Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
22:27:50 (3453553): wrapper (7.7.26015): starting
22:27:50 (3453553): wrapper: running run_atlas (--nthreads 9)
[2025-11-25 22:27:50] Arguments: --nthreads 9
[2025-11-25 22:27:50] Threads: 9
[2025-11-25 22:27:50] Checking for CVMFS
[2025-11-25 22:27:51] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 22:27:51] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 22:27:51] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 22:27:52] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 22:27:52] 2.13.3.0 16090 29461 430576 153307 3 623 21836524 32935936 58508 16776704 0 414087972 99.629 374168522 52839 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-25 22:27:52] CVMFS is ok
[2025-11-25 22:27:52] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 22:27:52] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 22:27:52] Further information can be found at the LHC@home message board.
[2025-11-25 22:27:52] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 22:27:52] Checking for apptainer binary...
[2025-11-25 22:27:52] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 22:27:52] Running /usr/bin/apptainer --version
[2025-11-25 22:27:52] apptainer version 1.4.4-1.el9
[2025-11-25 22:27:52] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 22:27:53] c7-9-15.aglt2.org
[2025-11-25 22:27:53] apptainer works
[2025-11-25 22:27:53] Set ATHENA_PROC_NUMBER=9
[2025-11-25 22:27:53] Set ATHENA_CORE_NUMBER=9
[2025-11-25 22:27:53] Starting ATLAS job with PandaID=6897488892
[2025-11-25 22:27:53] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 06:07:31]  *** The last 200 lines of the pilot log: ***
[2025-11-26 06:07:31] 2025-11-26 11:06:27,783 | INFO     | monitor loop #1625: job 0:6897488892 is in state 'finished'
[2025-11-26 06:07:31] 2025-11-26 11:06:27,784 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 06:07:31] 2025-11-26 11:06:29,302 | INFO     | time since job start (27474s) is within the limit (172800.0s)
[2025-11-26 06:07:31] 2025-11-26 11:06:30,291 | INFO     | monitor loop #1626: job 0:6897488892 is in state 'finished'
[2025-11-26 06:07:31] 2025-11-26 11:06:30,292 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 06:07:31] 2025-11-26 11:06:31,311 | INFO     | time since job start (27476s) is within the limit (172800.0s)
[2025-11-26 06:07:31] 2025-11-26 11:06:32,806 | INFO     | monitor loop #1627: job 0:6897488892 is in state 'finished'
[2025-11-26 06:07:31] 2025-11-26 11:06:32,806 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 06:07:31] 2025-11-26 11:06:33,396 | INFO     | PID=3461565 has CPU usage=14.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-11-26 06:07:31] 2025-11-26 11:06:33,396 | INFO     | .. there are 93 such processes running
[2025-11-26 06:07:31] 2025-11-26 11:06:34,396 | INFO     | time since job start (27479s) is within the limit (172800.0s)
[2025-11-26 06:07:31] 2025-11-26 11:06:35,312 | INFO     | monitor loop #1628: job 0:6897488892 is in state 'finished'
[2025-11-26 06:07:31] 2025-11-26 11:06:35,312 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 06:07:31] 2025-11-26 11:06:36,404 | INFO     | time since job start (27481s) is within the limit (172800.0s)
[2025-11-26 06:07:31] 2025-11-26 11:06:37,819 | INFO     | monitor loop #1629: job 0:6897488892 is in state 'finished'
[2025-11-26 06:07:31] 2025-11-26 11:06:37,819 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 06:07:31] 2025-11-26 11:06:38,081 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-26 06:07:31] 2025-11-26 11:06:38,087 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3800.235546875
[2025-11-26 06:07:31] 2025-11-26 11:06:38,103 | INFO     | using path: /tmp/boinchome/slots/3/PanDA_Pilot-6897488892/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 06:07:31] 2025-11-26 11:06:38,103 | INFO     | extracted standard info from prmon json
[2025-11-26 06:07:31] 2025-11-26 11:06:38,104 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 06:07:31] 2025-11-26 11:06:38,104 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 06:07:31] 2025-11-26 11:06:38,108 | INFO     | fitting pss+swap vs Time
[2025-11-26 06:07:31] 2025-11-26 11:06:38,108 | INFO     | sum of square deviations: 28069516119.24728
[2025-11-26 06:07:31] 2025-11-26 11:06:38,111 | INFO     | sum of deviations: -233436022357.21375
[2025-11-26 06:07:31] 2025-11-26 11:06:38,111 | INFO     | mean x: 1764141468.1314032
[2025-11-26 06:07:31] 2025-11-26 11:06:38,111 | INFO     | mean y: 2933073.2917594654
[2025-11-26 06:07:31] 2025-11-26 11:06:38,111 | INFO     | intersect: 14674157381.060604
[2025-11-26 06:07:31] 2025-11-26 11:06:38,111 | INFO     | chi2: 19.555455834833378
[2025-11-26 06:07:31] 2025-11-26 11:06:38,112 | INFO     | sum of square deviations: 27142516176.277027
[2025-11-26 06:07:31] 2025-11-26 11:06:38,114 | INFO     | sum of deviations: -93323844379.11504
[2025-11-26 06:07:31] 2025-11-26 11:06:38,114 | INFO     | mean x: 1764141315.6554055
[2025-11-26 06:07:31] 2025-11-26 11:06:38,114 | INFO     | mean y: 2956120.777027027
[2025-11-26 06:07:31] 2025-11-26 11:06:38,114 | INFO     | intersect: 6068585723.270811
[2025-11-26 06:07:31] 2025-11-26 11:06:38,115 | INFO     | chi2: 16.456317131126884
[2025-11-26 06:07:31] 2025-11-26 11:06:38,115 | INFO     | current chi2=16.456317131126884 (change=15.847949185547073 %)
[2025-11-26 06:07:31] 2025-11-26 11:06:38,115 | INFO     | right removable region: 443
[2025-11-26 06:07:31] 2025-11-26 11:06:38,115 | INFO     | sum of square deviations: 27141986700.889645
[2025-11-26 06:07:31] 2025-11-26 11:06:38,118 | INFO     | sum of deviations: -374347359557.2704
[2025-11-26 06:07:31] 2025-11-26 11:06:38,118 | INFO     | mean x: 1764141620.6509008
[2025-11-26 06:07:31] 2025-11-26 11:06:38,118 | INFO     | mean y: 2956189.6756756757
[2025-11-26 06:07:31] 2025-11-26 11:06:38,118 | INFO     | intersect: 24334327538.925587
[2025-11-26 06:07:31] 2025-11-26 11:06:38,118 | INFO     | chi2: 16.9232384296048
[2025-11-26 06:07:31] 2025-11-26 11:06:38,118 | INFO     | current chi2=16.9232384296048 (change=13.460271279076553 %)
[2025-11-26 06:07:31] 2025-11-26 11:06:38,118 | INFO     | left removable region: 10
[2025-11-26 06:07:31] 2025-11-26 11:06:38,119 | INFO     | sum of square deviations: 25174422505.519596
[2025-11-26 06:07:31] 2025-11-26 11:06:38,121 | INFO     | sum of deviations: -231992358351.2656
[2025-11-26 06:07:31] 2025-11-26 11:06:38,121 | INFO     | mean x: 1764141590.2009237
[2025-11-26 06:07:31] 2025-11-26 11:06:38,121 | INFO     | mean y: 2989380.1639722865
[2025-11-26 06:07:31] 2025-11-26 11:06:38,121 | INFO     | intersect: 16260258752.93829
[2025-11-26 06:07:31] 2025-11-26 11:06:38,122 | INFO     | chi2: 13.065138389679854
[2025-11-26 06:07:31] 2025-11-26 11:06:38,122 | INFO     | current memory leak: -9.22 B/s (using 433 data points, chi2=13.07)
[2025-11-26 06:07:31] 2025-11-26 11:06:38,122 | INFO     | could have reported an average CPU frequency of 3800 MHz (18 samples)
[2025-11-26 06:07:31] 2025-11-26 11:06:38,122 | INFO     | ..............................
[2025-11-26 06:07:31] 2025-11-26 11:06:38,122 | INFO     | . Timing measurements:
[2025-11-26 06:07:31] 2025-11-26 11:06:38,122 | INFO     | . get job = 0 s
[2025-11-26 06:07:31] 2025-11-26 11:06:38,122 | INFO     | . initial setup = 3 s
[2025-11-26 06:07:31] 2025-11-26 11:06:38,122 | INFO     | . payload setup = 28 s
[2025-11-26 06:07:31] 2025-11-26 11:06:38,122 | INFO     | . stage-in = 0 s
[2025-11-26 06:07:31] 2025-11-26 11:06:38,122 | INFO     | . payload execution = 27389 s
[2025-11-26 06:07:31] 2025-11-26 11:06:38,122 | INFO     | . stage-out = 4 s
[2025-11-26 06:07:31] 2025-11-26 11:06:38,122 | INFO     | . log creation = 1 s
[2025-11-26 06:07:31] 2025-11-26 11:06:38,122 | INFO     | ..............................
[2025-11-26 06:07:31] 2025-11-26 11:06:38,253 | INFO     | 
[2025-11-26 06:07:31] 2025-11-26 11:06:38,253 | INFO     | job summary report
[2025-11-26 06:07:31] 2025-11-26 11:06:38,253 | INFO     | --------------------------------------------------
[2025-11-26 06:07:31] 2025-11-26 11:06:38,254 | INFO     | PanDA job id: 6897488892
[2025-11-26 06:07:31] 2025-11-26 11:06:38,254 | INFO     | task id: 47556161
[2025-11-26 06:07:31] 2025-11-26 11:06:38,254 | INFO     | errors: (none)
[2025-11-26 06:07:31] 2025-11-26 11:06:38,254 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 06:07:31] 2025-11-26 11:06:38,254 | INFO     | pilot state: finished 
[2025-11-26 06:07:31] 2025-11-26 11:06:38,254 | INFO     | transexitcode: 0
[2025-11-26 06:07:31] 2025-11-26 11:06:38,254 | INFO     | exeerrorcode: 0
[2025-11-26 06:07:31] 2025-11-26 11:06:38,254 | INFO     | exeerrordiag: 
[2025-11-26 06:07:31] 2025-11-26 11:06:38,254 | INFO     | exitcode: 0
[2025-11-26 06:07:31] 2025-11-26 11:06:38,254 | INFO     | exitmsg: OK
[2025-11-26 06:07:31] 2025-11-26 11:06:38,254 | INFO     | cpuconsumptiontime: 135854 s
[2025-11-26 06:07:31] 2025-11-26 11:06:38,254 | INFO     | nevents: 1000
[2025-11-26 06:07:31] 2025-11-26 11:06:38,254 | INFO     | neventsw: 0
[2025-11-26 06:07:31] 2025-11-26 11:06:38,254 | INFO     | pid: 3493776
[2025-11-26 06:07:31] 2025-11-26 11:06:38,254 | INFO     | pgrp: 3493776
[2025-11-26 06:07:31] 2025-11-26 11:06:38,254 | INFO     | corecount: 9
[2025-11-26 06:07:31] 2025-11-26 11:06:38,254 | INFO     | event service: False
[2025-11-26 06:07:31] 2025-11-26 11:06:38,254 | INFO     | sizes: {0: 2284265, 1: 2284265, 11: 2284293, 19: 2284583, 22: 2284611, 27419: 2322089, 27424: 2331083, 27426: 2331139, 27443: 2331385}
[2025-11-26 06:07:31] 2025-11-26 11:06:38,254 | INFO     | --------------------------------------------------
[2025-11-26 06:07:31] 2025-11-26 11:06:38,254 | INFO     | 
[2025-11-26 06:07:31] 2025-11-26 11:06:38,254 | INFO     | executing command: ls -lF /tmp/boinchome/slots/3
[2025-11-26 06:07:31] 2025-11-26 11:06:38,405 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 06:07:31] 2025-11-26 11:06:38,406 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 06:07:31] 2025-11-26 11:06:38,406 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 06:07:31] 2025-11-26 11:06:38,406 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 06:07:31] 2025-11-26 11:06:38,406 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 06:07:31] 2025-11-26 11:06:38,406 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 06:07:31] 2025-11-26 11:06:38,406 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 06:07:31] 2025-11-26 11:06:38,406 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 06:07:31] 2025-11-26 11:06:38,406 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 06:07:31] 2025-11-26 11:06:38,406 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 06:07:31] 2025-11-26 11:06:38,406 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 06:07:31] 2025-11-26 11:06:38,406 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 06:07:31] 2025-11-26 11:06:38,406 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 06:07:31] 2025-11-26 11:06:38,406 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 06:07:31] 2025-11-26 11:06:38,406 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 06:07:31] 2025-11-26 11:06:38,406 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 06:07:31] 2025-11-26 11:06:38,406 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 06:07:31] 2025-11-26 11:06:38,406 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 06:07:31] 2025-11-26 11:06:38,406 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 06:07:31] 2025-11-26 11:06:38,407 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 06:07:31] 2025-11-26 11:06:38,407 | INFO     | job 6897488892 has completed (purged errors)
[2025-11-26 06:07:31] 2025-11-26 11:06:38,407 | INFO     | overall cleanup function is called
[2025-11-26 06:07:31] 2025-11-26 11:06:39,434 | INFO     | --- collectZombieJob: --- 10, [3493776]
[2025-11-26 06:07:31] 2025-11-26 11:06:39,438 | INFO     | zombie collector waiting for pid 3493776
[2025-11-26 06:07:31] 2025-11-26 11:06:39,438 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 06:07:31] 2025-11-26 11:06:39,438 | INFO     | collected zombie processes
[2025-11-26 06:07:31] 2025-11-26 11:06:39,438 | INFO     | will attempt to kill all subprocesses of pid=3493776
[2025-11-26 06:07:31] 2025-11-26 11:06:40,017 | INFO     | process IDs to be killed: [3493776] (in reverse order)
[2025-11-26 06:07:31] 2025-11-26 11:06:40,252 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 06:07:31] 2025-11-26 11:06:40,253 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 06:07:31] 2025-11-26 11:06:40,285 | INFO     | did not find any defunct processes belonging to 3493776
[2025-11-26 06:07:31] 2025-11-26 11:06:40,313 | INFO     | did not find any defunct processes belonging to 3493776
[2025-11-26 06:07:31] 2025-11-26 11:06:40,314 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 06:07:31] 2025-11-26 11:06:40,314 | INFO     | ready for new job
[2025-11-26 06:07:31] 2025-11-26 11:06:40,314 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 06:07:31] 2025-11-26 11:06:40,316 | INFO     | ***************************************
[2025-11-26 06:07:31] 2025-11-26 11:06:40,316 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 06:07:31] 2025-11-26 11:06:40,316 | INFO     | ***************************************
[2025-11-26 06:07:31] 2025-11-26 11:06:40,316 | INFO     | 
[2025-11-26 06:07:31] 2025-11-26 11:06:40,321 | INFO     | architecture information:
[2025-11-26 06:07:31] 2025-11-26 11:06:40,321 | INFO     | executing command: cat /etc/os-release
[2025-11-26 06:07:31] 2025-11-26 11:06:40,353 | INFO     | cat /etc/os-release:
[2025-11-26 06:07:31] NAME="CentOS Linux"
[2025-11-26 06:07:31] VERSION="7 (Core)"
[2025-11-26 06:07:31] ID="centos"
[2025-11-26 06:07:31] ID_LIKE="rhel fedora"
[2025-11-26 06:07:31] VERSION_ID="7"
[2025-11-26 06:07:31] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 06:07:31] ANSI_COLOR="0;31"
[2025-11-26 06:07:31] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 06:07:31] HOME_URL="https://www.centos.org/"
[2025-11-26 06:07:31] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 06:07:31] 
[2025-11-26 06:07:31] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 06:07:31] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 06:07:31] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 06:07:31] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 06:07:31] 
[2025-11-26 06:07:31] 2025-11-26 11:06:40,353 | INFO     | ***************************************
[2025-11-26 06:07:31] 2025-11-26 11:06:40,856 | INFO     | executing command: df -mP /tmp/boinchome/slots/3
[2025-11-26 06:07:31] 2025-11-26 11:06:40,887 | INFO     | sufficient remaining disk space (59056848896 B)
[2025-11-26 06:07:31] 2025-11-26 11:06:40,888 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 06:07:31] 2025-11-26 11:06:40,888 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 06:07:31] 2025-11-26 11:06:40,888 | INFO     | update_server=False
[2025-11-26 06:07:31] 2025-11-26 11:06:40,888 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 06:07:31] 2025-11-26 11:06:40,888 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 06:07:31] 2025-11-26 11:06:40,968 | INFO     | all data control threads have been joined
[2025-11-26 06:07:31] 2025-11-26 11:06:41,261 | INFO     | all job control threads have been joined
[2025-11-26 06:07:31] 2025-11-26 11:06:41,330 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 06:07:31] 2025-11-26 11:06:41,331 | INFO     | aborting loop
[2025-11-26 06:07:31] 2025-11-26 11:06:41,856 | INFO     | all payload control threads have been joined
[2025-11-26 06:07:31] 2025-11-26 11:06:41,893 | INFO     | [job] retrieve thread has finished
[2025-11-26 06:07:31] 2025-11-26 11:06:41,894 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 06:07:31] 2025-11-26 11:06:41,974 | INFO     | [data] control thread has finished
[2025-11-26 06:07:31] 2025-11-26 11:06:42,223 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 06:07:31] 2025-11-26 11:06:42,235 | INFO     | [payload] failed_post thread has finished
[2025-11-26 06:07:31] 2025-11-26 11:06:42,266 | INFO     | [job] control thread has finished
[2025-11-26 06:07:31] 2025-11-26 11:06:42,336 | INFO     | [job] job monitor thread has finished
[2025-11-26 06:07:31] 2025-11-26 11:06:42,610 | INFO     | [data] copytool_in thread has finished
[2025-11-26 06:07:31] 2025-11-26 11:06:42,661 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 06:07:31] 2025-11-26 11:06:42,712 | INFO     | [payload] validate_post thread has finished
[2025-11-26 06:07:31] 2025-11-26 11:06:42,863 | INFO     | [payload] control thread has finished
[2025-11-26 06:07:31] 2025-11-26 11:06:43,184 | INFO     | [job] validate thread has finished
[2025-11-26 06:07:31] 2025-11-26 11:06:43,188 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 06:07:31] 2025-11-26 11:06:43,228 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 06:07:31] 2025-11-26 11:06:43,293 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 06:07:31] 2025-11-26 11:06:43,900 | INFO     | [data] copytool_out thread has finished
[2025-11-26 06:07:31] 2025-11-26 11:06:44,234 | INFO     | [job] queue monitor thread has finished
[2025-11-26 06:07:31] 2025-11-26 11:06:44,896 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 06:07:31] 2025-11-26 11:07:08,438 | INFO     | 27486s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-11-26 06:07:31] 2025-11-26 11:07:10,187 | INFO     | PID=3461565 has CPU usage=3.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-26 06:07:31] 2025-11-26 11:07:10,187 | INFO     | .. there are 93 such processes running
[2025-11-26 06:07:31] 2025-11-26 11:07:10,188 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 06:07:31] 2025-11-26 11:07:10,188 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 06:07:31] 2025-11-26 11:07:10,188 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 06:07:31] 2025-11-26 11:07:23,393 | INFO     | [monitor] cgroup control has ended
[2025-11-26 06:07:31] 2025-11-26 11:07:25,261 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140224903247680)>', '<ExcThread(monitor, started 140224415909632)>']
[2025-11-26 06:07:31] 2025-11-26 11:07:25,301 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 06:07:31] 2025-11-26 11:07:25,301 | INFO     | [monitor] control thread has ended
[2025-11-26 06:07:31] 2025-11-26 11:07:30,287 | INFO     | all workflow threads have been joined
[2025-11-26 06:07:31] 2025-11-26 11:07:30,287 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 06:07:31] 2025-11-26 11:07:30,288 | INFO     | traces error code: 0
[2025-11-26 06:07:31] 2025-11-26 11:07:30,288 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 06:07:31] 2025-11-26 11:07:30,458 [wrapper] ==== pilot stdout END ====
[2025-11-26 06:07:31] 2025-11-26 11:07:30,462 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 06:07:31] 2025-11-26 11:07:30,465 [wrapper] pilotpid: 3461565
[2025-11-26 06:07:31] 2025-11-26 11:07:30,467 [wrapper] Pilot exit status: 0
[2025-11-26 06:07:31] 2025-11-26 11:07:30,583 [wrapper] pandaids: 6897488892
[2025-11-26 06:07:31] 2025-11-26 11:07:30,910 [wrapper] cleanup supervisor_pilot 3116877 3461566
[2025-11-26 06:07:31] 2025-11-26 11:07:30,950 [wrapper] Test setup, not cleaning
[2025-11-26 06:07:31] 2025-11-26 11:07:30,975 [wrapper] apfmon messages muted
[2025-11-26 06:07:31] 2025-11-26 11:07:30,987 [wrapper] ==== wrapper stdout END ====
[2025-11-26 06:07:31] 2025-11-26 11:07:31,004 [wrapper] ==== wrapper stderr END ====
[2025-11-26 06:07:31]  *** Error codes and diagnostics ***
[2025-11-26 06:07:31]     "exeErrorCode": 0,
[2025-11-26 06:07:31]     "exeErrorDiag": "",
[2025-11-26 06:07:31]     "pilotErrorCode": 0,
[2025-11-26 06:07:31]     "pilotErrorDiag": "",
[2025-11-26 06:07:31]  *** Listing of results directory ***
[2025-11-26 06:07:31] total 1312496
[2025-11-26 06:07:31] -rw-r--r--. 1 boincer umatlas    576529 Nov 25 11:48 pilot3.tar.gz
[2025-11-26 06:07:31] -rwx------. 1 boincer umatlas     36292 Nov 25 12:01 runpilot2-wrapper.sh
[2025-11-26 06:07:31] -rw-r--r--. 1 boincer umatlas      5112 Nov 25 12:02 queuedata.json
[2025-11-26 06:07:31] -rw-r--r--. 1 boincer umatlas       100 Nov 25 22:27 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 06:07:31] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 25 22:27 run_atlas
[2025-11-26 06:07:31] -rw-r--r--. 1 boincer umatlas       105 Nov 25 22:27 job.xml
[2025-11-26 06:07:31] -rw-r--r--. 2 boincer umatlas 407603472 Nov 25 22:27 EVNT.47483658._002270.pool.root.1
[2025-11-26 06:07:31] drwxrwx--x. 2 boincer umatlas      4096 Nov 25 22:27 shared
[2025-11-26 06:07:31] -rw-r--r--. 2 boincer umatlas    590108 Nov 25 22:27 input.tar.gz
[2025-11-26 06:07:31] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 22:27 start_atlas.sh
[2025-11-26 06:07:31] -rw-r--r--. 1 boincer umatlas         0 Nov 25 22:27 boinc_lockfile
[2025-11-26 06:07:31] -rw-r--r--. 1 boincer umatlas      2786 Nov 25 22:27 pandaJob.out
[2025-11-26 06:07:31] -rw-------. 1 boincer umatlas        57 Nov 25 22:27 setup.sh.local
[2025-11-26 06:07:31] -rw-------. 1 boincer umatlas    991877 Nov 25 22:28 agis_schedconf.cvmfs.json
[2025-11-26 06:07:31] drwx------. 5 boincer umatlas      4096 Nov 25 22:28 pilot3
[2025-11-26 06:07:31] -rw-r--r--. 1 boincer umatlas       533 Nov 26 05:41 boinc_task_state.xml
[2025-11-26 06:07:31] -rw-r--r--. 1 boincer umatlas      7171 Nov 26 06:04 init_data.xml
[2025-11-26 06:07:31] -rw-------. 1 boincer umatlas 921875420 Nov 26 06:05 HITS.47556161._002535.pool.root.1
[2025-11-26 06:07:31] -rw-------. 1 boincer umatlas      1051 Nov 26 06:06 memory_monitor_summary.json
[2025-11-26 06:07:31] -rw-------. 1 boincer umatlas   1516240 Nov 26 06:06 agis_ddmendpoints.agis.ALL.json
[2025-11-26 06:07:31] -rw-------. 1 boincer umatlas   1823771 Nov 26 06:06 log.47556161._002535.job.log.tgz.1
[2025-11-26 06:07:31] -rw-------. 1 boincer umatlas      8583 Nov 26 06:06 heartbeat.json
[2025-11-26 06:07:31] -rw-------. 1 boincer umatlas        95 Nov 26 06:07 pilot_heartbeat.json
[2025-11-26 06:07:31] -rw-r--r--. 1 boincer umatlas      8192 Nov 26 06:07 boinc_mmap_file
[2025-11-26 06:07:31] -rw-r--r--. 1 boincer umatlas        29 Nov 26 06:07 wrapper_checkpoint.txt
[2025-11-26 06:07:31] -rw-------. 1 boincer umatlas      4940 Nov 26 06:07 pilotlog.txt
[2025-11-26 06:07:31] -rw-------. 1 boincer umatlas   3473217 Nov 26 06:07 log.47556161._002535.job.log.1
[2025-11-26 06:07:31] -rw-------. 1 boincer umatlas       353 Nov 26 06:07 output.list
[2025-11-26 06:07:31] -rw-r--r--. 1 boincer umatlas       620 Nov 26 06:07 runtime_log
[2025-11-26 06:07:31] -rw-------. 1 boincer umatlas   5314560 Nov 26 06:07 result.tar.gz
[2025-11-26 06:07:31] -rw-r--r--. 1 boincer umatlas      9338 Nov 26 06:07 runtime_log.err
[2025-11-26 06:07:31] -rw-------. 1 boincer umatlas       659 Nov 26 06:07 9K2LDm5aBi8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmkeJKDmOTXWum.diag
[2025-11-26 06:07:31] -rw-r--r--. 1 boincer umatlas     21884 Nov 26 06:07 stderr.txt
[2025-11-26 06:07:31] HITS file was successfully produced:
[2025-11-26 06:07:31] -rw-------. 1 boincer umatlas 921875420 Nov 26 06:05 shared/HITS.pool.root.1
[2025-11-26 06:07:31]  *** Contents of shared directory: ***
[2025-11-26 06:07:31] total 1304120
[2025-11-26 06:07:31] -rw-r--r--. 2 boincer umatlas 407603472 Nov 25 22:27 ATLAS.root_0
[2025-11-26 06:07:31] -rw-r--r--. 2 boincer umatlas    590108 Nov 25 22:27 input.tar.gz
[2025-11-26 06:07:31] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 22:27 start_atlas.sh
[2025-11-26 06:07:31] -rw-------. 1 boincer umatlas 921875420 Nov 26 06:05 HITS.pool.root.1
[2025-11-26 06:07:31] -rw-------. 1 boincer umatlas   5314560 Nov 26 06:07 result.tar.gz
06:07:32 (3453553): run_atlas exited; CPU time 136366.789631
06:07:32 (3453553): called boinc_finish(0)

</stderr_txt>
]]>

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