Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
22:37:29 (4028530): wrapper (7.7.26015): starting
22:37:29 (4028530): wrapper: running run_atlas (--nthreads 8)
[2025-11-25 22:37:30] Arguments: --nthreads 8
[2025-11-25 22:37:30] Threads: 8
[2025-11-25 22:37:30] Checking for CVMFS
[2025-11-25 22:37:30] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 22:37:31] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 22:37:31] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 22:37:32] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 22:37:32] 2.13.3.0 7030 4838 237336 153307 2 408 22433316 32935936 59499 16776704 0 39190610 99.720 30322326 32553 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-25 22:37:32] CVMFS is ok
[2025-11-25 22:37:32] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 22:37:32] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 22:37:32] Further information can be found at the LHC@home message board.
[2025-11-25 22:37:32] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 22:37:32] Checking for apptainer binary...
[2025-11-25 22:37:32] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 22:37:32] Running /usr/bin/apptainer --version
[2025-11-25 22:37:32] apptainer version 1.4.4-1.el9
[2025-11-25 22:37:32] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 22:37:32] lc-10-10.aglt2.org
[2025-11-25 22:37:32] apptainer works
[2025-11-25 22:37:32] Set ATHENA_PROC_NUMBER=8
[2025-11-25 22:37:32] Set ATHENA_CORE_NUMBER=8
[2025-11-25 22:37:33] Starting ATLAS job with PandaID=6897864810
[2025-11-25 22:37:33] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 20:36:33]  *** The last 200 lines of the pilot log: ***
[2025-11-26 20:36:33] 2025-11-27 01:35:13,644 | INFO     | time since job start (78999s) is within the limit (172800.0s)
[2025-11-26 20:36:33] 2025-11-27 01:35:15,651 | INFO     | time since job start (79001s) is within the limit (172800.0s)
[2025-11-26 20:36:33] 2025-11-27 01:35:15,924 | INFO     | monitor loop #3971: job 0:6897864810 is in state 'finished'
[2025-11-26 20:36:33] 2025-11-27 01:35:15,924 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 20:36:33] 2025-11-27 01:35:17,669 | INFO     | time since job start (79003s) is within the limit (172800.0s)
[2025-11-26 20:36:33] 2025-11-27 01:35:18,432 | INFO     | monitor loop #3972: job 0:6897864810 is in state 'finished'
[2025-11-26 20:36:33] 2025-11-27 01:35:18,432 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 20:36:33] 2025-11-27 01:35:19,327 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-26 20:36:33] 2025-11-27 01:35:19,362 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2797.11646875
[2025-11-26 20:36:33] 2025-11-27 01:35:19,478 | INFO     | using path: /tmp/boinchome/slots/5/PanDA_Pilot-6897864810/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 20:36:33] 2025-11-27 01:35:19,479 | INFO     | extracted standard info from prmon json
[2025-11-26 20:36:33] 2025-11-27 01:35:19,479 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 20:36:33] 2025-11-27 01:35:19,479 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 20:36:33] 2025-11-27 01:35:19,695 | INFO     | fitting pss+swap vs Time
[2025-11-26 20:36:33] 2025-11-27 01:35:19,715 | INFO     | sum of square deviations: 670288101547.5942
[2025-11-26 20:36:33] 2025-11-27 01:35:19,773 | INFO     | time since job start (79005s) is within the limit (172800.0s)
[2025-11-26 20:36:33] 2025-11-27 01:35:20,027 | INFO     | sum of deviations: 2531803597668.0
[2025-11-26 20:36:33] 2025-11-27 01:35:20,027 | INFO     | mean x: 1764167858.9102862
[2025-11-26 20:36:33] 2025-11-27 01:35:20,027 | INFO     | mean y: 2869977.7672080435
[2025-11-26 20:36:33] 2025-11-27 01:35:20,027 | INFO     | intersect: -6660722172.7823515
[2025-11-26 20:36:33] 2025-11-27 01:35:20,029 | INFO     | chi2: 15.791931424729718
[2025-11-26 20:36:33] 2025-11-27 01:35:20,035 | INFO     | sum of square deviations: 662542700339.2759
[2025-11-26 20:36:33] 2025-11-27 01:35:20,101 | INFO     | sum of deviations: 2956394851624.6953
[2025-11-26 20:36:33] 2025-11-27 01:35:20,101 | INFO     | mean x: 1764167706.417702
[2025-11-26 20:36:33] 2025-11-27 01:35:20,101 | INFO     | mean y: 2878335.9169254657
[2025-11-26 20:36:33] 2025-11-27 01:35:20,101 | INFO     | intersect: -7869182320.679307
[2025-11-26 20:36:33] 2025-11-27 01:35:20,106 | INFO     | chi2: 12.686845119069197
[2025-11-26 20:36:33] 2025-11-27 01:35:20,106 | INFO     | current chi2=12.686845119069197 (change=19.66248600090831 %)
[2025-11-26 20:36:33] 2025-11-27 01:35:20,106 | INFO     | right removable region: 1287
[2025-11-26 20:36:33] 2025-11-27 01:35:20,108 | INFO     | sum of square deviations: 662541193639.2767
[2025-11-26 20:36:33] 2025-11-27 01:35:20,176 | INFO     | sum of deviations: 2017468134935.602
[2025-11-26 20:36:33] 2025-11-27 01:35:20,176 | INFO     | mean x: 1764168011.417702
[2025-11-26 20:36:33] 2025-11-27 01:35:20,176 | INFO     | mean y: 2880101.85947205
[2025-11-26 20:36:33] 2025-11-27 01:35:20,177 | INFO     | intersect: -5369091908.149186
[2025-11-26 20:36:33] 2025-11-27 01:35:20,178 | INFO     | chi2: 11.723509508019058
[2025-11-26 20:36:33] 2025-11-27 01:35:20,178 | INFO     | current chi2=11.723509508019058 (change=25.76266200307599 %)
[2025-11-26 20:36:33] 2025-11-27 01:35:20,186 | INFO     | sum of square deviations: 654854272157.6659
[2025-11-26 20:36:33] 2025-11-27 01:35:20,249 | INFO     | sum of deviations: 1723274853858.451
[2025-11-26 20:36:33] 2025-11-27 01:35:20,250 | INFO     | mean x: 1764168163.924396
[2025-11-26 20:36:33] 2025-11-27 01:35:20,250 | INFO     | mean y: 2885933.911925175
[2025-11-26 20:36:33] 2025-11-27 01:35:20,250 | INFO     | intersect: -4639592193.094299
[2025-11-26 20:36:33] 2025-11-27 01:35:20,256 | INFO     | chi2: 10.318106765210612
[2025-11-26 20:36:33] 2025-11-27 01:35:20,256 | INFO     | current chi2=10.318106765210612 (change=11.987901249597057 %)
[2025-11-26 20:36:33] 2025-11-27 01:35:20,256 | INFO     | left removable region: 20
[2025-11-26 20:36:33] 2025-11-27 01:35:20,258 | INFO     | sum of square deviations: 630658411921.4431
[2025-11-26 20:36:33] 2025-11-27 01:35:20,362 | INFO     | sum of deviations: 2093389150417.3596
[2025-11-26 20:36:33] 2025-11-27 01:35:20,362 | INFO     | mean x: 1764168285.9400158
[2025-11-26 20:36:33] 2025-11-27 01:35:20,362 | INFO     | mean y: 2898848.083662194
[2025-11-26 20:36:33] 2025-11-27 01:35:20,362 | INFO     | intersect: -5853029939.17438
[2025-11-26 20:36:33] 2025-11-27 01:35:20,364 | INFO     | chi2: 6.5344956399429845
[2025-11-26 20:36:33] 2025-11-27 01:35:20,364 | INFO     | current memory leak: 3.32 B/s (using 1267 data points, chi2=6.53)
[2025-11-26 20:36:33] 2025-11-27 01:35:20,370 | INFO     | could have reported an average CPU frequency of 2727 MHz (46 samples)
[2025-11-26 20:36:33] 2025-11-27 01:35:20,370 | INFO     | ..............................
[2025-11-26 20:36:33] 2025-11-27 01:35:20,370 | INFO     | . Timing measurements:
[2025-11-26 20:36:33] 2025-11-27 01:35:20,370 | INFO     | . get job = 0 s
[2025-11-26 20:36:33] 2025-11-27 01:35:20,370 | INFO     | . initial setup = 5 s
[2025-11-26 20:36:33] 2025-11-27 01:35:20,370 | INFO     | . payload setup = 42 s
[2025-11-26 20:36:33] 2025-11-27 01:35:20,370 | INFO     | . stage-in = 0 s
[2025-11-26 20:36:33] 2025-11-27 01:35:20,370 | INFO     | . payload execution = 78857 s
[2025-11-26 20:36:33] 2025-11-27 01:35:20,370 | INFO     | . stage-out = 7 s
[2025-11-26 20:36:33] 2025-11-27 01:35:20,370 | INFO     | . log creation = 1 s
[2025-11-26 20:36:33] 2025-11-27 01:35:20,371 | INFO     | ..............................
[2025-11-26 20:36:33] 2025-11-27 01:35:20,566 | INFO     | 
[2025-11-26 20:36:33] 2025-11-27 01:35:20,568 | INFO     | job summary report
[2025-11-26 20:36:33] 2025-11-27 01:35:20,568 | INFO     | --------------------------------------------------
[2025-11-26 20:36:33] 2025-11-27 01:35:20,568 | INFO     | PanDA job id: 6897864810
[2025-11-26 20:36:33] 2025-11-27 01:35:20,568 | INFO     | task id: 47556161
[2025-11-26 20:36:33] 2025-11-27 01:35:20,568 | INFO     | errors: (none)
[2025-11-26 20:36:33] 2025-11-27 01:35:20,568 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 20:36:33] 2025-11-27 01:35:20,569 | INFO     | pilot state: finished 
[2025-11-26 20:36:33] 2025-11-27 01:35:20,569 | INFO     | transexitcode: 0
[2025-11-26 20:36:33] 2025-11-27 01:35:20,569 | INFO     | exeerrorcode: 0
[2025-11-26 20:36:33] 2025-11-27 01:35:20,569 | INFO     | exeerrordiag: 
[2025-11-26 20:36:33] 2025-11-27 01:35:20,569 | INFO     | exitcode: 0
[2025-11-26 20:36:33] 2025-11-27 01:35:20,569 | INFO     | exitmsg: OK
[2025-11-26 20:36:33] 2025-11-27 01:35:20,569 | INFO     | cpuconsumptiontime: 257308 s
[2025-11-26 20:36:33] 2025-11-27 01:35:20,569 | INFO     | nevents: 1000
[2025-11-26 20:36:33] 2025-11-27 01:35:20,573 | INFO     | neventsw: 0
[2025-11-26 20:36:33] 2025-11-27 01:35:20,573 | INFO     | pid: 4044174
[2025-11-26 20:36:33] 2025-11-27 01:35:20,573 | INFO     | pgrp: 4044174
[2025-11-26 20:36:33] 2025-11-27 01:35:20,574 | INFO     | corecount: 8
[2025-11-26 20:36:33] 2025-11-27 01:35:20,574 | INFO     | event service: False
[2025-11-26 20:36:33] 2025-11-27 01:35:20,574 | INFO     | sizes: {0: 2284032, 1: 2284116, 2: 2284315, 13: 2284315, 24: 2284371, 31: 2284661, 35: 2284817, 78901: 2343688, 78908: 2352682, 78909: 2352738, 78942: 2352984}
[2025-11-26 20:36:33] 2025-11-27 01:35:20,574 | INFO     | --------------------------------------------------
[2025-11-26 20:36:33] 2025-11-27 01:35:20,574 | INFO     | 
[2025-11-26 20:36:33] 2025-11-27 01:35:20,574 | INFO     | executing command: ls -lF /tmp/boinchome/slots/5
[2025-11-26 20:36:33] 2025-11-27 01:35:20,674 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 20:36:33] 2025-11-27 01:35:20,674 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 20:36:33] 2025-11-27 01:35:20,674 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 20:36:33] 2025-11-27 01:35:20,674 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 20:36:33] 2025-11-27 01:35:20,674 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 20:36:33] 2025-11-27 01:35:20,674 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 20:36:33] 2025-11-27 01:35:20,674 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 20:36:33] 2025-11-27 01:35:20,675 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 20:36:33] 2025-11-27 01:35:20,675 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 20:36:33] 2025-11-27 01:35:20,675 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 20:36:33] 2025-11-27 01:35:20,675 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 20:36:33] 2025-11-27 01:35:20,675 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 20:36:33] 2025-11-27 01:35:20,675 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 20:36:33] 2025-11-27 01:35:20,675 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 20:36:33] 2025-11-27 01:35:20,675 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 20:36:33] 2025-11-27 01:35:20,675 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 20:36:33] 2025-11-27 01:35:20,675 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 20:36:33] 2025-11-27 01:35:20,675 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 20:36:33] 2025-11-27 01:35:20,676 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 20:36:33] 2025-11-27 01:35:20,676 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 20:36:33] 2025-11-27 01:35:20,676 | INFO     | job 6897864810 has completed (purged errors)
[2025-11-26 20:36:33] 2025-11-27 01:35:20,676 | INFO     | overall cleanup function is called
[2025-11-26 20:36:33] 2025-11-27 01:35:21,732 | INFO     | --- collectZombieJob: --- 10, [4044174]
[2025-11-26 20:36:33] 2025-11-27 01:35:21,732 | INFO     | zombie collector waiting for pid 4044174
[2025-11-26 20:36:33] 2025-11-27 01:35:21,732 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 20:36:33] 2025-11-27 01:35:21,732 | INFO     | collected zombie processes
[2025-11-26 20:36:33] 2025-11-27 01:35:21,733 | INFO     | will attempt to kill all subprocesses of pid=4044174
[2025-11-26 20:36:33] 2025-11-27 01:35:22,985 | INFO     | PID=4032831 has CPU usage=7.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-26 20:36:33] 2025-11-27 01:35:22,985 | INFO     | .. there are 94 such processes running
[2025-11-26 20:36:33] 2025-11-27 01:35:23,477 | INFO     | process IDs to be killed: [4044174] (in reverse order)
[2025-11-26 20:36:33] 2025-11-27 01:35:23,898 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 20:36:33] 2025-11-27 01:35:23,899 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 20:36:33] 2025-11-27 01:35:24,026 | INFO     | did not find any defunct processes belonging to 4044174
[2025-11-26 20:36:33] 2025-11-27 01:35:24,214 | INFO     | did not find any defunct processes belonging to 4044174
[2025-11-26 20:36:33] 2025-11-27 01:35:24,245 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 20:36:33] 2025-11-27 01:35:24,246 | INFO     | ready for new job
[2025-11-26 20:36:33] 2025-11-27 01:35:24,246 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 20:36:33] 2025-11-27 01:35:24,345 | INFO     | ***************************************
[2025-11-26 20:36:33] 2025-11-27 01:35:24,345 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 20:36:33] 2025-11-27 01:35:24,345 | INFO     | ***************************************
[2025-11-26 20:36:33] 2025-11-27 01:35:24,345 | INFO     | 
[2025-11-26 20:36:33] 2025-11-27 01:35:24,570 | INFO     | architecture information:
[2025-11-26 20:36:33] 2025-11-27 01:35:24,641 | INFO     | executing command: cat /etc/os-release
[2025-11-26 20:36:33] 2025-11-27 01:35:24,746 | INFO     | cat /etc/os-release:
[2025-11-26 20:36:33] NAME="CentOS Linux"
[2025-11-26 20:36:33] VERSION="7 (Core)"
[2025-11-26 20:36:33] ID="centos"
[2025-11-26 20:36:33] ID_LIKE="rhel fedora"
[2025-11-26 20:36:33] VERSION_ID="7"
[2025-11-26 20:36:33] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 20:36:33] ANSI_COLOR="0;31"
[2025-11-26 20:36:33] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 20:36:33] HOME_URL="https://www.centos.org/"
[2025-11-26 20:36:33] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 20:36:33] 
[2025-11-26 20:36:33] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 20:36:33] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 20:36:33] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 20:36:33] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 20:36:33] 
[2025-11-26 20:36:33] 2025-11-27 01:35:24,746 | INFO     | ***************************************
[2025-11-26 20:36:33] 2025-11-27 01:35:25,259 | INFO     | executing command: df -mP /tmp/boinchome/slots/5
[2025-11-26 20:36:33] 2025-11-27 01:35:25,311 | INFO     | sufficient remaining disk space (83764445184 B)
[2025-11-26 20:36:33] 2025-11-27 01:35:25,311 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 20:36:33] 2025-11-27 01:35:25,311 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 20:36:33] 2025-11-27 01:35:25,311 | INFO     | update_server=False
[2025-11-26 20:36:33] 2025-11-27 01:35:25,311 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 20:36:33] 2025-11-27 01:35:25,311 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 20:36:33] 2025-11-27 01:35:25,312 | INFO     | aborting loop
[2025-11-26 20:36:33] 2025-11-27 01:35:25,530 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 20:36:33] 2025-11-27 01:35:25,583 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 20:36:33] 2025-11-27 01:35:25,596 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 20:36:33] 2025-11-27 01:35:25,845 | INFO     | all job control threads have been joined
[2025-11-26 20:36:33] 2025-11-27 01:35:26,224 | INFO     | all payload control threads have been joined
[2025-11-26 20:36:33] 2025-11-27 01:35:26,247 | INFO     | all data control threads have been joined
[2025-11-26 20:36:33] 2025-11-27 01:35:26,319 | INFO     | [job] retrieve thread has finished
[2025-11-26 20:36:33] 2025-11-27 01:35:26,320 | INFO     | [job] job monitor thread has finished
[2025-11-26 20:36:33] 2025-11-27 01:35:26,340 | INFO     | [payload] failed_post thread has finished
[2025-11-26 20:36:33] 2025-11-27 01:35:26,341 | INFO     | [payload] validate_post thread has finished
[2025-11-26 20:36:33] 2025-11-27 01:35:26,591 | INFO     | [job] queue monitor thread has finished
[2025-11-26 20:36:33] 2025-11-27 01:35:26,639 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 20:36:33] 2025-11-27 01:35:26,640 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 20:36:33] 2025-11-27 01:35:26,854 | INFO     | [job] control thread has finished
[2025-11-26 20:36:33] 2025-11-27 01:35:27,107 | INFO     | [job] validate thread has finished
[2025-11-26 20:36:33] 2025-11-27 01:35:27,244 | INFO     | [payload] control thread has finished
[2025-11-26 20:36:33] 2025-11-27 01:35:27,263 | INFO     | [data] control thread has finished
[2025-11-26 20:36:33] 2025-11-27 01:35:27,526 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 20:36:33] 2025-11-27 01:35:27,574 | INFO     | [data] copytool_in thread has finished
[2025-11-26 20:36:33] 2025-11-27 01:35:27,574 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 20:36:33] 2025-11-27 01:35:27,635 | INFO     | [data] copytool_out thread has finished
[2025-11-26 20:36:33] 2025-11-27 01:35:29,565 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 20:36:33] 2025-11-27 01:35:56,723 | INFO     | PID=4032831 has CPU usage=4.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-26 20:36:33] 2025-11-27 01:35:56,723 | INFO     | .. there are 93 such processes running
[2025-11-26 20:36:33] 2025-11-27 01:35:56,723 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 20:36:33] 2025-11-27 01:35:56,723 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 20:36:33] 2025-11-27 01:35:56,723 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 20:36:33] 2025-11-27 01:35:59,585 | INFO     | [monitor] cgroup control has ended
[2025-11-26 20:36:33] 2025-11-27 01:36:00,838 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139627045320512)>', '<ExcThread(monitor, started 139626417215232)>']
[2025-11-26 20:36:33] 2025-11-27 01:36:01,791 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 20:36:33] 2025-11-27 01:36:01,791 | INFO     | [monitor] control thread has ended
[2025-11-26 20:36:33] 2025-11-27 01:36:05,891 | INFO     | all workflow threads have been joined
[2025-11-26 20:36:33] 2025-11-27 01:36:05,891 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 20:36:33] 2025-11-27 01:36:05,892 | INFO     | traces error code: 0
[2025-11-26 20:36:33] 2025-11-27 01:36:05,892 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 20:36:33] 2025-11-27 01:36:06,379 [wrapper] ==== pilot stdout END ====
[2025-11-26 20:36:33] 2025-11-27 01:36:06,440 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 20:36:33] 2025-11-27 01:36:06,460 [wrapper] pilotpid: 4032831
[2025-11-26 20:36:33] 2025-11-27 01:36:06,489 [wrapper] Pilot exit status: 0
[2025-11-26 20:36:33] 2025-11-27 01:36:06,596 [wrapper] pandaids: 6897864810
[2025-11-26 20:36:33] 2025-11-27 01:36:06,813 [wrapper] cleanup supervisor_pilot  870986 4032832
[2025-11-26 20:36:33] 2025-11-27 01:36:06,831 [wrapper] Test setup, not cleaning
[2025-11-26 20:36:33] 2025-11-27 01:36:06,902 [wrapper] apfmon messages muted
[2025-11-26 20:36:33] 2025-11-27 01:36:06,932 [wrapper] ==== wrapper stdout END ====
[2025-11-26 20:36:33] 2025-11-27 01:36:06,953 [wrapper] ==== wrapper stderr END ====
[2025-11-26 20:36:33]  *** Error codes and diagnostics ***
[2025-11-26 20:36:33]     "exeErrorCode": 0,
[2025-11-26 20:36:33]     "exeErrorDiag": "",
[2025-11-26 20:36:33]     "pilotErrorCode": 0,
[2025-11-26 20:36:33]     "pilotErrorDiag": "",
[2025-11-26 20:36:33]  *** Listing of results directory ***
[2025-11-26 20:36:33] total 1313044
[2025-11-26 20:36:33] -rw-r--r--. 1 boincer umatlas    576529 Nov 25 11:48 pilot3.tar.gz
[2025-11-26 20:36:33] -rwx------. 1 boincer umatlas     36292 Nov 25 12:01 runpilot2-wrapper.sh
[2025-11-26 20:36:33] -rw-r--r--. 1 boincer umatlas      5112 Nov 25 12:02 queuedata.json
[2025-11-26 20:36:33] -rw-r--r--. 1 boincer umatlas       100 Nov 25 22:37 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 20:36:33] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 25 22:37 run_atlas
[2025-11-26 20:36:33] -rw-r--r--. 1 boincer umatlas       105 Nov 25 22:37 job.xml
[2025-11-26 20:36:33] -rw-r--r--. 2 boincer umatlas 411059454 Nov 25 22:37 EVNT.47483658._002347.pool.root.1
[2025-11-26 20:36:33] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 22:37 start_atlas.sh
[2025-11-26 20:36:33] drwxrwx--x. 2 boincer umatlas      4096 Nov 25 22:37 shared
[2025-11-26 20:36:33] -rw-r--r--. 2 boincer umatlas    590114 Nov 25 22:37 input.tar.gz
[2025-11-26 20:36:33] -rw-r--r--. 1 boincer umatlas         0 Nov 25 22:37 boinc_lockfile
[2025-11-26 20:36:33] -rw-r--r--. 1 boincer umatlas      2783 Nov 25 22:37 pandaJob.out
[2025-11-26 20:36:33] -rw-------. 1 boincer umatlas        57 Nov 25 22:37 setup.sh.local
[2025-11-26 20:36:33] -rw-------. 1 boincer umatlas    991877 Nov 25 22:38 agis_schedconf.cvmfs.json
[2025-11-26 20:36:33] drwx------. 5 boincer umatlas      4096 Nov 25 22:38 pilot3
[2025-11-26 20:36:33] -rw-r--r--. 1 boincer umatlas       533 Nov 26 20:09 boinc_task_state.xml
[2025-11-26 20:36:33] -rw-r--r--. 1 boincer umatlas      6885 Nov 26 20:31 init_data.xml
[2025-11-26 20:36:33] -rw-------. 1 boincer umatlas 907087472 Nov 26 20:33 HITS.47556161._003291.pool.root.1
[2025-11-26 20:36:33] -rw-------. 1 boincer umatlas      1072 Nov 26 20:34 memory_monitor_summary.json
[2025-11-26 20:36:33] -rw-------. 1 boincer umatlas   1516240 Nov 26 20:34 agis_ddmendpoints.agis.ALL.json
[2025-11-26 20:36:33] -rw-------. 1 boincer umatlas   2277950 Nov 26 20:34 log.47556161._003291.job.log.tgz.1
[2025-11-26 20:36:33] -rw-------. 1 boincer umatlas        95 Nov 26 20:35 pilot_heartbeat.json
[2025-11-26 20:36:33] -rw-------. 1 boincer umatlas      7944 Nov 26 20:35 heartbeat.json
[2025-11-26 20:36:33] -rw-------. 1 boincer umatlas      4824 Nov 26 20:36 pilotlog.txt
[2025-11-26 20:36:33] -rw-------. 1 boincer umatlas   8970220 Nov 26 20:36 log.47556161._003291.job.log.1
[2025-11-26 20:36:33] -rw-------. 1 boincer umatlas       353 Nov 26 20:36 output.list
[2025-11-26 20:36:33] -rw-r--r--. 1 boincer umatlas       620 Nov 26 20:36 runtime_log
[2025-11-26 20:36:33] -rw-------. 1 boincer umatlas  11264000 Nov 26 20:36 result.tar.gz
[2025-11-26 20:36:33] -rw-r--r--. 1 boincer umatlas      9343 Nov 26 20:36 runtime_log.err
[2025-11-26 20:36:33] -rw-------. 1 boincer umatlas       660 Nov 26 20:36 FsyNDmraBi8n9Rq4apOajLDm4fhM0noT9bVo0NGKDm0dJKDmOG4C9m.diag
[2025-11-26 20:36:33] -rw-r--r--. 1 boincer umatlas        29 Nov 26 20:36 wrapper_checkpoint.txt
[2025-11-26 20:36:33] -rw-r--r--. 1 boincer umatlas      8192 Nov 26 20:36 boinc_mmap_file
[2025-11-26 20:36:33] -rw-r--r--. 1 boincer umatlas     21648 Nov 26 20:36 stderr.txt
[2025-11-26 20:36:33] HITS file was successfully produced:
[2025-11-26 20:36:33] -rw-------. 1 boincer umatlas 907087472 Nov 26 20:33 shared/HITS.pool.root.1
[2025-11-26 20:36:33]  *** Contents of shared directory: ***
[2025-11-26 20:36:33] total 1298860
[2025-11-26 20:36:33] -rw-r--r--. 2 boincer umatlas 411059454 Nov 25 22:37 ATLAS.root_0
[2025-11-26 20:36:33] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 22:37 start_atlas.sh
[2025-11-26 20:36:33] -rw-r--r--. 2 boincer umatlas    590114 Nov 25 22:37 input.tar.gz
[2025-11-26 20:36:33] -rw-------. 1 boincer umatlas 907087472 Nov 26 20:33 HITS.pool.root.1
[2025-11-26 20:36:33] -rw-------. 1 boincer umatlas  11264000 Nov 26 20:36 result.tar.gz
20:36:34 (4028530): run_atlas exited; CPU time 262054.010317
20:36:34 (4028530): called boinc_finish(0)

</stderr_txt>
]]>

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