Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:04:37 (3417548): wrapper (7.7.26015): starting
00:04:37 (3417548): wrapper: running run_atlas (--nthreads 9)
[2025-11-26 00:04:37] Arguments: --nthreads 9
[2025-11-26 00:04:37] Threads: 9
[2025-11-26 00:04:37] Checking for CVMFS
[2025-11-26 00:04:38] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 00:04:38] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 00:04:38] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 00:04:40] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 00:04:40] 2.13.3.0 11754 29561 225824 153309 1 390 22124795 32935936 53928 16776704 0 159913567 99.576 165826123 36167 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-26 00:04:40] CVMFS is ok
[2025-11-26 00:04:40] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 00:04:40] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 00:04:40] Further information can be found at the LHC@home message board.
[2025-11-26 00:04:40] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 00:04:40] Checking for apptainer binary...
[2025-11-26 00:04:40] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 00:04:40] Running /usr/bin/apptainer --version
[2025-11-26 00:04:40] apptainer version 1.4.4-1.el9
[2025-11-26 00:04:40] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 00:04:41] c7-2-38.aglt2.org
[2025-11-26 00:04:41] apptainer works
[2025-11-26 00:04:41] Set ATHENA_PROC_NUMBER=9
[2025-11-26 00:04:41] Set ATHENA_CORE_NUMBER=9
[2025-11-26 00:04:41] Starting ATLAS job with PandaID=6897507581
[2025-11-26 00:04:41] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/9 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 04:07:45]  *** The last 200 lines of the pilot log: ***
[2025-11-27 04:07:45] 2025-11-27 09:06:57,011 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-11-27 04:07:45] 2025-11-27 09:06:57,011 | INFO     | log transfer has been attempted: DONE
[2025-11-27 04:07:45] 2025-11-27 09:06:57,011 | INFO     | job 6897507581 has finished - writing final server update
[2025-11-27 04:07:45] 2025-11-27 09:06:57,012 | INFO     | total number of processed events: 1000 (read)
[2025-11-27 04:07:45] 2025-11-27 09:06:57,020 | INFO     | executing command: lscpu
[2025-11-27 04:07:45] 2025-11-27 09:06:57,096 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-11-27 04:07:45] 2025-11-27 09:06:58,120 | INFO     | time since job start (100834s) is within the limit (172800.0s)
[2025-11-27 04:07:45] 2025-11-27 09:06:59,091 | INFO     | monitor loop #4285: job 0:6897507581 is in state 'finished'
[2025-11-27 04:07:45] 2025-11-27 09:06:59,091 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 04:07:45] 2025-11-27 09:07:00,127 | INFO     | time since job start (100836s) is within the limit (172800.0s)
[2025-11-27 04:07:45] 2025-11-27 09:07:01,596 | INFO     | monitor loop #4286: job 0:6897507581 is in state 'finished'
[2025-11-27 04:07:45] 2025-11-27 09:07:01,596 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 04:07:45] 2025-11-27 09:07:02,133 | INFO     | time since job start (100838s) is within the limit (172800.0s)
[2025-11-27 04:07:45] 2025-11-27 09:07:04,106 | INFO     | monitor loop #4287: job 0:6897507581 is in state 'finished'
[2025-11-27 04:07:45] 2025-11-27 09:07:04,106 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 04:07:45] 2025-11-27 09:07:04,144 | INFO     | time since job start (100840s) is within the limit (172800.0s)
[2025-11-27 04:07:45] 2025-11-27 09:07:05,741 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-27 04:07:45] 2025-11-27 09:07:05,755 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 3176.142166666667
[2025-11-27 04:07:45] 2025-11-27 09:07:05,769 | INFO     | using path: /tmp/boinchome/slots/9/PanDA_Pilot-6897507581/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 04:07:45] 2025-11-27 09:07:05,770 | INFO     | extracted standard info from prmon json
[2025-11-27 04:07:45] 2025-11-27 09:07:05,770 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 04:07:45] 2025-11-27 09:07:05,770 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 04:07:45] 2025-11-27 09:07:05,787 | INFO     | fitting pss+swap vs Time
[2025-11-27 04:07:45] 2025-11-27 09:07:05,789 | INFO     | sum of square deviations: 964727437170.3284
[2025-11-27 04:07:45] 2025-11-27 09:07:05,823 | INFO     | sum of deviations: 30615611213675.67
[2025-11-27 04:07:45] 2025-11-27 09:07:05,823 | INFO     | mean x: 1764192188.51798
[2025-11-27 04:07:45] 2025-11-27 09:07:05,823 | INFO     | mean y: 5293163.991583779
[2025-11-27 04:07:45] 2025-11-27 09:07:05,824 | INFO     | intersect: -55981320327.8915
[2025-11-27 04:07:45] 2025-11-27 09:07:05,825 | INFO     | chi2: 66.78260301750858
[2025-11-27 04:07:45] 2025-11-27 09:07:05,826 | INFO     | sum of square deviations: 955857297043.6931
[2025-11-27 04:07:45] 2025-11-27 09:07:05,857 | INFO     | sum of deviations: 31599627052693.297
[2025-11-27 04:07:45] 2025-11-27 09:07:05,857 | INFO     | mean x: 1764192027.0798771
[2025-11-27 04:07:45] 2025-11-27 09:07:05,857 | INFO     | mean y: 5311074.949308756
[2025-11-27 04:07:45] 2025-11-27 09:07:05,857 | INFO     | intersect: -58317003644.494446
[2025-11-27 04:07:45] 2025-11-27 09:07:05,858 | INFO     | chi2: 61.51016738658834
[2025-11-27 04:07:45] 2025-11-27 09:07:05,858 | INFO     | current chi2=61.51016738658834 (change=7.894923816518422 %)
[2025-11-27 04:07:45] 2025-11-27 09:07:05,858 | INFO     | right removable region: 1301
[2025-11-27 04:07:45] 2025-11-27 09:07:05,860 | INFO     | sum of square deviations: 947671480414.5682
[2025-11-27 04:07:45] 2025-11-27 09:07:05,891 | INFO     | sum of deviations: 29093517851150.59
[2025-11-27 04:07:45] 2025-11-27 09:07:05,891 | INFO     | mean x: 1764192412.3794162
[2025-11-27 04:07:45] 2025-11-27 09:07:05,891 | INFO     | mean y: 5313141.195084485
[2025-11-27 04:07:45] 2025-11-27 09:07:05,891 | INFO     | intersect: -54155400252.830086
[2025-11-27 04:07:45] 2025-11-27 09:07:05,892 | INFO     | chi2: 62.423508126320016
[2025-11-27 04:07:45] 2025-11-27 09:07:05,892 | INFO     | current chi2=62.423508126320016 (change=6.5272910821486345 %)
[2025-11-27 04:07:45] 2025-11-27 09:07:05,892 | INFO     | left removable region: 10
[2025-11-27 04:07:45] 2025-11-27 09:07:05,893 | INFO     | sum of square deviations: 920251467372.0696
[2025-11-27 04:07:45] 2025-11-27 09:07:05,925 | INFO     | sum of deviations: 28847130107561.195
[2025-11-27 04:07:45] 2025-11-27 09:07:05,925 | INFO     | mean x: 1764192443.638265
[2025-11-27 04:07:45] 2025-11-27 09:07:05,925 | INFO     | mean y: 5354212.906274206
[2025-11-27 04:07:45] 2025-11-27 09:07:05,925 | INFO     | intersect: -55296800427.21569
[2025-11-27 04:07:45] 2025-11-27 09:07:05,926 | INFO     | chi2: 52.43784892081563
[2025-11-27 04:07:45] 2025-11-27 09:07:05,926 | INFO     | current memory leak: 31.35 B/s (using 1291 data points, chi2=52.44)
[2025-11-27 04:07:45] 2025-11-27 09:07:05,927 | INFO     | could have reported an average CPU frequency of 3166 MHz (47 samples)
[2025-11-27 04:07:45] 2025-11-27 09:07:05,928 | INFO     | ..............................
[2025-11-27 04:07:45] 2025-11-27 09:07:05,928 | INFO     | . Timing measurements:
[2025-11-27 04:07:45] 2025-11-27 09:07:05,928 | INFO     | . get job = 0 s
[2025-11-27 04:07:45] 2025-11-27 09:07:05,928 | INFO     | . initial setup = 9 s
[2025-11-27 04:07:45] 2025-11-27 09:07:05,928 | INFO     | . payload setup = 68 s
[2025-11-27 04:07:45] 2025-11-27 09:07:05,928 | INFO     | . stage-in = 0 s
[2025-11-27 04:07:45] 2025-11-27 09:07:05,928 | INFO     | . payload execution = 100668 s
[2025-11-27 04:07:45] 2025-11-27 09:07:05,928 | INFO     | . stage-out = 3 s
[2025-11-27 04:07:45] 2025-11-27 09:07:05,928 | INFO     | . log creation = 1 s
[2025-11-27 04:07:45] 2025-11-27 09:07:05,928 | INFO     | ..............................
[2025-11-27 04:07:45] 2025-11-27 09:07:06,150 | INFO     | time since job start (100842s) is within the limit (172800.0s)
[2025-11-27 04:07:45] 2025-11-27 09:07:06,300 | INFO     | 
[2025-11-27 04:07:45] 2025-11-27 09:07:06,300 | INFO     | job summary report
[2025-11-27 04:07:45] 2025-11-27 09:07:06,300 | INFO     | --------------------------------------------------
[2025-11-27 04:07:45] 2025-11-27 09:07:06,301 | INFO     | PanDA job id: 6897507581
[2025-11-27 04:07:45] 2025-11-27 09:07:06,301 | INFO     | task id: 47556161
[2025-11-27 04:07:45] 2025-11-27 09:07:06,301 | INFO     | errors: (none)
[2025-11-27 04:07:45] 2025-11-27 09:07:06,301 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 04:07:45] 2025-11-27 09:07:06,301 | INFO     | pilot state: finished 
[2025-11-27 04:07:45] 2025-11-27 09:07:06,301 | INFO     | transexitcode: 0
[2025-11-27 04:07:45] 2025-11-27 09:07:06,301 | INFO     | exeerrorcode: 0
[2025-11-27 04:07:45] 2025-11-27 09:07:06,301 | INFO     | exeerrordiag: 
[2025-11-27 04:07:45] 2025-11-27 09:07:06,301 | INFO     | exitcode: 0
[2025-11-27 04:07:45] 2025-11-27 09:07:06,301 | INFO     | exitmsg: OK
[2025-11-27 04:07:45] 2025-11-27 09:07:06,301 | INFO     | cpuconsumptiontime: 197476 s
[2025-11-27 04:07:45] 2025-11-27 09:07:06,301 | INFO     | nevents: 1000
[2025-11-27 04:07:45] 2025-11-27 09:07:06,301 | INFO     | neventsw: 0
[2025-11-27 04:07:45] 2025-11-27 09:07:06,301 | INFO     | pid: 3445556
[2025-11-27 04:07:45] 2025-11-27 09:07:06,301 | INFO     | pgrp: 3445556
[2025-11-27 04:07:45] 2025-11-27 09:07:06,302 | INFO     | corecount: 9
[2025-11-27 04:07:45] 2025-11-27 09:07:06,302 | INFO     | event service: False
[2025-11-27 04:07:45] 2025-11-27 09:07:06,302 | INFO     | sizes: {0: 2283437, 1: 2284122, 2: 2284122, 3: 2284349, 14: 2284349, 25: 2284377, 36: 2284533, 46: 2284823, 47: 2284851, 100739: 2345139, 100740: 2345138, 100744: 
[2025-11-27 04:07:45] 2025-11-27 09:07:06,302 | INFO     | --------------------------------------------------
[2025-11-27 04:07:45] 2025-11-27 09:07:06,302 | INFO     | 
[2025-11-27 04:07:45] 2025-11-27 09:07:06,302 | INFO     | executing command: ls -lF /tmp/boinchome/slots/9
[2025-11-27 04:07:45] 2025-11-27 09:07:06,323 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 04:07:45] 2025-11-27 09:07:06,323 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 04:07:45] 2025-11-27 09:07:06,324 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 04:07:45] 2025-11-27 09:07:06,324 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 04:07:45] 2025-11-27 09:07:06,324 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 04:07:45] 2025-11-27 09:07:06,324 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 04:07:45] 2025-11-27 09:07:06,324 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 04:07:45] 2025-11-27 09:07:06,324 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 04:07:45] 2025-11-27 09:07:06,324 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 04:07:45] 2025-11-27 09:07:06,324 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 04:07:45] 2025-11-27 09:07:06,324 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 04:07:45] 2025-11-27 09:07:06,324 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 04:07:45] 2025-11-27 09:07:06,324 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 04:07:45] 2025-11-27 09:07:06,324 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 04:07:45] 2025-11-27 09:07:06,325 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 04:07:45] 2025-11-27 09:07:06,325 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 04:07:45] 2025-11-27 09:07:06,325 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 04:07:45] 2025-11-27 09:07:06,325 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 04:07:45] 2025-11-27 09:07:06,325 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 04:07:45] 2025-11-27 09:07:06,325 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 04:07:45] 2025-11-27 09:07:06,325 | INFO     | job 6897507581 has completed (purged errors)
[2025-11-27 04:07:45] 2025-11-27 09:07:06,325 | INFO     | overall cleanup function is called
[2025-11-27 04:07:45] 2025-11-27 09:07:07,346 | INFO     | --- collectZombieJob: --- 10, [3445556]
[2025-11-27 04:07:45] 2025-11-27 09:07:07,347 | INFO     | zombie collector waiting for pid 3445556
[2025-11-27 04:07:45] 2025-11-27 09:07:07,347 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 04:07:45] 2025-11-27 09:07:07,347 | INFO     | collected zombie processes
[2025-11-27 04:07:45] 2025-11-27 09:07:07,347 | INFO     | will attempt to kill all subprocesses of pid=3445556
[2025-11-27 04:07:45] 2025-11-27 09:07:08,587 | INFO     | process IDs to be killed: [3445556] (in reverse order)
[2025-11-27 04:07:45] 2025-11-27 09:07:08,963 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 04:07:45] 2025-11-27 09:07:08,964 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 04:07:45] 2025-11-27 09:07:08,983 | INFO     | did not find any defunct processes belonging to 3445556
[2025-11-27 04:07:45] 2025-11-27 09:07:08,999 | INFO     | did not find any defunct processes belonging to 3445556
[2025-11-27 04:07:45] 2025-11-27 09:07:09,000 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 04:07:45] 2025-11-27 09:07:09,001 | INFO     | ready for new job
[2025-11-27 04:07:45] 2025-11-27 09:07:09,001 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 04:07:45] 2025-11-27 09:07:09,007 | INFO     | ***************************************
[2025-11-27 04:07:45] 2025-11-27 09:07:09,007 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 04:07:45] 2025-11-27 09:07:09,007 | INFO     | ***************************************
[2025-11-27 04:07:45] 2025-11-27 09:07:09,007 | INFO     | 
[2025-11-27 04:07:45] 2025-11-27 09:07:09,012 | INFO     | architecture information:
[2025-11-27 04:07:45] 2025-11-27 09:07:09,012 | INFO     | executing command: cat /etc/os-release
[2025-11-27 04:07:45] 2025-11-27 09:07:09,034 | INFO     | cat /etc/os-release:
[2025-11-27 04:07:45] NAME="CentOS Linux"
[2025-11-27 04:07:45] VERSION="7 (Core)"
[2025-11-27 04:07:45] ID="centos"
[2025-11-27 04:07:45] ID_LIKE="rhel fedora"
[2025-11-27 04:07:45] VERSION_ID="7"
[2025-11-27 04:07:45] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 04:07:45] ANSI_COLOR="0;31"
[2025-11-27 04:07:45] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 04:07:45] HOME_URL="https://www.centos.org/"
[2025-11-27 04:07:45] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 04:07:45] 
[2025-11-27 04:07:45] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 04:07:45] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 04:07:45] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 04:07:45] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 04:07:45] 
[2025-11-27 04:07:45] 2025-11-27 09:07:09,035 | INFO     | ***************************************
[2025-11-27 04:07:45] 2025-11-27 09:07:09,538 | INFO     | executing command: df -mP /tmp/boinchome/slots/9
[2025-11-27 04:07:45] 2025-11-27 09:07:09,571 | INFO     | sufficient remaining disk space (64517832704 B)
[2025-11-27 04:07:45] 2025-11-27 09:07:09,572 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 04:07:45] 2025-11-27 09:07:09,572 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 04:07:45] 2025-11-27 09:07:09,572 | INFO     | update_server=False
[2025-11-27 04:07:45] 2025-11-27 09:07:09,572 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 04:07:45] 2025-11-27 09:07:09,732 | INFO     | all payload control threads have been joined
[2025-11-27 04:07:45] 2025-11-27 09:07:09,823 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 04:07:45] 2025-11-27 09:07:09,825 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 04:07:45] 2025-11-27 09:07:10,132 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 04:07:45] 2025-11-27 09:07:10,132 | INFO     | aborting loop
[2025-11-27 04:07:45] 2025-11-27 09:07:10,316 | INFO     | all data control threads have been joined
[2025-11-27 04:07:45] 2025-11-27 09:07:10,577 | INFO     | [job] retrieve thread has finished
[2025-11-27 04:07:45] 2025-11-27 09:07:10,738 | INFO     | [payload] control thread has finished
[2025-11-27 04:07:45] 2025-11-27 09:07:10,786 | INFO     | [payload] failed_post thread has finished
[2025-11-27 04:07:45] 2025-11-27 09:07:10,927 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 04:07:45] 2025-11-27 09:07:11,027 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 04:07:45] 2025-11-27 09:07:11,138 | INFO     | [job] job monitor thread has finished
[2025-11-27 04:07:45] 2025-11-27 09:07:11,197 | INFO     | all job control threads have been joined
[2025-11-27 04:07:45] 2025-11-27 09:07:11,289 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 04:07:45] 2025-11-27 09:07:11,322 | INFO     | [data] control thread has finished
[2025-11-27 04:07:45] 2025-11-27 09:07:11,360 | INFO     | [payload] validate_post thread has finished
[2025-11-27 04:07:45] 2025-11-27 09:07:11,371 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 04:07:45] 2025-11-27 09:07:11,387 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 04:07:45] 2025-11-27 09:07:11,709 | INFO     | [data] copytool_in thread has finished
[2025-11-27 04:07:45] 2025-11-27 09:07:11,803 | INFO     | [job] validate thread has finished
[2025-11-27 04:07:45] 2025-11-27 09:07:11,834 | INFO     | [data] copytool_out thread has finished
[2025-11-27 04:07:45] 2025-11-27 09:07:12,033 | INFO     | [job] queue monitor thread has finished
[2025-11-27 04:07:45] 2025-11-27 09:07:12,211 | INFO     | [job] control thread has finished
[2025-11-27 04:07:45] 2025-11-27 09:07:13,832 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 04:07:45] 2025-11-27 09:07:39,021 | INFO     | [monitor] cgroup control has ended
[2025-11-27 04:07:45] 2025-11-27 09:07:39,823 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140420956198720)>', '<ExcThread(monitor, started 140420466079488)>']
[2025-11-27 04:07:45] 2025-11-27 09:07:39,898 | INFO     | PID=3425951 has CPU usage=5.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 04:07:45] 2025-11-27 09:07:39,898 | INFO     | .. there are 21 such processes running
[2025-11-27 04:07:45] 2025-11-27 09:07:39,898 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 04:07:45] 2025-11-27 09:07:39,898 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 04:07:45] 2025-11-27 09:07:39,898 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 04:07:45] 2025-11-27 09:07:39,898 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 04:07:45] 2025-11-27 09:07:39,898 | INFO     | [monitor] control thread has ended
[2025-11-27 04:07:45] 2025-11-27 09:07:44,850 | INFO     | all workflow threads have been joined
[2025-11-27 04:07:45] 2025-11-27 09:07:44,850 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 04:07:45] 2025-11-27 09:07:44,854 | INFO     | traces error code: 0
[2025-11-27 04:07:45] 2025-11-27 09:07:44,854 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 04:07:45] 2025-11-27 09:07:45,062 [wrapper] ==== pilot stdout END ====
[2025-11-27 04:07:45] 2025-11-27 09:07:45,066 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 04:07:45] 2025-11-27 09:07:45,069 [wrapper] pilotpid: 3425951
[2025-11-27 04:07:45] 2025-11-27 09:07:45,071 [wrapper] Pilot exit status: 0
[2025-11-27 04:07:45] 2025-11-27 09:07:45,093 [wrapper] pandaids: 6897507581
[2025-11-27 04:07:45] 2025-11-27 09:07:45,210 [wrapper] cleanup supervisor_pilot  162505 3425952
[2025-11-27 04:07:45] 2025-11-27 09:07:45,214 [wrapper] Test setup, not cleaning
[2025-11-27 04:07:45] 2025-11-27 09:07:45,225 [wrapper] apfmon messages muted
[2025-11-27 04:07:45] 2025-11-27 09:07:45,228 [wrapper] ==== wrapper stdout END ====
[2025-11-27 04:07:45] 2025-11-27 09:07:45,230 [wrapper] ==== wrapper stderr END ====
[2025-11-27 04:07:45]  *** Error codes and diagnostics ***
[2025-11-27 04:07:45]     "exeErrorCode": 0,
[2025-11-27 04:07:45]     "exeErrorDiag": "",
[2025-11-27 04:07:45]     "pilotErrorCode": 0,
[2025-11-27 04:07:45]     "pilotErrorDiag": "",
[2025-11-27 04:07:45]  *** Listing of results directory ***
[2025-11-27 04:07:45] total 1326556
[2025-11-27 04:07:45] -rw-r--r--. 1 boincer umatlas    576529 Nov 25 11:48 pilot3.tar.gz
[2025-11-27 04:07:45] -rwx------. 1 boincer umatlas     36292 Nov 25 12:01 runpilot2-wrapper.sh
[2025-11-27 04:07:45] -rw-r--r--. 1 boincer umatlas      5112 Nov 25 12:02 queuedata.json
[2025-11-27 04:07:45] -rw-r--r--. 1 boincer umatlas       100 Nov 26 00:04 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 04:07:45] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 26 00:04 run_atlas
[2025-11-27 04:07:45] -rw-r--r--. 1 boincer umatlas       105 Nov 26 00:04 job.xml
[2025-11-27 04:07:45] -rw-r--r--. 2 boincer umatlas 410696960 Nov 26 00:04 EVNT.47483658._002277.pool.root.1
[2025-11-27 04:07:45] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 00:04 start_atlas.sh
[2025-11-27 04:07:45] drwxrwx--x. 2 boincer umatlas      4096 Nov 26 00:04 shared
[2025-11-27 04:07:45] -rw-r--r--. 2 boincer umatlas    590110 Nov 26 00:04 input.tar.gz
[2025-11-27 04:07:45] -rw-r--r--. 1 boincer umatlas         0 Nov 26 00:04 boinc_lockfile
[2025-11-27 04:07:45] -rw-r--r--. 1 boincer umatlas      2786 Nov 26 00:04 pandaJob.out
[2025-11-27 04:07:45] -rw-------. 1 boincer umatlas        57 Nov 26 00:04 setup.sh.local
[2025-11-27 04:07:45] -rw-------. 1 boincer umatlas    991877 Nov 26 00:06 agis_schedconf.cvmfs.json
[2025-11-27 04:07:45] drwx------. 5 boincer umatlas      4096 Nov 26 00:06 pilot3
[2025-11-27 04:07:45] -rw-r--r--. 1 boincer umatlas       533 Nov 27 03:25 boinc_task_state.xml
[2025-11-27 04:07:45] -rw-r--r--. 1 boincer umatlas      6946 Nov 27 04:00 init_data.xml
[2025-11-27 04:07:45] -rw-------. 1 boincer umatlas 920234206 Nov 27 04:06 HITS.47556161._002609.pool.root.1
[2025-11-27 04:07:45] -rw-------. 1 boincer umatlas      1075 Nov 27 04:06 memory_monitor_summary.json
[2025-11-27 04:07:45] -rw-------. 1 boincer umatlas   1516240 Nov 27 04:06 agis_ddmendpoints.agis.ALL.json
[2025-11-27 04:07:45] -rw-------. 1 boincer umatlas   2413923 Nov 27 04:06 log.47556161._002609.job.log.tgz.1
[2025-11-27 04:07:45] -rw-------. 1 boincer umatlas        98 Nov 27 04:06 pilot_heartbeat.json
[2025-11-27 04:07:45] -rw-------. 1 boincer umatlas      8640 Nov 27 04:07 heartbeat.json
[2025-11-27 04:07:45] -rw-r--r--. 1 boincer umatlas        29 Nov 27 04:07 wrapper_checkpoint.txt
[2025-11-27 04:07:45] -rw-r--r--. 1 boincer umatlas      8192 Nov 27 04:07 boinc_mmap_file
[2025-11-27 04:07:45] -rw-------. 1 boincer umatlas      4824 Nov 27 04:07 pilotlog.txt
[2025-11-27 04:07:45] -rw-------. 1 boincer umatlas   9358270 Nov 27 04:07 log.47556161._002609.job.log.1
[2025-11-27 04:07:45] -rw-------. 1 boincer umatlas       353 Nov 27 04:07 output.list
[2025-11-27 04:07:45] -rw-r--r--. 1 boincer umatlas       620 Nov 27 04:07 runtime_log
[2025-11-27 04:07:45] -rw-------. 1 boincer umatlas  11796480 Nov 27 04:07 result.tar.gz
[2025-11-27 04:07:45] -rw-------. 1 boincer umatlas       669 Nov 27 04:07 zQAODm5aBi8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmpfJKDm02fcHo.diag
[2025-11-27 04:07:45] -rw-r--r--. 1 boincer umatlas      9339 Nov 27 04:07 runtime_log.err
[2025-11-27 04:07:45] -rw-r--r--. 1 boincer umatlas     16384 Nov 27 04:07 stderr.txt
[2025-11-27 04:07:45] HITS file was successfully produced:
[2025-11-27 04:07:45] -rw-------. 1 boincer umatlas 920234206 Nov 27 04:06 shared/HITS.pool.root.1
[2025-11-27 04:07:45]  *** Contents of shared directory: ***
[2025-11-27 04:07:45] total 1311864
[2025-11-27 04:07:45] -rw-r--r--. 2 boincer umatlas 410696960 Nov 26 00:04 ATLAS.root_0
[2025-11-27 04:07:45] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 00:04 start_atlas.sh
[2025-11-27 04:07:45] -rw-r--r--. 2 boincer umatlas    590110 Nov 26 00:04 input.tar.gz
[2025-11-27 04:07:45] -rw-------. 1 boincer umatlas 920234206 Nov 27 04:06 HITS.pool.root.1
[2025-11-27 04:07:45] -rw-------. 1 boincer umatlas  11796480 Nov 27 04:07 result.tar.gz
04:07:47 (3417548): run_atlas exited; CPU time 198528.460744
04:07:47 (3417548): called boinc_finish(0)

</stderr_txt>
]]>

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