Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:01:05 (1398705): wrapper (7.7.26015): starting
00:01:05 (1398705): wrapper: running run_atlas (--nthreads 8)
[2025-11-26 00:01:05] Arguments: --nthreads 8
[2025-11-26 00:01:05] Threads: 8
[2025-11-26 00:01:05] Checking for CVMFS
[2025-11-26 00:01:05] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 00:01:06] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 00:01:06] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 00:01:07] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 00:01:07] 2.13.3.0 7489 29602 382272 153309 3 617 24448172 32935937 23168 16776704 0 190336710 99.645 182330950 41204 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-26 00:01:07] CVMFS is ok
[2025-11-26 00:01:07] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 00:01:07] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 00:01:07] Further information can be found at the LHC@home message board.
[2025-11-26 00:01:07] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 00:01:07] Checking for apptainer binary...
[2025-11-26 00:01:07] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 00:01:07] Running /usr/bin/apptainer --version
[2025-11-26 00:01:07] apptainer version 1.4.4-1.el9
[2025-11-26 00:01:07] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 00:01:07] c7-13-32.aglt2.org
[2025-11-26 00:01:07] apptainer works
[2025-11-26 00:01:07] Set ATHENA_PROC_NUMBER=8
[2025-11-26 00:01:07] Set ATHENA_CORE_NUMBER=8
[2025-11-26 00:01:07] Starting ATLAS job with PandaID=6896713775
[2025-11-26 00:01:07] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 14:49:18]  *** The last 200 lines of the pilot log: ***
[2025-11-26 14:49:18] 2025-11-26 19:48:41,050 | INFO     | monitor loop #3255: job 0:6896713775 is in state 'finished'
[2025-11-26 14:49:18] 2025-11-26 19:48:41,050 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 14:49:18] 2025-11-26 19:48:42,161 | INFO     | time since job start (53227s) is within the limit (172800.0s)
[2025-11-26 14:49:18] 2025-11-26 19:48:42,372 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-26 14:49:18] 2025-11-26 19:48:42,383 | INFO     | found 32 cores (16 cores per socket, 2 sockets) HT, CPU MHz: 3292.1863750000007
[2025-11-26 14:49:18] 2025-11-26 19:48:42,443 | INFO     | using path: /tmp/boinchome/slots/5/PanDA_Pilot-6896713775/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 14:49:18] 2025-11-26 19:48:42,444 | INFO     | extracted standard info from prmon json
[2025-11-26 14:49:18] 2025-11-26 19:48:42,444 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 14:49:18] 2025-11-26 19:48:42,444 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 14:49:18] 2025-11-26 19:48:42,492 | INFO     | fitting pss+swap vs Time
[2025-11-26 14:49:18] 2025-11-26 19:48:42,493 | INFO     | sum of square deviations: 204893533113.09058
[2025-11-26 14:49:18] 2025-11-26 19:48:42,555 | INFO     | sum of deviations: 2297122684642.696
[2025-11-26 14:49:18] 2025-11-26 19:48:42,555 | INFO     | mean x: 1764159907.9047072
[2025-11-26 14:49:18] 2025-11-26 19:48:42,555 | INFO     | mean y: 2801648.634902411
[2025-11-26 14:49:18] 2025-11-26 19:48:42,555 | INFO     | intersect: -19775722749.92826
[2025-11-26 14:49:18] 2025-11-26 19:48:42,556 | INFO     | chi2: 4.820282606447978
[2025-11-26 14:49:18] 2025-11-26 19:48:42,573 | INFO     | sum of square deviations: 201385575994.17667
[2025-11-26 14:49:18] 2025-11-26 19:48:42,632 | INFO     | sum of deviations: 2516111877010.558
[2025-11-26 14:49:18] 2025-11-26 19:48:42,632 | INFO     | mean x: 1764159755.4145496
[2025-11-26 14:49:18] 2025-11-26 19:48:42,633 | INFO     | mean y: 2811160.3048498845
[2025-11-26 14:49:18] 2025-11-26 19:48:42,633 | INFO     | intersect: -22038605121.02278
[2025-11-26 14:49:18] 2025-11-26 19:48:42,633 | INFO     | chi2: 2.670290454278767
[2025-11-26 14:49:18] 2025-11-26 19:48:42,633 | INFO     | current chi2=2.670290454278767 (change=44.60303114371795 %)
[2025-11-26 14:49:18] 2025-11-26 19:48:42,634 | INFO     | sum of square deviations: 197917635310.30817
[2025-11-26 14:49:18] 2025-11-26 19:48:42,671 | INFO     | sum of deviations: 2536758171482.13
[2025-11-26 14:49:18] 2025-11-26 19:48:42,672 | INFO     | mean x: 1764159602.9186993
[2025-11-26 14:49:18] 2025-11-26 19:48:42,672 | INFO     | mean y: 2812060.2590011614
[2025-11-26 14:49:18] 2025-11-26 19:48:42,684 | INFO     | intersect: -22608847994.6224
[2025-11-26 14:49:18] 2025-11-26 19:48:42,685 | INFO     | chi2: 2.4486081681388265
[2025-11-26 14:49:18] 2025-11-26 19:48:42,685 | INFO     | current chi2=2.4486081681388265 (change=8.301804239487346 %)
[2025-11-26 14:49:18] 2025-11-26 19:48:42,685 | INFO     | right removable region: 860
[2025-11-26 14:49:18] 2025-11-26 19:48:42,686 | INFO     | sum of square deviations: 201384722910.00443
[2025-11-26 14:49:18] 2025-11-26 19:48:42,739 | INFO     | sum of deviations: 2063129815291.1719
[2025-11-26 14:49:18] 2025-11-26 19:48:42,740 | INFO     | mean x: 1764160060.413395
[2025-11-26 14:49:18] 2025-11-26 19:48:42,740 | INFO     | mean y: 2811805.502309469
[2025-11-26 14:49:18] 2025-11-26 19:48:42,748 | INFO     | intersect: -18070511567.747158
[2025-11-26 14:49:18] 2025-11-26 19:48:42,749 | INFO     | chi2: 2.6881940521198184
[2025-11-26 14:49:18] 2025-11-26 19:48:42,749 | INFO     | current chi2=2.6881940521198184 (change=44.23160898234711 %)
[2025-11-26 14:49:18] 2025-11-26 19:48:42,750 | INFO     | sum of square deviations: 197916561827.64
[2025-11-26 14:49:18] 2025-11-26 19:48:42,791 | INFO     | sum of deviations: 1999660584422.201
[2025-11-26 14:49:18] 2025-11-26 19:48:42,791 | INFO     | mean x: 1764160212.9140534
[2025-11-26 14:49:18] 2025-11-26 19:48:42,792 | INFO     | mean y: 2814595.867595819
[2025-11-26 14:49:18] 2025-11-26 19:48:42,792 | INFO     | intersect: -17821472617.863937
[2025-11-26 14:49:18] 2025-11-26 19:48:42,792 | INFO     | chi2: 2.6587277837183447
[2025-11-26 14:49:18] 2025-11-26 19:48:42,792 | INFO     | current chi2=2.6587277837183447 (change=1.096136210041742 %)
[2025-11-26 14:49:18] 2025-11-26 19:48:42,792 | INFO     | left removable region: 20
[2025-11-26 14:49:18] 2025-11-26 19:48:42,793 | INFO     | sum of square deviations: 183785436114.78094
[2025-11-26 14:49:18] 2025-11-26 19:48:42,822 | INFO     | sum of deviations: 2110208055753.4492
[2025-11-26 14:49:18] 2025-11-26 19:48:42,822 | INFO     | mean x: 1764160182.4380953
[2025-11-26 14:49:18] 2025-11-26 19:48:42,822 | INFO     | mean y: 2830661.6047619046
[2025-11-26 14:49:18] 2025-11-26 19:48:42,827 | INFO     | intersect: -20253099880.657295
[2025-11-26 14:49:18] 2025-11-26 19:48:42,828 | INFO     | chi2: 0.23000829782205612
[2025-11-26 14:49:18] 2025-11-26 19:48:42,828 | INFO     | current memory leak: 11.48 B/s (using 840 data points, chi2=0.23)
[2025-11-26 14:49:18] 2025-11-26 19:48:42,829 | INFO     | could have reported an average CPU frequency of 3290 MHz (33 samples)
[2025-11-26 14:49:18] 2025-11-26 19:48:42,829 | INFO     | ..............................
[2025-11-26 14:49:18] 2025-11-26 19:48:42,829 | INFO     | . Timing measurements:
[2025-11-26 14:49:18] 2025-11-26 19:48:42,829 | INFO     | . get job = 0 s
[2025-11-26 14:49:18] 2025-11-26 19:48:42,829 | INFO     | . initial setup = 2 s
[2025-11-26 14:49:18] 2025-11-26 19:48:42,829 | INFO     | . payload setup = 18 s
[2025-11-26 14:49:18] 2025-11-26 19:48:42,829 | INFO     | . stage-in = 0 s
[2025-11-26 14:49:18] 2025-11-26 19:48:42,829 | INFO     | . payload execution = 53144 s
[2025-11-26 14:49:18] 2025-11-26 19:48:42,829 | INFO     | . stage-out = 6 s
[2025-11-26 14:49:18] 2025-11-26 19:48:42,829 | INFO     | . log creation = 1 s
[2025-11-26 14:49:18] 2025-11-26 19:48:42,829 | INFO     | ..............................
[2025-11-26 14:49:18] 2025-11-26 19:48:43,217 | INFO     | 
[2025-11-26 14:49:18] 2025-11-26 19:48:43,217 | INFO     | job summary report
[2025-11-26 14:49:18] 2025-11-26 19:48:43,217 | INFO     | --------------------------------------------------
[2025-11-26 14:49:18] 2025-11-26 19:48:43,217 | INFO     | PanDA job id: 6896713775
[2025-11-26 14:49:18] 2025-11-26 19:48:43,217 | INFO     | task id: 47556161
[2025-11-26 14:49:18] 2025-11-26 19:48:43,218 | INFO     | errors: (none)
[2025-11-26 14:49:18] 2025-11-26 19:48:43,218 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 14:49:18] 2025-11-26 19:48:43,218 | INFO     | pilot state: finished 
[2025-11-26 14:49:18] 2025-11-26 19:48:43,218 | INFO     | transexitcode: 0
[2025-11-26 14:49:18] 2025-11-26 19:48:43,218 | INFO     | exeerrorcode: 0
[2025-11-26 14:49:18] 2025-11-26 19:48:43,218 | INFO     | exeerrordiag: 
[2025-11-26 14:49:18] 2025-11-26 19:48:43,218 | INFO     | exitcode: 0
[2025-11-26 14:49:18] 2025-11-26 19:48:43,218 | INFO     | exitmsg: OK
[2025-11-26 14:49:18] 2025-11-26 19:48:43,218 | INFO     | cpuconsumptiontime: 198304 s
[2025-11-26 14:49:18] 2025-11-26 19:48:43,218 | INFO     | nevents: 1000
[2025-11-26 14:49:18] 2025-11-26 19:48:43,218 | INFO     | neventsw: 0
[2025-11-26 14:49:18] 2025-11-26 19:48:43,218 | INFO     | pid: 1429070
[2025-11-26 14:49:18] 2025-11-26 19:48:43,218 | INFO     | pgrp: 1429070
[2025-11-26 14:49:18] 2025-11-26 19:48:43,218 | INFO     | corecount: 8
[2025-11-26 14:49:18] 2025-11-26 19:48:43,218 | INFO     | event service: False
[2025-11-26 14:49:18] 2025-11-26 19:48:43,218 | INFO     | sizes: {0: 2284035, 1: 2284290, 12: 2284290, 17: 2284580, 23: 2284608, 53166: 2334071, 53167: 2334198, 53173: 2343248, 53175: 2343304, 53184: 2343614}
[2025-11-26 14:49:18] 2025-11-26 19:48:43,219 | INFO     | --------------------------------------------------
[2025-11-26 14:49:18] 2025-11-26 19:48:43,219 | INFO     | 
[2025-11-26 14:49:18] 2025-11-26 19:48:43,219 | INFO     | executing command: ls -lF /tmp/boinchome/slots/5
[2025-11-26 14:49:18] 2025-11-26 19:48:43,348 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 14:49:18] 2025-11-26 19:48:43,349 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 14:49:18] 2025-11-26 19:48:43,349 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 14:49:18] 2025-11-26 19:48:43,349 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 14:49:18] 2025-11-26 19:48:43,349 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 14:49:18] 2025-11-26 19:48:43,349 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 14:49:18] 2025-11-26 19:48:43,349 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 14:49:18] 2025-11-26 19:48:43,349 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 14:49:18] 2025-11-26 19:48:43,349 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 14:49:18] 2025-11-26 19:48:43,349 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 14:49:18] 2025-11-26 19:48:43,349 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 14:49:18] 2025-11-26 19:48:43,349 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 14:49:18] 2025-11-26 19:48:43,350 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 14:49:18] 2025-11-26 19:48:43,350 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 14:49:18] 2025-11-26 19:48:43,350 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 14:49:18] 2025-11-26 19:48:43,350 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 14:49:18] 2025-11-26 19:48:43,350 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 14:49:18] 2025-11-26 19:48:43,350 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 14:49:18] 2025-11-26 19:48:43,350 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 14:49:18] 2025-11-26 19:48:43,350 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 14:49:18] 2025-11-26 19:48:43,350 | INFO     | job 6896713775 has completed (purged errors)
[2025-11-26 14:49:18] 2025-11-26 19:48:43,350 | INFO     | overall cleanup function is called
[2025-11-26 14:49:18] 2025-11-26 19:48:44,383 | INFO     | --- collectZombieJob: --- 10, [1429070]
[2025-11-26 14:49:18] 2025-11-26 19:48:44,383 | INFO     | zombie collector waiting for pid 1429070
[2025-11-26 14:49:18] 2025-11-26 19:48:44,383 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 14:49:18] 2025-11-26 19:48:44,383 | INFO     | collected zombie processes
[2025-11-26 14:49:18] 2025-11-26 19:48:44,384 | INFO     | will attempt to kill all subprocesses of pid=1429070
[2025-11-26 14:49:18] 2025-11-26 19:48:46,730 | INFO     | process IDs to be killed: [1429070] (in reverse order)
[2025-11-26 14:49:18] 2025-11-26 19:48:47,339 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 14:49:18] 2025-11-26 19:48:47,347 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 14:49:18] 2025-11-26 19:48:47,455 | INFO     | did not find any defunct processes belonging to 1429070
[2025-11-26 14:49:18] 2025-11-26 19:48:47,475 | INFO     | did not find any defunct processes belonging to 1429070
[2025-11-26 14:49:18] 2025-11-26 19:48:47,484 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 14:49:18] 2025-11-26 19:48:47,484 | INFO     | ready for new job
[2025-11-26 14:49:18] 2025-11-26 19:48:47,484 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 14:49:18] 2025-11-26 19:48:47,488 | INFO     | ***************************************
[2025-11-26 14:49:18] 2025-11-26 19:48:47,488 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 14:49:18] 2025-11-26 19:48:47,488 | INFO     | ***************************************
[2025-11-26 14:49:18] 2025-11-26 19:48:47,488 | INFO     | 
[2025-11-26 14:49:18] 2025-11-26 19:48:47,497 | INFO     | architecture information:
[2025-11-26 14:49:18] 2025-11-26 19:48:47,498 | INFO     | executing command: cat /etc/os-release
[2025-11-26 14:49:18] 2025-11-26 19:48:47,544 | INFO     | cat /etc/os-release:
[2025-11-26 14:49:18] NAME="CentOS Linux"
[2025-11-26 14:49:18] VERSION="7 (Core)"
[2025-11-26 14:49:18] ID="centos"
[2025-11-26 14:49:18] ID_LIKE="rhel fedora"
[2025-11-26 14:49:18] VERSION_ID="7"
[2025-11-26 14:49:18] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 14:49:18] ANSI_COLOR="0;31"
[2025-11-26 14:49:18] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 14:49:18] HOME_URL="https://www.centos.org/"
[2025-11-26 14:49:18] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 14:49:18] 
[2025-11-26 14:49:18] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 14:49:18] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 14:49:18] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 14:49:18] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 14:49:18] 
[2025-11-26 14:49:18] 2025-11-26 19:48:47,546 | INFO     | ***************************************
[2025-11-26 14:49:18] 2025-11-26 19:48:48,049 | INFO     | executing command: df -mP /tmp/boinchome/slots/5
[2025-11-26 14:49:18] 2025-11-26 19:48:48,071 | INFO     | sufficient remaining disk space (91016396800 B)
[2025-11-26 14:49:18] 2025-11-26 19:48:48,072 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 14:49:18] 2025-11-26 19:48:48,072 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 14:49:18] 2025-11-26 19:48:48,072 | INFO     | update_server=False
[2025-11-26 14:49:18] 2025-11-26 19:48:48,072 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 14:49:18] 2025-11-26 19:48:48,073 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 14:49:18] 2025-11-26 19:48:48,073 | INFO     | aborting loop
[2025-11-26 14:49:18] 2025-11-26 19:48:48,085 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 14:49:18] 2025-11-26 19:48:48,102 | INFO     | all payload control threads have been joined
[2025-11-26 14:49:18] 2025-11-26 19:48:48,282 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 14:49:18] 2025-11-26 19:48:48,806 | INFO     | all job control threads have been joined
[2025-11-26 14:49:18] 2025-11-26 19:48:48,885 | INFO     | all data control threads have been joined
[2025-11-26 14:49:18] 2025-11-26 19:48:48,895 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 14:49:18] 2025-11-26 19:48:49,078 | INFO     | [job] retrieve thread has finished
[2025-11-26 14:49:18] 2025-11-26 19:48:49,080 | INFO     | [job] job monitor thread has finished
[2025-11-26 14:49:18] 2025-11-26 19:48:49,109 | INFO     | [payload] control thread has finished
[2025-11-26 14:49:18] 2025-11-26 19:48:49,111 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 14:49:18] 2025-11-26 19:48:49,277 | INFO     | [payload] validate_post thread has finished
[2025-11-26 14:49:18] 2025-11-26 19:48:49,278 | INFO     | [payload] failed_post thread has finished
[2025-11-26 14:49:18] 2025-11-26 19:48:49,281 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 14:49:18] 2025-11-26 19:48:49,287 | INFO     | [job] queue monitor thread has finished
[2025-11-26 14:49:18] 2025-11-26 19:48:49,643 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 14:49:18] 2025-11-26 19:48:49,654 | INFO     | [job] validate thread has finished
[2025-11-26 14:49:18] 2025-11-26 19:48:49,795 | INFO     | [data] copytool_in thread has finished
[2025-11-26 14:49:18] 2025-11-26 19:48:49,812 | INFO     | [job] control thread has finished
[2025-11-26 14:49:18] 2025-11-26 19:48:49,891 | INFO     | [data] control thread has finished
[2025-11-26 14:49:18] 2025-11-26 19:48:50,094 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 14:49:18] 2025-11-26 19:48:50,095 | INFO     | [data] copytool_out thread has finished
[2025-11-26 14:49:18] 2025-11-26 19:48:52,906 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 14:49:18] 2025-11-26 19:49:10,613 | INFO     | [monitor] cgroup control has ended
[2025-11-26 14:49:18] 2025-11-26 19:49:12,369 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139768267556672)>', '<ExcThread(monitor, started 139767916238592)>']
[2025-11-26 14:49:18] 2025-11-26 19:49:16,382 | INFO     | PID=1407563 has CPU usage=5.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-26 14:49:18] 2025-11-26 19:49:16,382 | INFO     | .. there are 40 such processes running
[2025-11-26 14:49:18] 2025-11-26 19:49:16,386 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 14:49:18] 2025-11-26 19:49:16,386 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 14:49:18] 2025-11-26 19:49:16,386 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 14:49:18] 2025-11-26 19:49:16,386 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 14:49:18] 2025-11-26 19:49:16,386 | INFO     | [monitor] control thread has ended
[2025-11-26 14:49:18] 2025-11-26 19:49:17,394 | INFO     | all workflow threads have been joined
[2025-11-26 14:49:18] 2025-11-26 19:49:17,394 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 14:49:18] 2025-11-26 19:49:17,395 | INFO     | traces error code: 0
[2025-11-26 14:49:18] 2025-11-26 19:49:17,396 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 14:49:18] 2025-11-26 19:49:17,920 [wrapper] ==== pilot stdout END ====
[2025-11-26 14:49:18] 2025-11-26 19:49:17,964 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 14:49:18] 2025-11-26 19:49:18,010 [wrapper] pilotpid: 1407563
[2025-11-26 14:49:18] 2025-11-26 19:49:18,016 [wrapper] Pilot exit status: 0
[2025-11-26 14:49:18] 2025-11-26 19:49:18,028 [wrapper] pandaids: 6896713775
[2025-11-26 14:49:18] 2025-11-26 19:49:18,152 [wrapper] cleanup supervisor_pilot 1045874 1407565
[2025-11-26 14:49:18] 2025-11-26 19:49:18,156 [wrapper] Test setup, not cleaning
[2025-11-26 14:49:18] 2025-11-26 19:49:18,169 [wrapper] apfmon messages muted
[2025-11-26 14:49:18] 2025-11-26 19:49:18,172 [wrapper] ==== wrapper stdout END ====
[2025-11-26 14:49:18] 2025-11-26 19:49:18,175 [wrapper] ==== wrapper stderr END ====
[2025-11-26 14:49:18]  *** Error codes and diagnostics ***
[2025-11-26 14:49:18]     "exeErrorCode": 0,
[2025-11-26 14:49:18]     "exeErrorDiag": "",
[2025-11-26 14:49:18]     "pilotErrorCode": 0,
[2025-11-26 14:49:18]     "pilotErrorDiag": "",
[2025-11-26 14:49:18]  *** Listing of results directory ***
[2025-11-26 14:49:18] total 1309296
[2025-11-26 14:49:18] -rw-r--r--. 1 boincer umatlas    576529 Nov 25 00:12 pilot3.tar.gz
[2025-11-26 14:49:18] -rwx------. 1 boincer umatlas     36292 Nov 25 00:51 runpilot2-wrapper.sh
[2025-11-26 14:49:18] -rw-r--r--. 1 boincer umatlas      5112 Nov 25 00:51 queuedata.json
[2025-11-26 14:49:18] -rw-r--r--. 1 boincer umatlas       100 Nov 26 00:01 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 14:49:18] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 26 00:01 run_atlas
[2025-11-26 14:49:18] -rw-r--r--. 1 boincer umatlas       105 Nov 26 00:01 job.xml
[2025-11-26 14:49:18] -rw-r--r--. 2 boincer umatlas 408080604 Nov 26 00:01 EVNT.47483658._002113.pool.root.1
[2025-11-26 14:49:18] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 00:01 start_atlas.sh
[2025-11-26 14:49:18] drwxrwx--x. 2 boincer umatlas      4096 Nov 26 00:01 shared
[2025-11-26 14:49:18] -rw-r--r--. 2 boincer umatlas    590104 Nov 26 00:01 input.tar.gz
[2025-11-26 14:49:18] -rw-r--r--. 1 boincer umatlas         0 Nov 26 00:01 boinc_lockfile
[2025-11-26 14:49:18] -rw-r--r--. 1 boincer umatlas      2784 Nov 26 00:01 pandaJob.out
[2025-11-26 14:49:18] -rw-------. 1 boincer umatlas        57 Nov 26 00:01 setup.sh.local
[2025-11-26 14:49:18] -rw-------. 1 boincer umatlas    991877 Nov 26 00:01 agis_schedconf.cvmfs.json
[2025-11-26 14:49:18] drwx------. 5 boincer umatlas      4096 Nov 26 00:01 pilot3
[2025-11-26 14:49:18] -rw-r--r--. 1 boincer umatlas       533 Nov 26 14:40 boinc_task_state.xml
[2025-11-26 14:49:18] -rw-r--r--. 1 boincer umatlas      6902 Nov 26 14:47 init_data.xml
[2025-11-26 14:49:18] -rw-------. 1 boincer umatlas 911101259 Nov 26 14:47 HITS.47556161._000965.pool.root.1
[2025-11-26 14:49:18] -rw-------. 1 boincer umatlas      1059 Nov 26 14:48 memory_monitor_summary.json
[2025-11-26 14:49:18] -rw-------. 1 boincer umatlas   1516240 Nov 26 14:48 agis_ddmendpoints.agis.ALL.json
[2025-11-26 14:49:18] -rw-------. 1 boincer umatlas   2036903 Nov 26 14:48 log.47556161._000965.job.log.tgz.1
[2025-11-26 14:49:18] -rw-------. 1 boincer umatlas      8609 Nov 26 14:48 heartbeat.json
[2025-11-26 14:49:18] -rw-r--r--. 1 boincer umatlas      8192 Nov 26 14:49 boinc_mmap_file
[2025-11-26 14:49:18] -rw-------. 1 boincer umatlas        95 Nov 26 14:49 pilot_heartbeat.json
[2025-11-26 14:49:18] -rw-r--r--. 1 boincer umatlas        29 Nov 26 14:49 wrapper_checkpoint.txt
[2025-11-26 14:49:18] -rw-------. 1 boincer umatlas      4824 Nov 26 14:49 pilotlog.txt
[2025-11-26 14:49:18] -rw-------. 1 boincer umatlas   6771765 Nov 26 14:49 log.47556161._000965.job.log.1
[2025-11-26 14:49:18] -rw-------. 1 boincer umatlas       353 Nov 26 14:49 output.list
[2025-11-26 14:49:18] -rw-r--r--. 1 boincer umatlas       620 Nov 26 14:49 runtime_log
[2025-11-26 14:49:18] -rw-------. 1 boincer umatlas   8826880 Nov 26 14:49 result.tar.gz
[2025-11-26 14:49:18] -rw-r--r--. 1 boincer umatlas      9343 Nov 26 14:49 runtime_log.err
[2025-11-26 14:49:18] -rw-------. 1 boincer umatlas       664 Nov 26 14:49 6pgLDmm80h8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmGNJKDmyhdcFm.diag
[2025-11-26 14:49:18] -rw-r--r--. 1 boincer umatlas     21374 Nov 26 14:49 stderr.txt
[2025-11-26 14:49:18] HITS file was successfully produced:
[2025-11-26 14:49:18] -rw-------. 1 boincer umatlas 911101259 Nov 26 14:47 shared/HITS.pool.root.1
[2025-11-26 14:49:18]  *** Contents of shared directory: ***
[2025-11-26 14:49:18] total 1297488
[2025-11-26 14:49:18] -rw-r--r--. 2 boincer umatlas 408080604 Nov 26 00:01 ATLAS.root_0
[2025-11-26 14:49:18] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 00:01 start_atlas.sh
[2025-11-26 14:49:18] -rw-r--r--. 2 boincer umatlas    590104 Nov 26 00:01 input.tar.gz
[2025-11-26 14:49:18] -rw-------. 1 boincer umatlas 911101259 Nov 26 14:47 HITS.pool.root.1
[2025-11-26 14:49:18] -rw-------. 1 boincer umatlas   8826880 Nov 26 14:49 result.tar.gz
14:49:20 (1398705): run_atlas exited; CPU time 198278.027376
14:49:20 (1398705): called boinc_finish(0)

</stderr_txt>
]]>

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