20:17,459 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 10:20:17] 2025-11-27 15:20:17,459 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 10:20:17] 2025-11-27 15:20:17,459 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 10:20:17] 2025-11-27 15:20:17,459 | INFO     | [monitor] control thread has ended
[2025-11-27 10:20:17] 2025-11-27 15:20:17,628 [wrapper] ==== pilot stdout END ====
[2025-11-27 10:20:17] 2025-11-27 15:20:17,659 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 10:20:17] 2025-11-27 15:20:17,662 [wrapper] pilotpid: 3680840
[2025-11-27 10:20:17] 2025-11-27 15:20:17,666 [wrapper] Pilot exit status: 0
[2025-11-27 10:20:17] 2025-11-27 15:20:17,682 [wrapper] pandaids: 6897531535 6897531535
[2025-11-27 10:20:17] 2025-11-27 15:20:17,750 [wrapper] cleanup supervisor_pilot 1310342 3680842
[2025-11-27 10:20:17] 2025-11-27 15:20:17,755 [wrapper] Test setup, not cleaning
[2025-11-27 10:20:17] 2025-11-27 15:20:17,758 [wrapper] apfmon messages muted
[2025-11-27 10:20:17] 2025-11-27 15:20:17,761 [wrapper] ==== wrapper stdout END ====
[2025-11-27 10:20:17] 2025-11-27 15:20:17,764 [wrapper] ==== wrapper stderr END ====
[2025-11-27 10:20:17]  *** Error codes and diagnostics ***
[2025-11-27 10:20:17]     "exeErrorCode": 0,
[2025-11-27 10:20:17]     "exeErrorDiag": "",
[2025-11-27 10:20:17]     "pilotErrorCode": 0,
[2025-11-27 10:20:17]     "pilotErrorDiag": "",
[2025-11-27 10:20:17]  *** Listing of results directory ***
[2025-11-27 10:20:17] total 1725964
[2025-11-27 10:20:17] drwx------. 5 boincer umatlas      4096 Nov  5 12:16 pilot3
[2025-11-27 10:20:17] -rw-r--r--. 1 boincer umatlas    576529 Nov 25 11:48 pilot3.tar.gz
[2025-11-27 10:20:17] -rwx------. 1 boincer umatlas     36292 Nov 25 12:01 runpilot2-wrapper.sh
[2025-11-27 10:20:17] -rw-r--r--. 1 boincer umatlas      5112 Nov 25 12:02 queuedata.json
[2025-11-27 10:20:17] -rw-r--r--. 1 boincer umatlas       100 Nov 26 00:00 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 10:20:17] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 26 00:00 run_atlas
[2025-11-27 10:20:17] -rw-r--r--. 1 boincer umatlas       105 Nov 26 00:00 job.xml
[2025-11-27 10:20:17] -rw-r--r--. 3 boincer umatlas 411776491 Nov 26 00:00 EVNT.47483658._002301.pool.root.1
[2025-11-27 10:20:17] -rw-r--r--. 3 boincer umatlas 411776491 Nov 26 00:00 ATLAS.root_0
[2025-11-27 10:20:17] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 00:00 start_atlas.sh
[2025-11-27 10:20:17] drwxrwx--x. 2 boincer umatlas      4096 Nov 26 00:00 shared
[2025-11-27 10:20:17] -rw-r--r--. 2 boincer umatlas    590104 Nov 26 00:00 input.tar.gz
[2025-11-27 10:20:17] -rw-r--r--. 1 boincer umatlas         0 Nov 26 00:00 boinc_lockfile
[2025-11-27 10:20:17] -rw-r--r--. 1 boincer umatlas      2786 Nov 26 22:45 pandaJob.out
[2025-11-27 10:20:17] -rw-------. 1 boincer umatlas        57 Nov 26 22:45 setup.sh.local
[2025-11-27 10:20:17] -rw-------. 1 boincer umatlas    991546 Nov 26 22:45 agis_schedconf.cvmfs.json
[2025-11-27 10:20:17] -rw-r--r--. 1 boincer umatlas       534 Nov 27 10:09 boinc_task_state.xml
[2025-11-27 10:20:17] -rw-------. 1 boincer umatlas 924731523 Nov 27 10:18 HITS.47556161._002848.pool.root.1
[2025-11-27 10:20:17] -rw-------. 1 boincer umatlas      1065 Nov 27 10:19 memory_monitor_summary.json
[2025-11-27 10:20:17] -rw-------. 1 boincer umatlas        96 Nov 27 10:19 pilot_heartbeat.json
[2025-11-27 10:20:17] -rw-------. 1 boincer umatlas   1516240 Nov 27 10:19 agis_ddmendpoints.agis.ALL.json
[2025-11-27 10:20:17] -rw-------. 1 boincer umatlas   2230734 Nov 27 10:19 log.47556161._002848.job.log.tgz.1
[2025-11-27 10:20:17] -rw-------. 1 boincer umatlas      8645 Nov 27 10:19 heartbeat.json
[2025-11-27 10:20:17] -rw-r--r--. 1 boincer umatlas      6846 Nov 27 10:20 init_data.xml
[2025-11-27 10:20:17] -rw-r--r--. 1 boincer umatlas        30 Nov 27 10:20 wrapper_checkpoint.txt
[2025-11-27 10:20:17] -rw-------. 1 boincer umatlas       823 Nov 27 10:20 pilotlog.txt
[2025-11-27 10:20:17] -rw-r--r--. 1 boincer umatlas      8192 Nov 27 10:20 boinc_mmap_file
[2025-11-27 10:20:17] -rw-------. 1 boincer umatlas   5354376 Nov 27 10:20 log.47556161._002848.job.log.1
[2025-11-27 10:20:17] -rw-------. 1 boincer umatlas       353 Nov 27 10:20 output.list
[2025-11-27 10:20:17] -rw-r--r--. 1 boincer umatlas       620 Nov 27 10:20 runtime_log
[2025-11-27 10:20:17] -rw-------. 1 boincer umatlas   7608320 Nov 27 10:20 result.tar.gz
[2025-11-27 10:20:17] -rw-------. 1 boincer umatlas       790 Nov 27 10:20 UUJKDmKbBi8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmHbMKDmUCqBXn.diag
[2025-11-27 10:20:17] -rw-r--r--. 1 boincer umatlas      9435 Nov 27 10:20 runtime_log.err
[2025-11-27 10:20:17] -rw-r--r--. 1 boincer umatlas     23572 Nov 27 10:20 stderr.txt
[2025-11-27 10:20:17] HITS file was successfully produced:
[2025-11-27 10:20:17] -rw-------. 1 boincer umatlas 924731523 Nov 27 10:18 shared/HITS.pool.root.1
[2025-11-27 10:20:17]  *** Contents of shared directory: ***
[2025-11-27 10:20:17] total 1313224
[2025-11-27 10:20:17] -rw-r--r--. 3 boincer umatlas 411776491 Nov 26 00:00 ATLAS.root_0
[2025-11-27 10:20:17] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 00:00 start_atlas.sh
[2025-11-27 10:20:17] -rw-r--r--. 2 boincer umatlas    590104 Nov 26 00:00 input.tar.gz
[2025-11-27 10:20:17] -rw-------. 1 boincer umatlas 924731523 Nov 27 10:18 HITS.pool.root.1
[2025-11-27 10:20:17] -rw-------. 1 boincer umatlas   7608320 Nov 27 10:20 result.tar.gz
10:20:18 (3669313): run_atlas exited; CPU time 255029.618474
10:20:18 (3669313): called boinc_finish(0)

</stderr_txt>
]]>

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