Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:12:28 (2109825): wrapper (7.7.26015): starting
00:12:28 (2109825): wrapper: running run_atlas (--nthreads 8)
[2025-11-26 00:12:28] Arguments: --nthreads 8
[2025-11-26 00:12:28] Threads: 8
[2025-11-26 00:12:28] Checking for CVMFS
[2025-11-26 00:12:28] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 00:12:29] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 00:12:29] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 00:12:30] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 00:12:30] 2.13.3.0 9366 29568 325536 153310 2 63 28052886 32935937 25813 16776704 0 196342286 99.815 93975231 32999 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-26 00:12:30] CVMFS is ok
[2025-11-26 00:12:30] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 00:12:30] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 00:12:30] Further information can be found at the LHC@home message board.
[2025-11-26 00:12:30] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 00:12:30] Checking for apptainer binary...
[2025-11-26 00:12:30] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 00:12:30] Running /usr/bin/apptainer --version
[2025-11-26 00:12:31] apptainer version 1.4.4-1.el9
[2025-11-26 00:12:31] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 00:12:31] c-6-2.aglt2.org
[2025-11-26 00:12:31] apptainer works
[2025-11-26 00:12:31] Set ATHENA_PROC_NUMBER=8
[2025-11-26 00:12:31] Set ATHENA_CORE_NUMBER=8
[2025-11-26 00:12:31] Starting ATLAS job with PandaID=6897863862
[2025-11-26 00:12:31] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 20:11:07]  *** The last 200 lines of the pilot log: ***
[2025-11-26 20:11:07] 2025-11-27 01:10:32,581 | INFO     | monitor loop #4420: job 0:6897863862 is in state 'finished'
[2025-11-26 20:11:07] 2025-11-27 01:10:32,582 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 20:11:07] 2025-11-27 01:10:33,020 | INFO     | time since job start (71812s) is within the limit (172800.0s)
[2025-11-26 20:11:07] 2025-11-27 01:10:34,332 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-26 20:11:07] 2025-11-27 01:10:34,338 | INFO     | found 20 cores (10 cores per socket, 2 sockets) HT, CPU MHz: 2599.9393250000003
[2025-11-26 20:11:07] 2025-11-27 01:10:34,345 | INFO     | using path: /tmp/boinchome/slots/4/PanDA_Pilot-6897863862/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 20:11:07] 2025-11-27 01:10:34,346 | INFO     | extracted standard info from prmon json
[2025-11-26 20:11:07] 2025-11-27 01:10:34,346 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 20:11:07] 2025-11-27 01:10:34,346 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 20:11:07] 2025-11-27 01:10:34,368 | INFO     | fitting pss+swap vs Time
[2025-11-26 20:11:07] 2025-11-27 01:10:34,370 | INFO     | sum of square deviations: 503026131181.11914
[2025-11-26 20:11:07] 2025-11-27 01:10:34,407 | INFO     | sum of deviations: 3696897562774.5576
[2025-11-26 20:11:07] 2025-11-27 01:10:34,407 | INFO     | mean x: 1764169969.04
[2025-11-26 20:11:07] 2025-11-27 01:10:34,407 | INFO     | mean y: 2921357.094468085
[2025-11-26 20:11:07] 2025-11-27 01:10:34,408 | INFO     | intersect: -12962519709.655508
[2025-11-26 20:11:07] 2025-11-27 01:10:34,409 | INFO     | chi2: 10.742956168812393
[2025-11-26 20:11:07] 2025-11-27 01:10:34,411 | INFO     | sum of square deviations: 496632160738.1882
[2025-11-26 20:11:07] 2025-11-27 01:10:34,448 | INFO     | sum of deviations: 4049192073466.28
[2025-11-26 20:11:07] 2025-11-27 01:10:34,448 | INFO     | mean x: 1764169816.5444446
[2025-11-26 20:11:07] 2025-11-27 01:10:34,448 | INFO     | mean y: 2929757.9273504275
[2025-11-26 20:11:07] 2025-11-27 01:10:34,448 | INFO     | intersect: -14380879834.230894
[2025-11-26 20:11:07] 2025-11-27 01:10:34,450 | INFO     | chi2: 8.237393973379547
[2025-11-26 20:11:07] 2025-11-27 01:10:34,450 | INFO     | current chi2=8.237393973379547 (change=23.32283736488362 %)
[2025-11-26 20:11:07] 2025-11-27 01:10:34,450 | INFO     | right removable region: 1169
[2025-11-26 20:11:07] 2025-11-27 01:10:34,452 | INFO     | sum of square deviations: 496631415318.1893
[2025-11-26 20:11:07] 2025-11-27 01:10:34,489 | INFO     | sum of deviations: 3202005369376.2295
[2025-11-26 20:11:07] 2025-11-27 01:10:34,489 | INFO     | mean x: 1764170121.5444446
[2025-11-26 20:11:07] 2025-11-27 01:10:34,489 | INFO     | mean y: 2933158.2743589743
[2025-11-26 20:11:07] 2025-11-27 01:10:34,489 | INFO     | intersect: -11371462474.871838
[2025-11-26 20:11:07] 2025-11-27 01:10:34,491 | INFO     | chi2: 6.233104155520033
[2025-11-26 20:11:07] 2025-11-27 01:10:34,491 | INFO     | current chi2=6.233104155520033 (change=41.979618481408295 %)
[2025-11-26 20:11:07] 2025-11-27 01:10:34,493 | INFO     | sum of square deviations: 490291119080.21124
[2025-11-26 20:11:07] 2025-11-27 01:10:34,526 | INFO     | sum of deviations: 2830571099526.8945
[2025-11-26 20:11:07] 2025-11-27 01:10:34,526 | INFO     | mean x: 1764170274.048927
[2025-11-26 20:11:07] 2025-11-27 01:10:34,526 | INFO     | mean y: 2942089.756223176
[2025-11-26 20:11:07] 2025-11-27 01:10:34,526 | INFO     | intersect: -10182046375.33238
[2025-11-26 20:11:07] 2025-11-27 01:10:34,528 | INFO     | chi2: 3.812809871663392
[2025-11-26 20:11:07] 2025-11-27 01:10:34,528 | INFO     | current chi2=3.812809871663392 (change=38.82967817428866 %)
[2025-11-26 20:11:07] 2025-11-27 01:10:34,530 | INFO     | sum of square deviations: 484005364989.1991
[2025-11-26 20:11:07] 2025-11-27 01:10:34,564 | INFO     | sum of deviations: 2709852021538.5923
[2025-11-26 20:11:07] 2025-11-27 01:10:34,564 | INFO     | mean x: 1764170426.5491378
[2025-11-26 20:11:07] 2025-11-27 01:10:34,564 | INFO     | mean y: 2945015.393103448
[2025-11-26 20:11:07] 2025-11-27 01:10:34,564 | INFO     | intersect: -9874302516.417759
[2025-11-26 20:11:07] 2025-11-27 01:10:34,566 | INFO     | chi2: 3.560106383141761
[2025-11-26 20:11:07] 2025-11-27 01:10:34,566 | INFO     | current chi2=3.560106383141761 (change=6.62774953452859 %)
[2025-11-26 20:11:07] 2025-11-27 01:10:34,566 | INFO     | left removable region: 30
[2025-11-26 20:11:07] 2025-11-27 01:10:34,568 | INFO     | sum of square deviations: 458192345300.8392
[2025-11-26 20:11:07] 2025-11-27 01:10:34,603 | INFO     | sum of deviations: 2928291593095.4824
[2025-11-26 20:11:07] 2025-11-27 01:10:34,603 | INFO     | mean x: 1764170701.0526779
[2025-11-26 20:11:07] 2025-11-27 01:10:34,604 | INFO     | mean y: 2959008.825285338
[2025-11-26 20:11:07] 2025-11-27 01:10:34,604 | INFO     | intersect: -11271795547.115698
[2025-11-26 20:11:07] 2025-11-27 01:10:34,605 | INFO     | chi2: 0.7755587536786436
[2025-11-26 20:11:07] 2025-11-27 01:10:34,605 | INFO     | current memory leak: 6.39 B/s (using 1139 data points, chi2=0.78)
[2025-11-26 20:11:07] 2025-11-27 01:10:34,607 | INFO     | could have reported an average CPU frequency of 2599 MHz (43 samples)
[2025-11-26 20:11:07] 2025-11-27 01:10:34,607 | INFO     | ..............................
[2025-11-26 20:11:07] 2025-11-27 01:10:34,607 | INFO     | . Timing measurements:
[2025-11-26 20:11:07] 2025-11-27 01:10:34,607 | INFO     | . get job = 0 s
[2025-11-26 20:11:07] 2025-11-27 01:10:34,607 | INFO     | . initial setup = 6 s
[2025-11-26 20:11:07] 2025-11-27 01:10:34,607 | INFO     | . payload setup = 41 s
[2025-11-26 20:11:07] 2025-11-27 01:10:34,607 | INFO     | . stage-in = 0 s
[2025-11-26 20:11:07] 2025-11-27 01:10:34,607 | INFO     | . payload execution = 71688 s
[2025-11-26 20:11:07] 2025-11-27 01:10:34,608 | INFO     | . stage-out = 4 s
[2025-11-26 20:11:07] 2025-11-27 01:10:34,608 | INFO     | . log creation = 0 s
[2025-11-26 20:11:07] 2025-11-27 01:10:34,608 | INFO     | ..............................
[2025-11-26 20:11:07] 2025-11-27 01:10:34,714 | INFO     | 
[2025-11-26 20:11:07] 2025-11-27 01:10:34,714 | INFO     | job summary report
[2025-11-26 20:11:07] 2025-11-27 01:10:34,714 | INFO     | --------------------------------------------------
[2025-11-26 20:11:07] 2025-11-27 01:10:34,715 | INFO     | PanDA job id: 6897863862
[2025-11-26 20:11:07] 2025-11-27 01:10:34,715 | INFO     | task id: 47556161
[2025-11-26 20:11:07] 2025-11-27 01:10:34,715 | INFO     | errors: (none)
[2025-11-26 20:11:07] 2025-11-27 01:10:34,715 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 20:11:07] 2025-11-27 01:10:34,715 | INFO     | pilot state: finished 
[2025-11-26 20:11:07] 2025-11-27 01:10:34,715 | INFO     | transexitcode: 0
[2025-11-26 20:11:07] 2025-11-27 01:10:34,715 | INFO     | exeerrorcode: 0
[2025-11-26 20:11:07] 2025-11-27 01:10:34,715 | INFO     | exeerrordiag: 
[2025-11-26 20:11:07] 2025-11-27 01:10:34,715 | INFO     | exitcode: 0
[2025-11-26 20:11:07] 2025-11-27 01:10:34,715 | INFO     | exitmsg: OK
[2025-11-26 20:11:07] 2025-11-27 01:10:34,716 | INFO     | cpuconsumptiontime: 302252 s
[2025-11-26 20:11:07] 2025-11-27 01:10:34,716 | INFO     | nevents: 1000
[2025-11-26 20:11:07] 2025-11-27 01:10:34,716 | INFO     | neventsw: 0
[2025-11-26 20:11:07] 2025-11-27 01:10:34,716 | INFO     | pid: 2135282
[2025-11-26 20:11:07] 2025-11-27 01:10:34,716 | INFO     | pgrp: 2135282
[2025-11-26 20:11:07] 2025-11-27 01:10:34,716 | INFO     | corecount: 8
[2025-11-26 20:11:07] 2025-11-27 01:10:34,716 | INFO     | event service: False
[2025-11-26 20:11:07] 2025-11-27 01:10:34,716 | INFO     | sizes: {0: 2283437, 1: 2284122, 2: 2284122, 3: 2284349, 14: 2284349, 25: 2284377, 32: 2284795, 36: 2284823, 71734: 2343482, 71739: 2352476, 71741: 2352532, 71748: 
[2025-11-26 20:11:07] 2025-11-27 01:10:34,716 | INFO     | --------------------------------------------------
[2025-11-26 20:11:07] 2025-11-27 01:10:34,716 | INFO     | 
[2025-11-26 20:11:07] 2025-11-27 01:10:34,717 | INFO     | executing command: ls -lF /tmp/boinchome/slots/4
[2025-11-26 20:11:07] 2025-11-27 01:10:34,748 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 20:11:07] 2025-11-27 01:10:34,748 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 20:11:07] 2025-11-27 01:10:34,748 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 20:11:07] 2025-11-27 01:10:34,748 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 20:11:07] 2025-11-27 01:10:34,749 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 20:11:07] 2025-11-27 01:10:34,749 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 20:11:07] 2025-11-27 01:10:34,749 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 20:11:07] 2025-11-27 01:10:34,749 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 20:11:07] 2025-11-27 01:10:34,749 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 20:11:07] 2025-11-27 01:10:34,749 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 20:11:07] 2025-11-27 01:10:34,749 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 20:11:07] 2025-11-27 01:10:34,749 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 20:11:07] 2025-11-27 01:10:34,750 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 20:11:07] 2025-11-27 01:10:34,750 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 20:11:07] 2025-11-27 01:10:34,750 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 20:11:07] 2025-11-27 01:10:34,750 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 20:11:07] 2025-11-27 01:10:34,750 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 20:11:07] 2025-11-27 01:10:34,750 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 20:11:07] 2025-11-27 01:10:34,750 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 20:11:07] 2025-11-27 01:10:34,750 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 20:11:07] 2025-11-27 01:10:34,750 | INFO     | job 6897863862 has completed (purged errors)
[2025-11-26 20:11:07] 2025-11-27 01:10:34,751 | INFO     | overall cleanup function is called
[2025-11-26 20:11:07] 2025-11-27 01:10:35,766 | INFO     | --- collectZombieJob: --- 10, [2135282]
[2025-11-26 20:11:07] 2025-11-27 01:10:35,767 | INFO     | zombie collector waiting for pid 2135282
[2025-11-26 20:11:07] 2025-11-27 01:10:35,768 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 20:11:07] 2025-11-27 01:10:35,768 | INFO     | collected zombie processes
[2025-11-26 20:11:07] 2025-11-27 01:10:35,768 | INFO     | will attempt to kill all subprocesses of pid=2135282
[2025-11-26 20:11:07] 2025-11-27 01:10:36,255 | INFO     | process IDs to be killed: [2135282] (in reverse order)
[2025-11-26 20:11:07] 2025-11-27 01:10:36,389 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 20:11:07] 2025-11-27 01:10:36,389 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 20:11:07] 2025-11-27 01:10:36,404 | INFO     | did not find any defunct processes belonging to 2135282
[2025-11-26 20:11:07] 2025-11-27 01:10:36,419 | INFO     | did not find any defunct processes belonging to 2135282
[2025-11-26 20:11:07] 2025-11-27 01:10:36,420 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 20:11:07] 2025-11-27 01:10:36,421 | INFO     | ready for new job
[2025-11-26 20:11:07] 2025-11-27 01:10:36,421 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 20:11:07] 2025-11-27 01:10:36,425 | INFO     | ***************************************
[2025-11-26 20:11:07] 2025-11-27 01:10:36,426 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 20:11:07] 2025-11-27 01:10:36,426 | INFO     | ***************************************
[2025-11-26 20:11:07] 2025-11-27 01:10:36,426 | INFO     | 
[2025-11-26 20:11:07] 2025-11-27 01:10:36,428 | INFO     | architecture information:
[2025-11-26 20:11:07] 2025-11-27 01:10:36,428 | INFO     | executing command: cat /etc/os-release
[2025-11-26 20:11:07] 2025-11-27 01:10:36,444 | INFO     | cat /etc/os-release:
[2025-11-26 20:11:07] NAME="CentOS Linux"
[2025-11-26 20:11:07] VERSION="7 (Core)"
[2025-11-26 20:11:07] ID="centos"
[2025-11-26 20:11:07] ID_LIKE="rhel fedora"
[2025-11-26 20:11:07] VERSION_ID="7"
[2025-11-26 20:11:07] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 20:11:07] ANSI_COLOR="0;31"
[2025-11-26 20:11:07] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 20:11:07] HOME_URL="https://www.centos.org/"
[2025-11-26 20:11:07] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 20:11:07] 
[2025-11-26 20:11:07] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 20:11:07] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 20:11:07] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 20:11:07] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 20:11:07] 
[2025-11-26 20:11:07] 2025-11-27 01:10:36,445 | INFO     | ***************************************
[2025-11-26 20:11:07] 2025-11-27 01:10:36,948 | INFO     | executing command: df -mP /tmp/boinchome/slots/4
[2025-11-26 20:11:07] 2025-11-27 01:10:36,969 | INFO     | sufficient remaining disk space (72402075648 B)
[2025-11-26 20:11:07] 2025-11-27 01:10:36,969 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 20:11:07] 2025-11-27 01:10:36,969 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 20:11:07] 2025-11-27 01:10:36,969 | INFO     | update_server=False
[2025-11-26 20:11:07] 2025-11-27 01:10:36,970 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 20:11:07] 2025-11-27 01:10:36,970 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 20:11:07] 2025-11-27 01:10:36,970 | INFO     | aborting loop
[2025-11-26 20:11:07] 2025-11-27 01:10:37,239 | INFO     | all data control threads have been joined
[2025-11-26 20:11:07] 2025-11-27 01:10:37,765 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 20:11:07] 2025-11-27 01:10:37,976 | INFO     | [job] retrieve thread has finished
[2025-11-26 20:11:07] 2025-11-27 01:10:37,977 | INFO     | [job] job monitor thread has finished
[2025-11-26 20:11:07] 2025-11-27 01:10:37,993 | INFO     | [job] validate thread has finished
[2025-11-26 20:11:07] 2025-11-27 01:10:38,020 | INFO     | [payload] failed_post thread has finished
[2025-11-26 20:11:07] 2025-11-27 01:10:38,112 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 20:11:07] 2025-11-27 01:10:38,202 | INFO     | all payload control threads have been joined
[2025-11-26 20:11:07] 2025-11-27 01:10:38,223 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 20:11:07] 2025-11-27 01:10:38,245 | INFO     | [data] control thread has finished
[2025-11-26 20:11:07] 2025-11-27 01:10:38,257 | INFO     | all job control threads have been joined
[2025-11-26 20:11:07] 2025-11-27 01:10:38,335 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 20:11:07] 2025-11-27 01:10:38,478 | INFO     | [data] copytool_in thread has finished
[2025-11-26 20:11:07] 2025-11-27 01:10:38,708 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 20:11:07] 2025-11-27 01:10:39,057 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 20:11:07] 2025-11-27 01:10:39,154 | INFO     | [payload] validate_post thread has finished
[2025-11-26 20:11:07] 2025-11-27 01:10:39,207 | INFO     | [payload] control thread has finished
[2025-11-26 20:11:07] 2025-11-27 01:10:39,261 | INFO     | [job] control thread has finished
[2025-11-26 20:11:07] 2025-11-27 01:10:39,728 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 20:11:07] 2025-11-27 01:10:40,344 | INFO     | [data] copytool_out thread has finished
[2025-11-26 20:11:07] 2025-11-27 01:10:40,733 | INFO     | [job] queue monitor thread has finished
[2025-11-26 20:11:07] 2025-11-27 01:10:41,774 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 20:11:07] 2025-11-27 01:10:48,641 | INFO     | [monitor] cgroup control has ended
[2025-11-26 20:11:07] 2025-11-27 01:10:50,627 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140438015739712)>', '<ExcThread(monitor, started 140437302011648)>']
[2025-11-26 20:11:07] 2025-11-27 01:10:55,653 | INFO     | all workflow threads have been joined
[2025-11-26 20:11:07] 2025-11-27 01:10:55,654 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 20:11:07] 2025-11-27 01:10:55,654 | INFO     | traces error code: 0
[2025-11-26 20:11:07] 2025-11-27 01:10:55,654 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 20:11:07] 2025-11-27 01:11:06,767 | INFO     | PID=2117769 has CPU usage=10.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-11-26 20:11:07] 2025-11-27 01:11:06,768 | INFO     | .. there are 43 such processes running
[2025-11-26 20:11:07] 2025-11-27 01:11:06,768 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 20:11:07] 2025-11-27 01:11:06,768 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 20:11:07] 2025-11-27 01:11:06,769 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 20:11:07] 2025-11-27 01:11:06,769 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 20:11:07] 2025-11-27 01:11:06,769 | INFO     | [monitor] control thread has ended
[2025-11-26 20:11:07] 2025-11-27 01:11:06,913 [wrapper] ==== pilot stdout END ====
[2025-11-26 20:11:07] 2025-11-27 01:11:06,917 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 20:11:07] 2025-11-27 01:11:06,925 [wrapper] pilotpid: 2117769
[2025-11-26 20:11:07] 2025-11-27 01:11:06,938 [wrapper] Pilot exit status: 0
[2025-11-26 20:11:07] 2025-11-27 01:11:06,955 [wrapper] pandaids: 6897863862
[2025-11-26 20:11:07] 2025-11-27 01:11:07,123 [wrapper] cleanup supervisor_pilot 2055396 2117770
[2025-11-26 20:11:07] 2025-11-27 01:11:07,165 [wrapper] Test setup, not cleaning
[2025-11-26 20:11:07] 2025-11-27 01:11:07,168 [wrapper] apfmon messages muted
[2025-11-26 20:11:07] 2025-11-27 01:11:07,171 [wrapper] ==== wrapper stdout END ====
[2025-11-26 20:11:07] 2025-11-27 01:11:07,174 [wrapper] ==== wrapper stderr END ====
[2025-11-26 20:11:07]  *** Error codes and diagnostics ***
[2025-11-26 20:11:07]     "exeErrorCode": 0,
[2025-11-26 20:11:07]     "exeErrorDiag": "",
[2025-11-26 20:11:07]     "pilotErrorCode": 0,
[2025-11-26 20:11:07]     "pilotErrorDiag": "",
[2025-11-26 20:11:07]  *** Listing of results directory ***
[2025-11-26 20:11:07] total 1321752
[2025-11-26 20:11:07] -rw-r--r--. 1 boincer umatlas    576529 Nov 25 11:48 pilot3.tar.gz
[2025-11-26 20:11:07] -rwx------. 1 boincer umatlas     36292 Nov 25 12:01 runpilot2-wrapper.sh
[2025-11-26 20:11:07] -rw-r--r--. 1 boincer umatlas      5112 Nov 25 12:02 queuedata.json
[2025-11-26 20:11:07] -rw-r--r--. 1 boincer umatlas       100 Nov 26 00:12 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 20:11:07] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 26 00:12 run_atlas
[2025-11-26 20:11:07] -rw-r--r--. 1 boincer umatlas       105 Nov 26 00:12 job.xml
[2025-11-26 20:11:07] -rw-r--r--. 2 boincer umatlas 411575638 Nov 26 00:12 EVNT.47483658._002336.pool.root.1
[2025-11-26 20:11:07] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 00:12 start_atlas.sh
[2025-11-26 20:11:07] drwxrwx--x. 2 boincer umatlas      4096 Nov 26 00:12 shared
[2025-11-26 20:11:07] -rw-r--r--. 2 boincer umatlas    590104 Nov 26 00:12 input.tar.gz
[2025-11-26 20:11:07] -rw-r--r--. 1 boincer umatlas         0 Nov 26 00:12 boinc_lockfile
[2025-11-26 20:11:07] -rw-r--r--. 1 boincer umatlas      2786 Nov 26 00:12 pandaJob.out
[2025-11-26 20:11:07] -rw-------. 1 boincer umatlas        57 Nov 26 00:12 setup.sh.local
[2025-11-26 20:11:07] -rw-------. 1 boincer umatlas    991877 Nov 26 00:13 agis_schedconf.cvmfs.json
[2025-11-26 20:11:07] drwx------. 5 boincer umatlas      4096 Nov 26 00:13 pilot3
[2025-11-26 20:11:07] -rw-r--r--. 1 boincer umatlas       533 Nov 26 19:58 boinc_task_state.xml
[2025-11-26 20:11:07] -rw-------. 1 boincer umatlas 914997634 Nov 26 20:09 HITS.47556161._003182.pool.root.1
[2025-11-26 20:11:07] -rw-------. 1 boincer umatlas      1058 Nov 26 20:10 memory_monitor_summary.json
[2025-11-26 20:11:07] -rw-------. 1 boincer umatlas   1516240 Nov 26 20:10 agis_ddmendpoints.agis.ALL.json
[2025-11-26 20:11:07] -rw-------. 1 boincer umatlas   2276728 Nov 26 20:10 log.47556161._003182.job.log.tgz.1
[2025-11-26 20:11:07] -rw-------. 1 boincer umatlas        95 Nov 26 20:10 pilot_heartbeat.json
[2025-11-26 20:11:07] -rw-------. 1 boincer umatlas      8629 Nov 26 20:10 heartbeat.json
[2025-11-26 20:11:07] -rw-r--r--. 1 boincer umatlas      6657 Nov 26 20:10 init_data.xml
[2025-11-26 20:11:07] -rw-r--r--. 1 boincer umatlas        29 Nov 26 20:11 wrapper_checkpoint.txt
[2025-11-26 20:11:07] -rw-r--r--. 1 boincer umatlas      8192 Nov 26 20:11 boinc_mmap_file
[2025-11-26 20:11:07] -rw-------. 1 boincer umatlas       824 Nov 26 20:11 pilotlog.txt
[2025-11-26 20:11:07] -rw-------. 1 boincer umatlas   9215372 Nov 26 20:11 log.47556161._003182.job.log.1
[2025-11-26 20:11:07] -rw-------. 1 boincer umatlas       353 Nov 26 20:11 output.list
[2025-11-26 20:11:07] -rw-r--r--. 1 boincer umatlas       620 Nov 26 20:11 runtime_log
[2025-11-26 20:11:07] -rw-------. 1 boincer umatlas  11509760 Nov 26 20:11 result.tar.gz
[2025-11-26 20:11:07] -rw-r--r--. 1 boincer umatlas      9328 Nov 26 20:11 runtime_log.err
[2025-11-26 20:11:07] -rw-------. 1 boincer umatlas       657 Nov 26 20:11 LOLNDmraBi8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmfdJKDmplmYym.diag
[2025-11-26 20:11:07] -rw-r--r--. 1 boincer umatlas     21375 Nov 26 20:11 stderr.txt
[2025-11-26 20:11:07] HITS file was successfully produced:
[2025-11-26 20:11:07] -rw-------. 1 boincer umatlas 914997634 Nov 26 20:09 shared/HITS.pool.root.1
[2025-11-26 20:11:07]  *** Contents of shared directory: ***
[2025-11-26 20:11:07] total 1307332
[2025-11-26 20:11:07] -rw-r--r--. 2 boincer umatlas 411575638 Nov 26 00:12 ATLAS.root_0
[2025-11-26 20:11:07] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 00:12 start_atlas.sh
[2025-11-26 20:11:07] -rw-r--r--. 2 boincer umatlas    590104 Nov 26 00:12 input.tar.gz
[2025-11-26 20:11:07] -rw-------. 1 boincer umatlas 914997634 Nov 26 20:09 HITS.pool.root.1
[2025-11-26 20:11:07] -rw-------. 1 boincer umatlas  11509760 Nov 26 20:11 result.tar.gz
20:11:08 (2109825): run_atlas exited; CPU time 305413.507231
20:11:08 (2109825): called boinc_finish(0)

</stderr_txt>
]]>

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