Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:03:44 (3589329): wrapper (7.7.26015): starting
00:03:44 (3589329): wrapper: running run_atlas (--nthreads 9)
[2025-11-26 00:03:44] Arguments: --nthreads 9
[2025-11-26 00:03:44] Threads: 9
[2025-11-26 00:03:44] Checking for CVMFS
[2025-11-26 00:03:44] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 00:03:45] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 00:03:45] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 00:03:46] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 00:03:46] 2.13.3.0 11393 29606 335832 153309 2 346 24169990 32935937 17876 16776704 0 89629365 99.381 140863469 40640 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-26 00:03:46] CVMFS is ok
[2025-11-26 00:03:46] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 00:03:46] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 00:03:46] Further information can be found at the LHC@home message board.
[2025-11-26 00:03:46] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 00:03:46] Checking for apptainer binary...
[2025-11-26 00:03:46] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 00:03:46] Running /usr/bin/apptainer --version
[2025-11-26 00:03:46] apptainer version 1.4.4-1.el9
[2025-11-26 00:03:46] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 00:03:47] c6-5-37-2.aglt2.org
[2025-11-26 00:03:47] apptainer works
[2025-11-26 00:03:47] Set ATHENA_PROC_NUMBER=9
[2025-11-26 00:03:47] Set ATHENA_CORE_NUMBER=9
[2025-11-26 00:03:47] Starting ATLAS job with PandaID=6897531507
[2025-11-26 00:03:47] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 17:09:35]  *** The last 200 lines of the pilot log: ***
[2025-11-27 17:09:35] 2025-11-27 22:08:21,439 | INFO     | monitor loop #8783: job 0:6897531507 is in state 'finished'
[2025-11-27 17:09:35] 2025-11-27 22:08:21,440 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 17:09:35] 2025-11-27 22:08:23,206 | INFO     | time since job start (147807s) is within the limit (172800.0s)
[2025-11-27 17:09:35] 2025-11-27 22:08:23,946 | INFO     | monitor loop #8784: job 0:6897531507 is in state 'finished'
[2025-11-27 17:09:35] 2025-11-27 22:08:23,946 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 17:09:35] 2025-11-27 22:08:25,242 | INFO     | time since job start (147809s) is within the limit (172800.0s)
[2025-11-27 17:09:35] 2025-11-27 22:08:26,451 | INFO     | monitor loop #8785: job 0:6897531507 is in state 'finished'
[2025-11-27 17:09:35] 2025-11-27 22:08:26,456 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 17:09:35] 2025-11-27 22:08:27,249 | INFO     | time since job start (147811s) is within the limit (172800.0s)
[2025-11-27 17:09:35] 2025-11-27 22:08:28,967 | INFO     | monitor loop #8786: job 0:6897531507 is in state 'finished'
[2025-11-27 17:09:35] 2025-11-27 22:08:28,968 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 17:09:35] 2025-11-27 22:08:29,416 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-27 17:09:35] 2025-11-27 22:08:29,754 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 2733.8102678571427
[2025-11-27 17:09:35] 2025-11-27 22:08:29,978 | INFO     | using path: /tmp/boinchome/slots/4/PanDA_Pilot-6897531507/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 17:09:35] 2025-11-27 22:08:29,978 | INFO     | extracted standard info from prmon json
[2025-11-27 17:09:35] 2025-11-27 22:08:29,979 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 17:09:35] 2025-11-27 22:08:29,979 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 17:09:35] 2025-11-27 22:08:30,049 | INFO     | fitting pss+swap vs Time
[2025-11-27 17:09:35] 2025-11-27 22:08:30,057 | INFO     | sum of square deviations: 4394131535093.7153
[2025-11-27 17:09:35] 2025-11-27 22:08:30,467 | INFO     | sum of deviations: 15176035369941.648
[2025-11-27 17:09:35] 2025-11-27 22:08:30,467 | INFO     | mean x: 1764207444.9231405
[2025-11-27 17:09:35] 2025-11-27 22:08:30,481 | INFO     | mean y: 3035754.847520661
[2025-11-27 17:09:35] 2025-11-27 22:08:30,481 | INFO     | intersect: -6090016847.296978
[2025-11-27 17:09:35] 2025-11-27 22:08:30,484 | INFO     | chi2: 25.7238907999268
[2025-11-27 17:09:35] 2025-11-27 22:08:30,489 | INFO     | sum of square deviations: 4366952938221.9897
[2025-11-27 17:09:35] 2025-11-27 22:08:31,360 | INFO     | sum of deviations: 16012181692224.932
[2025-11-27 17:09:35] 2025-11-27 22:08:31,360 | INFO     | mean x: 1764207292.436439
[2025-11-27 17:09:35] 2025-11-27 22:08:31,361 | INFO     | mean y: 3040445.6186335403
[2025-11-27 17:09:35] 2025-11-27 22:08:31,361 | INFO     | intersect: -6465728077.621281
[2025-11-27 17:09:35] 2025-11-27 22:08:31,363 | INFO     | chi2: 22.557106119691895
[2025-11-27 17:09:35] 2025-11-27 22:08:31,363 | INFO     | current chi2=22.557106119691895 (change=12.310675336267234 %)
[2025-11-27 17:09:35] 2025-11-27 22:08:31,363 | INFO     | right removable region: 2414
[2025-11-27 17:09:35] 2025-11-27 22:08:31,366 | INFO     | sum of square deviations: 4366943456381.9937
[2025-11-27 17:09:35] 2025-11-27 22:08:31,494 | INFO     | PID=3598868 has CPU usage=3.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 17:09:35] 2025-11-27 22:08:31,503 | INFO     | .. there are 26 such processes running
[2025-11-27 17:09:35] 2025-11-27 22:08:31,508 | INFO     | sum of deviations: 14159914073975.24
[2025-11-27 17:09:35] 2025-11-27 22:08:31,508 | INFO     | mean x: 1764207597.436439
[2025-11-27 17:09:35] 2025-11-27 22:08:31,508 | INFO     | mean y: 3041454.3991718427
[2025-11-27 17:09:35] 2025-11-27 22:08:31,509 | INFO     | intersect: -5717442045.758401
[2025-11-27 17:09:35] 2025-11-27 22:08:31,511 | INFO     | chi2: 21.731224562221968
[2025-11-27 17:09:35] 2025-11-27 22:08:31,511 | INFO     | current chi2=21.731224562221968 (change=15.521237703731014 %)
[2025-11-27 17:09:35] 2025-11-27 22:08:31,511 | INFO     | left removable region: 10
[2025-11-27 17:09:35] 2025-11-27 22:08:31,514 | INFO     | sum of square deviations: 4307536274272.129
[2025-11-27 17:09:35] 2025-11-27 22:08:31,575 | INFO     | monitor loop #8787: job 0:6897531507 is in state 'finished'
[2025-11-27 17:09:35] 2025-11-27 22:08:31,575 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 17:09:35] 2025-11-27 22:08:31,645 | INFO     | sum of deviations: 14321788444655.88
[2025-11-27 17:09:35] 2025-11-27 22:08:31,645 | INFO     | mean x: 1764207566.9654741
[2025-11-27 17:09:35] 2025-11-27 22:08:31,645 | INFO     | mean y: 3051770.926372712
[2025-11-27 17:09:35] 2025-11-27 22:08:31,646 | INFO     | intersect: -5862623161.970171
[2025-11-27 17:09:35] 2025-11-27 22:08:31,648 | INFO     | chi2: 15.413319705516866
[2025-11-27 17:09:35] 2025-11-27 22:08:31,648 | INFO     | current memory leak: 3.32 B/s (using 2404 data points, chi2=15.41)
[2025-11-27 17:09:35] 2025-11-27 22:08:31,650 | INFO     | could have reported an average CPU frequency of 2894 MHz (84 samples)
[2025-11-27 17:09:35] 2025-11-27 22:08:31,650 | INFO     | ..............................
[2025-11-27 17:09:35] 2025-11-27 22:08:31,651 | INFO     | . Timing measurements:
[2025-11-27 17:09:35] 2025-11-27 22:08:31,651 | INFO     | . get job = 0 s
[2025-11-27 17:09:35] 2025-11-27 22:08:31,651 | INFO     | . initial setup = 5 s
[2025-11-27 17:09:35] 2025-11-27 22:08:31,651 | INFO     | . payload setup = 52 s
[2025-11-27 17:09:35] 2025-11-27 22:08:31,651 | INFO     | . stage-in = 0 s
[2025-11-27 17:09:35] 2025-11-27 22:08:31,651 | INFO     | . payload execution = 147632 s
[2025-11-27 17:09:35] 2025-11-27 22:08:31,651 | INFO     | . stage-out = 11 s
[2025-11-27 17:09:35] 2025-11-27 22:08:31,651 | INFO     | . log creation = 4 s
[2025-11-27 17:09:35] 2025-11-27 22:08:31,651 | INFO     | ..............................
[2025-11-27 17:09:35] 2025-11-27 22:08:32,379 | INFO     | 
[2025-11-27 17:09:35] 2025-11-27 22:08:32,380 | INFO     | job summary report
[2025-11-27 17:09:35] 2025-11-27 22:08:32,380 | INFO     | --------------------------------------------------
[2025-11-27 17:09:35] 2025-11-27 22:08:32,380 | INFO     | PanDA job id: 6897531507
[2025-11-27 17:09:35] 2025-11-27 22:08:32,380 | INFO     | task id: 47556161
[2025-11-27 17:09:35] 2025-11-27 22:08:32,380 | INFO     | errors: (none)
[2025-11-27 17:09:35] 2025-11-27 22:08:32,380 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 17:09:35] 2025-11-27 22:08:32,380 | INFO     | pilot state: finished 
[2025-11-27 17:09:35] 2025-11-27 22:08:32,380 | INFO     | transexitcode: 0
[2025-11-27 17:09:35] 2025-11-27 22:08:32,380 | INFO     | exeerrorcode: 0
[2025-11-27 17:09:35] 2025-11-27 22:08:32,380 | INFO     | exeerrordiag: 
[2025-11-27 17:09:35] 2025-11-27 22:08:32,381 | INFO     | exitcode: 0
[2025-11-27 17:09:35] 2025-11-27 22:08:32,381 | INFO     | exitmsg: OK
[2025-11-27 17:09:35] 2025-11-27 22:08:32,381 | INFO     | cpuconsumptiontime: 255377 s
[2025-11-27 17:09:35] 2025-11-27 22:08:32,381 | INFO     | nevents: 1000
[2025-11-27 17:09:35] 2025-11-27 22:08:32,381 | INFO     | neventsw: 0
[2025-11-27 17:09:35] 2025-11-27 22:08:32,381 | INFO     | pid: 3621792
[2025-11-27 17:09:35] 2025-11-27 22:08:32,381 | INFO     | pgrp: 3621792
[2025-11-27 17:09:35] 2025-11-27 22:08:32,381 | INFO     | corecount: 9
[2025-11-27 17:09:35] 2025-11-27 22:08:32,381 | INFO     | event service: False
[2025-11-27 17:09:35] 2025-11-27 22:08:32,381 | INFO     | sizes: {0: 2284094, 1: 2284293, 12: 2284293, 23: 2284321, 34: 2284349, 36: 2284639, 45: 2284795, 147687: 2378902, 147688: 2378901, 147700: 2387951, 147703: 2388007
[2025-11-27 17:09:35] 2025-11-27 22:08:32,381 | INFO     | --------------------------------------------------
[2025-11-27 17:09:35] 2025-11-27 22:08:32,381 | INFO     | 
[2025-11-27 17:09:35] 2025-11-27 22:08:32,382 | INFO     | executing command: ls -lF /tmp/boinchome/slots/4
[2025-11-27 17:09:35] 2025-11-27 22:08:32,477 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 17:09:35] 2025-11-27 22:08:32,477 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 17:09:35] 2025-11-27 22:08:32,478 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 17:09:35] 2025-11-27 22:08:32,478 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 17:09:35] 2025-11-27 22:08:32,478 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 17:09:35] 2025-11-27 22:08:32,478 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 17:09:35] 2025-11-27 22:08:32,478 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 17:09:35] 2025-11-27 22:08:32,478 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 17:09:35] 2025-11-27 22:08:32,478 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 17:09:35] 2025-11-27 22:08:32,478 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 17:09:35] 2025-11-27 22:08:32,478 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 17:09:35] 2025-11-27 22:08:32,478 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 17:09:35] 2025-11-27 22:08:32,478 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 17:09:35] 2025-11-27 22:08:32,478 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 17:09:35] 2025-11-27 22:08:32,478 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 17:09:35] 2025-11-27 22:08:32,478 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 17:09:35] 2025-11-27 22:08:32,478 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 17:09:35] 2025-11-27 22:08:32,479 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 17:09:35] 2025-11-27 22:08:32,479 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 17:09:35] 2025-11-27 22:08:32,479 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 17:09:35] 2025-11-27 22:08:32,479 | INFO     | job 6897531507 has completed (purged errors)
[2025-11-27 17:09:35] 2025-11-27 22:08:32,479 | INFO     | overall cleanup function is called
[2025-11-27 17:09:35] 2025-11-27 22:08:33,501 | INFO     | --- collectZombieJob: --- 10, [3621792]
[2025-11-27 17:09:35] 2025-11-27 22:08:33,502 | INFO     | zombie collector waiting for pid 3621792
[2025-11-27 17:09:35] 2025-11-27 22:08:33,502 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 17:09:35] 2025-11-27 22:08:33,502 | INFO     | collected zombie processes
[2025-11-27 17:09:35] 2025-11-27 22:08:33,502 | INFO     | will attempt to kill all subprocesses of pid=3621792
[2025-11-27 17:09:35] 2025-11-27 22:08:34,925 | INFO     | process IDs to be killed: [3621792] (in reverse order)
[2025-11-27 17:09:35] 2025-11-27 22:08:35,549 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 17:09:35] 2025-11-27 22:08:35,550 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 17:09:35] 2025-11-27 22:08:35,578 | INFO     | did not find any defunct processes belonging to 3621792
[2025-11-27 17:09:35] 2025-11-27 22:08:35,603 | INFO     | did not find any defunct processes belonging to 3621792
[2025-11-27 17:09:35] 2025-11-27 22:08:35,612 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 17:09:35] 2025-11-27 22:08:35,612 | INFO     | ready for new job
[2025-11-27 17:09:35] 2025-11-27 22:08:35,612 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 17:09:35] 2025-11-27 22:08:35,629 | INFO     | ***************************************
[2025-11-27 17:09:35] 2025-11-27 22:08:35,630 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 17:09:35] 2025-11-27 22:08:35,630 | INFO     | ***************************************
[2025-11-27 17:09:35] 2025-11-27 22:08:35,630 | INFO     | 
[2025-11-27 17:09:35] 2025-11-27 22:08:35,637 | INFO     | architecture information:
[2025-11-27 17:09:35] 2025-11-27 22:08:35,638 | INFO     | executing command: cat /etc/os-release
[2025-11-27 17:09:35] 2025-11-27 22:08:35,687 | INFO     | cat /etc/os-release:
[2025-11-27 17:09:35] NAME="CentOS Linux"
[2025-11-27 17:09:35] VERSION="7 (Core)"
[2025-11-27 17:09:35] ID="centos"
[2025-11-27 17:09:35] ID_LIKE="rhel fedora"
[2025-11-27 17:09:35] VERSION_ID="7"
[2025-11-27 17:09:35] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 17:09:35] ANSI_COLOR="0;31"
[2025-11-27 17:09:35] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 17:09:35] HOME_URL="https://www.centos.org/"
[2025-11-27 17:09:35] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 17:09:35] 
[2025-11-27 17:09:35] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 17:09:35] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 17:09:35] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 17:09:35] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 17:09:35] 
[2025-11-27 17:09:35] 2025-11-27 22:08:35,687 | INFO     | ***************************************
[2025-11-27 17:09:35] 2025-11-27 22:08:36,199 | INFO     | executing command: df -mP /tmp/boinchome/slots/4
[2025-11-27 17:09:35] 2025-11-27 22:08:36,378 | INFO     | sufficient remaining disk space (69169315840 B)
[2025-11-27 17:09:35] 2025-11-27 22:08:36,378 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 17:09:35] 2025-11-27 22:08:36,379 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 17:09:35] 2025-11-27 22:08:36,379 | INFO     | update_server=False
[2025-11-27 17:09:35] 2025-11-27 22:08:36,379 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 17:09:35] 2025-11-27 22:08:36,403 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 17:09:35] 2025-11-27 22:08:36,493 | INFO     | all job control threads have been joined
[2025-11-27 17:09:35] 2025-11-27 22:08:36,626 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-27 17:09:35] 2025-11-27 22:08:36,627 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-27 17:09:35] 2025-11-27 22:08:36,653 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 17:09:35] 2025-11-27 22:08:36,654 | INFO     | will abort loop
[2025-11-27 17:09:35] 2025-11-27 22:08:36,765 | INFO     | all data control threads have been joined
[2025-11-27 17:09:35] 2025-11-27 22:08:37,002 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 17:09:35] 2025-11-27 22:08:37,086 | INFO     | all payload control threads have been joined
[2025-11-27 17:09:35] 2025-11-27 22:08:37,385 | INFO     | [job] retrieve thread has finished
[2025-11-27 17:09:35] 2025-11-27 22:08:37,480 | INFO     | [job] validate thread has finished
[2025-11-27 17:09:35] 2025-11-27 22:08:37,480 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 17:09:35] 2025-11-27 22:08:37,480 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 17:09:35] 2025-11-27 22:08:37,500 | INFO     | [job] control thread has finished
[2025-11-27 17:09:35] 2025-11-27 22:08:37,660 | INFO     | [job] job monitor thread has finished
[2025-11-27 17:09:35] 2025-11-27 22:08:37,807 | INFO     | [data] control thread has finished
[2025-11-27 17:09:35] 2025-11-27 22:08:37,934 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 17:09:35] 2025-11-27 22:08:38,008 | INFO     | [job] queue monitor thread has finished
[2025-11-27 17:09:35] 2025-11-27 22:08:38,095 | INFO     | [payload] control thread has finished
[2025-11-27 17:09:35] 2025-11-27 22:08:38,110 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 17:09:35] 2025-11-27 22:08:38,303 | INFO     | [data] copytool_in thread has finished
[2025-11-27 17:09:35] 2025-11-27 22:08:38,303 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 17:09:35] 2025-11-27 22:08:38,379 | INFO     | [payload] validate_post thread has finished
[2025-11-27 17:09:35] 2025-11-27 22:08:38,410 | INFO     | [data] copytool_out thread has finished
[2025-11-27 17:09:35] 2025-11-27 22:08:38,773 | INFO     | [payload] failed_post thread has finished
[2025-11-27 17:09:35] 2025-11-27 22:08:42,119 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 17:09:35] 2025-11-27 22:09:04,810 | INFO     | PID=3598868 has CPU usage=4.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 17:09:35] 2025-11-27 22:09:04,810 | INFO     | .. there are 26 such processes running
[2025-11-27 17:09:35] 2025-11-27 22:09:04,811 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 17:09:35] 2025-11-27 22:09:04,811 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 17:09:35] 2025-11-27 22:09:04,811 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 17:09:35] 2025-11-27 22:09:27,106 | INFO     | [monitor] cgroup control has ended
[2025-11-27 17:09:35] 2025-11-27 22:09:28,002 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139682591340352)>', '<ExcThread(monitor, started 139682226611968)>']
[2025-11-27 17:09:35] 2025-11-27 22:09:28,029 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 17:09:35] 2025-11-27 22:09:28,030 | INFO     | [monitor] control thread has ended
[2025-11-27 17:09:35] 2025-11-27 22:09:33,045 | INFO     | all workflow threads have been joined
[2025-11-27 17:09:35] 2025-11-27 22:09:33,046 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 17:09:35] 2025-11-27 22:09:33,047 | INFO     | traces error code: 0
[2025-11-27 17:09:35] 2025-11-27 22:09:33,047 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 17:09:35] 2025-11-27 22:09:33,750 [wrapper] ==== pilot stdout END ====
[2025-11-27 17:09:35] 2025-11-27 22:09:33,767 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 17:09:35] 2025-11-27 22:09:33,792 [wrapper] pilotpid: 3598868
[2025-11-27 17:09:35] 2025-11-27 22:09:33,808 [wrapper] Pilot exit status: 0
[2025-11-27 17:09:35] 2025-11-27 22:09:33,919 [wrapper] pandaids: 6897531507
[2025-11-27 17:09:35] 2025-11-27 22:09:34,181 [wrapper] cleanup supervisor_pilot 2481047 3598870
[2025-11-27 17:09:35] 2025-11-27 22:09:34,196 [wrapper] Test setup, not cleaning
[2025-11-27 17:09:35] 2025-11-27 22:09:34,223 [wrapper] apfmon messages muted
[2025-11-27 17:09:35] 2025-11-27 22:09:34,241 [wrapper] ==== wrapper stdout END ====
[2025-11-27 17:09:35] 2025-11-27 22:09:34,264 [wrapper] ==== wrapper stderr END ====
[2025-11-27 17:09:35]  *** Error codes and diagnostics ***
[2025-11-27 17:09:35]     "exeErrorCode": 0,
[2025-11-27 17:09:35]     "exeErrorDiag": "",
[2025-11-27 17:09:35]     "pilotErrorCode": 0,
[2025-11-27 17:09:35]     "pilotErrorDiag": "",
[2025-11-27 17:09:35]  *** Listing of results directory ***
[2025-11-27 17:09:35] total 1341080
[2025-11-27 17:09:35] -rw-r--r--. 1 boincer umatlas    576529 Nov 25 11:48 pilot3.tar.gz
[2025-11-27 17:09:35] -rwx------. 1 boincer umatlas     36292 Nov 25 12:01 runpilot2-wrapper.sh
[2025-11-27 17:09:35] -rw-r--r--. 1 boincer umatlas      5112 Nov 25 12:02 queuedata.json
[2025-11-27 17:09:35] -rw-r--r--. 1 boincer umatlas       100 Nov 26 00:03 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 17:09:35] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 26 00:03 run_atlas
[2025-11-27 17:09:35] -rw-r--r--. 1 boincer umatlas       105 Nov 26 00:03 job.xml
[2025-11-27 17:09:35] -rw-r--r--. 2 boincer umatlas 408692112 Nov 26 00:03 EVNT.47483658._002298.pool.root.1
[2025-11-27 17:09:35] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 00:03 start_atlas.sh
[2025-11-27 17:09:35] drwxrwx--x. 2 boincer umatlas      4096 Nov 26 00:03 shared
[2025-11-27 17:09:35] -rw-r--r--. 2 boincer umatlas    590108 Nov 26 00:03 input.tar.gz
[2025-11-27 17:09:35] -rw-r--r--. 1 boincer umatlas         0 Nov 26 00:03 boinc_lockfile
[2025-11-27 17:09:35] -rw-r--r--. 1 boincer umatlas      2786 Nov 26 00:03 pandaJob.out
[2025-11-27 17:09:35] -rw-------. 1 boincer umatlas        57 Nov 26 00:03 setup.sh.local
[2025-11-27 17:09:35] -rw-------. 1 boincer umatlas    991877 Nov 26 00:04 agis_schedconf.cvmfs.json
[2025-11-27 17:09:35] drwx------. 5 boincer umatlas      4096 Nov 26 00:04 pilot3
[2025-11-27 17:09:35] -rw-r--r--. 1 boincer umatlas       533 Nov 27 16:20 boinc_task_state.xml
[2025-11-27 17:09:35] -rw-r--r--. 1 boincer umatlas      6843 Nov 27 17:04 init_data.xml
[2025-11-27 17:09:35] -rw-------. 1 boincer umatlas 916985879 Nov 27 17:06 HITS.47556161._002820.pool.root.1
[2025-11-27 17:09:35] -rw-------. 1 boincer umatlas      1059 Nov 27 17:07 memory_monitor_summary.json
[2025-11-27 17:09:35] -rw-------. 1 boincer umatlas   1516240 Nov 27 17:07 agis_ddmendpoints.agis.ALL.json
[2025-11-27 17:09:35] -rw-------. 1 boincer umatlas   3279257 Nov 27 17:07 log.47556161._002820.job.log.tgz.1
[2025-11-27 17:09:35] -rw-------. 1 boincer umatlas      8622 Nov 27 17:08 heartbeat.json
[2025-11-27 17:09:35] -rw-------. 1 boincer umatlas        95 Nov 27 17:09 pilot_heartbeat.json
[2025-11-27 17:09:35] -rw-r--r--. 1 boincer umatlas      8192 Nov 27 17:09 boinc_mmap_file
[2025-11-27 17:09:35] -rw-r--r--. 1 boincer umatlas        29 Nov 27 17:09 wrapper_checkpoint.txt
[2025-11-27 17:09:35] -rw-------. 1 boincer umatlas      5010 Nov 27 17:09 pilotlog.txt
[2025-11-27 17:09:35] -rw-------. 1 boincer umatlas  18554676 Nov 27 17:09 log.47556161._002820.job.log.1
[2025-11-27 17:09:35] -rw-------. 1 boincer umatlas       353 Nov 27 17:09 output.list
[2025-11-27 17:09:35] -rw-r--r--. 1 boincer umatlas       620 Nov 27 17:09 runtime_log
[2025-11-27 17:09:35] -rw-------. 1 boincer umatlas  21852160 Nov 27 17:09 result.tar.gz
[2025-11-27 17:09:35] -rw-r--r--. 1 boincer umatlas      9349 Nov 27 17:09 runtime_log.err
[2025-11-27 17:09:35] -rw-------. 1 boincer umatlas       664 Nov 27 17:09 MewLDmgaBi8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmZYMKDmqowTVo.diag
[2025-11-27 17:09:35] -rw-r--r--. 1 boincer umatlas     21893 Nov 27 17:09 stderr.txt
[2025-11-27 17:09:35] HITS file was successfully produced:
[2025-11-27 17:09:35] -rw-------. 1 boincer umatlas 916985879 Nov 27 17:06 shared/HITS.pool.root.1
[2025-11-27 17:09:35]  *** Contents of shared directory: ***
[2025-11-27 17:09:35] total 1316556
[2025-11-27 17:09:35] -rw-r--r--. 2 boincer umatlas 408692112 Nov 26 00:03 ATLAS.root_0
[2025-11-27 17:09:35] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 00:03 start_atlas.sh
[2025-11-27 17:09:35] -rw-r--r--. 2 boincer umatlas    590108 Nov 26 00:03 input.tar.gz
[2025-11-27 17:09:35] -rw-------. 1 boincer umatlas 916985879 Nov 27 17:06 HITS.pool.root.1
[2025-11-27 17:09:35] -rw-------. 1 boincer umatlas  21852160 Nov 27 17:09 result.tar.gz
17:09:37 (3589329): run_atlas exited; CPU time 258444.840000
17:09:37 (3589329): called boinc_finish(0)

</stderr_txt>
]]>

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