Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
22:31:12 (1627965): wrapper (7.7.26015): starting
22:31:12 (1627965): wrapper: running run_atlas (--nthreads 8)
[2025-11-25 22:31:12] Arguments: --nthreads 8
[2025-11-25 22:31:12] Threads: 8
[2025-11-25 22:31:12] Checking for CVMFS
[2025-11-25 22:31:12] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 22:31:12] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 22:31:12] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 22:31:13] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 22:31:13] 2.13.2.0 6751 33808 244424 153307 3 308 31407064 40960000 22727 16776704 0 100593646 99.582 104288166 36700 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-25 22:31:13] CVMFS is ok
[2025-11-25 22:31:13] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 22:31:13] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 22:31:13] Further information can be found at the LHC@home message board.
[2025-11-25 22:31:13] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 22:31:13] Checking for apptainer binary...
[2025-11-25 22:31:13] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 22:31:13] Running /usr/bin/apptainer --version
[2025-11-25 22:31:13] apptainer version 1.4.4-1.el9
[2025-11-25 22:31:13] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 22:31:13] c-212-7.aglt2.org
[2025-11-25 22:31:13] apptainer works
[2025-11-25 22:31:13] Set ATHENA_PROC_NUMBER=8
[2025-11-25 22:31:13] Set ATHENA_CORE_NUMBER=8
[2025-11-25 22:31:13] Starting ATLAS job with PandaID=6897488853
[2025-11-25 22:31:13] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/6 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 00:07:45]  *** The last 200 lines of the pilot log: ***
[2025-11-27 00:07:45] 2025-11-27 05:07:12,129 | INFO     | fitting pss+swap vs Time
[2025-11-27 00:07:45] 2025-11-27 05:07:12,131 | INFO     | sum of square deviations: 1065450928082.8124
[2025-11-27 00:07:45] 2025-11-27 05:07:12,180 | INFO     | sum of deviations: 6647433177638.069
[2025-11-27 00:07:45] 2025-11-27 05:07:12,181 | INFO     | mean x: 1764173979.4168324
[2025-11-27 00:07:45] 2025-11-27 05:07:12,181 | INFO     | mean y: 2850249.0046388335
[2025-11-27 00:07:45] 2025-11-27 05:07:12,181 | INFO     | intersect: -11003971682.253496
[2025-11-27 00:07:45] 2025-11-27 05:07:12,183 | INFO     | chi2: 16.13197563510118
[2025-11-27 00:07:45] 2025-11-27 05:07:12,184 | INFO     | sum of square deviations: 1054895363632.7415
[2025-11-27 00:07:45] 2025-11-27 05:07:12,231 | INFO     | sum of deviations: 7198287143042.941
[2025-11-27 00:07:45] 2025-11-27 05:07:12,231 | INFO     | mean x: 1764173826.9215426
[2025-11-27 00:07:45] 2025-11-27 05:07:12,231 | INFO     | mean y: 2858207.236702128
[2025-11-27 00:07:45] 2025-11-27 05:07:12,231 | INFO     | intersect: -12035330805.833347
[2025-11-27 00:07:45] 2025-11-27 05:07:12,233 | INFO     | chi2: 12.485531815682746
[2025-11-27 00:07:45] 2025-11-27 05:07:12,233 | INFO     | current chi2=12.485531815682746 (change=22.603826722154384 %)
[2025-11-27 00:07:45] 2025-11-27 05:07:12,233 | INFO     | right removable region: 1503
[2025-11-27 00:07:45] 2025-11-27 05:07:12,235 | INFO     | sum of square deviations: 1054894059452.7426
[2025-11-27 00:07:45] 2025-11-27 05:07:12,285 | INFO     | sum of deviations: 6051457481712.908
[2025-11-27 00:07:45] 2025-11-27 05:07:12,285 | INFO     | mean x: 1764174131.9215426
[2025-11-27 00:07:45] 2025-11-27 05:07:12,285 | INFO     | mean y: 2858857.6602393617
[2025-11-27 00:07:45] 2025-11-27 05:07:12,286 | INFO     | intersect: -10117422562.06772
[2025-11-27 00:07:45] 2025-11-27 05:07:12,287 | INFO     | chi2: 11.93924779055063
[2025-11-27 00:07:45] 2025-11-27 05:07:12,287 | INFO     | current chi2=11.93924779055063 (change=25.99016970635447 %)
[2025-11-27 00:07:45] 2025-11-27 05:07:12,289 | INFO     | sum of square deviations: 1044407145622.6047
[2025-11-27 00:07:45] 2025-11-27 05:07:12,333 | INFO     | sum of deviations: 5532492933884.695
[2025-11-27 00:07:45] 2025-11-27 05:07:12,333 | INFO     | mean x: 1764174284.426284
[2025-11-27 00:07:45] 2025-11-27 05:07:12,333 | INFO     | mean y: 2866404.703135424
[2025-11-27 00:07:45] 2025-11-27 05:07:12,333 | INFO     | intersect: -9342417954.598225
[2025-11-27 00:07:45] 2025-11-27 05:07:12,335 | INFO     | chi2: 8.885985664873626
[2025-11-27 00:07:45] 2025-11-27 05:07:12,335 | INFO     | current chi2=8.885985664873626 (change=25.57332069189083 %)
[2025-11-27 00:07:45] 2025-11-27 05:07:12,336 | INFO     | sum of square deviations: 1033989954029.899
[2025-11-27 00:07:45] 2025-11-27 05:07:12,404 | INFO     | sum of deviations: 4988617795857.819
[2025-11-27 00:07:45] 2025-11-27 05:07:12,404 | INFO     | mean x: 1764174436.9310575
[2025-11-27 00:07:45] 2025-11-27 05:07:12,404 | INFO     | mean y: 2874366.124497992
[2025-11-27 00:07:45] 2025-11-27 05:07:12,404 | INFO     | intersect: -8508612575.08928
[2025-11-27 00:07:45] 2025-11-27 05:07:12,410 | INFO     | chi2: 5.553673540906263
[2025-11-27 00:07:45] 2025-11-27 05:07:12,410 | INFO     | current chi2=5.553673540906263 (change=37.50075961904846 %)
[2025-11-27 00:07:45] 2025-11-27 05:07:12,412 | INFO     | sum of square deviations: 1023642433893.866
[2025-11-27 00:07:45] 2025-11-27 05:07:12,526 | INFO     | sum of deviations: 4736100286713.295
[2025-11-27 00:07:45] 2025-11-27 05:07:12,526 | INFO     | mean x: 1764174589.4345198
[2025-11-27 00:07:45] 2025-11-27 05:07:12,527 | INFO     | mean y: 2878084.515782404
[2025-11-27 00:07:45] 2025-11-27 05:07:12,527 | INFO     | intersect: -8159452336.908932
[2025-11-27 00:07:45] 2025-11-27 05:07:12,528 | INFO     | chi2: 4.804321385477834
[2025-11-27 00:07:45] 2025-11-27 05:07:12,528 | INFO     | current chi2=4.804321385477834 (change=13.492909691377847 %)
[2025-11-27 00:07:45] 2025-11-27 05:07:12,528 | INFO     | left removable region: 40
[2025-11-27 00:07:45] 2025-11-27 05:07:12,530 | INFO     | sum of square deviations: 970949113505.3203
[2025-11-27 00:07:45] 2025-11-27 05:07:12,574 | INFO     | sum of deviations: 5079681157896.276
[2025-11-27 00:07:45] 2025-11-27 05:07:12,574 | INFO     | mean x: 1764175016.444976
[2025-11-27 00:07:45] 2025-11-27 05:07:12,574 | INFO     | mean y: 2890886.6431989064
[2025-11-27 00:07:45] 2025-11-27 05:07:12,575 | INFO     | intersect: -9226683007.208237
[2025-11-27 00:07:45] 2025-11-27 05:07:12,576 | INFO     | chi2: 0.8397817989348563
[2025-11-27 00:07:45] 2025-11-27 05:07:12,576 | INFO     | current memory leak: 5.23 B/s (using 1463 data points, chi2=0.84)
[2025-11-27 00:07:45] 2025-11-27 05:07:12,578 | INFO     | could have reported an average CPU frequency of 3030 MHz (54 samples)
[2025-11-27 00:07:45] 2025-11-27 05:07:12,578 | INFO     | ..............................
[2025-11-27 00:07:45] 2025-11-27 05:07:12,578 | INFO     | . Timing measurements:
[2025-11-27 00:07:45] 2025-11-27 05:07:12,578 | INFO     | . get job = 0 s
[2025-11-27 00:07:45] 2025-11-27 05:07:12,578 | INFO     | . initial setup = 4 s
[2025-11-27 00:07:45] 2025-11-27 05:07:12,578 | INFO     | . payload setup = 20 s
[2025-11-27 00:07:45] 2025-11-27 05:07:12,579 | INFO     | . stage-in = 0 s
[2025-11-27 00:07:45] 2025-11-27 05:07:12,579 | INFO     | . payload execution = 92040 s
[2025-11-27 00:07:45] 2025-11-27 05:07:12,579 | INFO     | . stage-out = 6 s
[2025-11-27 00:07:45] 2025-11-27 05:07:12,579 | INFO     | . log creation = 1 s
[2025-11-27 00:07:45] 2025-11-27 05:07:12,579 | INFO     | ..............................
[2025-11-27 00:07:45] 2025-11-27 05:07:12,663 | INFO     | 
[2025-11-27 00:07:45] 2025-11-27 05:07:12,663 | INFO     | job summary report
[2025-11-27 00:07:45] 2025-11-27 05:07:12,663 | INFO     | --------------------------------------------------
[2025-11-27 00:07:45] 2025-11-27 05:07:12,663 | INFO     | PanDA job id: 6897488853
[2025-11-27 00:07:45] 2025-11-27 05:07:12,663 | INFO     | task id: 47556161
[2025-11-27 00:07:45] 2025-11-27 05:07:12,663 | INFO     | errors: (none)
[2025-11-27 00:07:45] 2025-11-27 05:07:12,663 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 00:07:45] 2025-11-27 05:07:12,663 | INFO     | pilot state: finished 
[2025-11-27 00:07:45] 2025-11-27 05:07:12,663 | INFO     | transexitcode: 0
[2025-11-27 00:07:45] 2025-11-27 05:07:12,663 | INFO     | exeerrorcode: 0
[2025-11-27 00:07:45] 2025-11-27 05:07:12,663 | INFO     | exeerrordiag: 
[2025-11-27 00:07:45] 2025-11-27 05:07:12,663 | INFO     | exitcode: 0
[2025-11-27 00:07:45] 2025-11-27 05:07:12,663 | INFO     | exitmsg: OK
[2025-11-27 00:07:45] 2025-11-27 05:07:12,664 | INFO     | cpuconsumptiontime: 210728 s
[2025-11-27 00:07:45] 2025-11-27 05:07:12,664 | INFO     | nevents: 1000
[2025-11-27 00:07:45] 2025-11-27 05:07:12,664 | INFO     | neventsw: 0
[2025-11-27 00:07:45] 2025-11-27 05:07:12,664 | INFO     | pid: 1649910
[2025-11-27 00:07:45] 2025-11-27 05:07:12,664 | INFO     | pgrp: 1649910
[2025-11-27 00:07:45] 2025-11-27 05:07:12,664 | INFO     | corecount: 8
[2025-11-27 00:07:45] 2025-11-27 05:07:12,664 | INFO     | event service: False
[2025-11-27 00:07:45] 2025-11-27 05:07:12,664 | INFO     | sizes: {0: 2284094, 1: 2284293, 12: 2284293, 18: 2284583, 22: 2284611, 92064: 2353150, 92071: 2362144, 92074: 2362200, 92085: 2362446}
[2025-11-27 00:07:45] 2025-11-27 05:07:12,664 | INFO     | --------------------------------------------------
[2025-11-27 00:07:45] 2025-11-27 05:07:12,664 | INFO     | 
[2025-11-27 00:07:45] 2025-11-27 05:07:12,664 | INFO     | executing command: ls -lF /tmp/boinchome/slots/6
[2025-11-27 00:07:45] 2025-11-27 05:07:12,683 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 00:07:45] 2025-11-27 05:07:12,683 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 00:07:45] 2025-11-27 05:07:12,683 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 00:07:45] 2025-11-27 05:07:12,683 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 00:07:45] 2025-11-27 05:07:12,683 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 00:07:45] 2025-11-27 05:07:12,683 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 00:07:45] 2025-11-27 05:07:12,683 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 00:07:45] 2025-11-27 05:07:12,683 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 00:07:45] 2025-11-27 05:07:12,684 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 00:07:45] 2025-11-27 05:07:12,684 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 00:07:45] 2025-11-27 05:07:12,684 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 00:07:45] 2025-11-27 05:07:12,684 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 00:07:45] 2025-11-27 05:07:12,684 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 00:07:45] 2025-11-27 05:07:12,684 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 00:07:45] 2025-11-27 05:07:12,684 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 00:07:45] 2025-11-27 05:07:12,684 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 00:07:45] 2025-11-27 05:07:12,684 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 00:07:45] 2025-11-27 05:07:12,684 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 00:07:45] 2025-11-27 05:07:12,684 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 00:07:45] 2025-11-27 05:07:12,684 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 00:07:45] 2025-11-27 05:07:12,685 | INFO     | job 6897488853 has completed (purged errors)
[2025-11-27 00:07:45] 2025-11-27 05:07:12,685 | INFO     | overall cleanup function is called
[2025-11-27 00:07:45] 2025-11-27 05:07:13,711 | INFO     | --- collectZombieJob: --- 10, [1649910]
[2025-11-27 00:07:45] 2025-11-27 05:07:13,711 | INFO     | zombie collector waiting for pid 1649910
[2025-11-27 00:07:45] 2025-11-27 05:07:13,711 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 00:07:45] 2025-11-27 05:07:13,711 | INFO     | collected zombie processes
[2025-11-27 00:07:45] 2025-11-27 05:07:13,711 | INFO     | will attempt to kill all subprocesses of pid=1649910
[2025-11-27 00:07:45] 2025-11-27 05:07:14,239 | INFO     | process IDs to be killed: [1649910] (in reverse order)
[2025-11-27 00:07:45] 2025-11-27 05:07:14,398 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 00:07:45] 2025-11-27 05:07:14,399 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 00:07:45] 2025-11-27 05:07:14,418 | INFO     | did not find any defunct processes belonging to 1649910
[2025-11-27 00:07:45] 2025-11-27 05:07:14,436 | INFO     | did not find any defunct processes belonging to 1649910
[2025-11-27 00:07:45] 2025-11-27 05:07:14,438 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 00:07:45] 2025-11-27 05:07:14,438 | INFO     | ready for new job
[2025-11-27 00:07:45] 2025-11-27 05:07:14,438 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 00:07:45] 2025-11-27 05:07:14,444 | INFO     | ***************************************
[2025-11-27 00:07:45] 2025-11-27 05:07:14,445 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 00:07:45] 2025-11-27 05:07:14,445 | INFO     | ***************************************
[2025-11-27 00:07:45] 2025-11-27 05:07:14,445 | INFO     | 
[2025-11-27 00:07:45] 2025-11-27 05:07:14,450 | INFO     | architecture information:
[2025-11-27 00:07:45] 2025-11-27 05:07:14,451 | INFO     | executing command: cat /etc/os-release
[2025-11-27 00:07:45] 2025-11-27 05:07:14,471 | INFO     | cat /etc/os-release:
[2025-11-27 00:07:45] NAME="CentOS Linux"
[2025-11-27 00:07:45] VERSION="7 (Core)"
[2025-11-27 00:07:45] ID="centos"
[2025-11-27 00:07:45] ID_LIKE="rhel fedora"
[2025-11-27 00:07:45] VERSION_ID="7"
[2025-11-27 00:07:45] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 00:07:45] ANSI_COLOR="0;31"
[2025-11-27 00:07:45] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 00:07:45] HOME_URL="https://www.centos.org/"
[2025-11-27 00:07:45] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 00:07:45] 
[2025-11-27 00:07:45] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 00:07:45] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 00:07:45] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 00:07:45] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 00:07:45] 
[2025-11-27 00:07:45] 2025-11-27 05:07:14,472 | INFO     | ***************************************
[2025-11-27 00:07:45] 2025-11-27 05:07:14,981 | INFO     | executing command: df -mP /tmp/boinchome/slots/6
[2025-11-27 00:07:45] 2025-11-27 05:07:15,004 | INFO     | sufficient remaining disk space (120452022272 B)
[2025-11-27 00:07:45] 2025-11-27 05:07:15,004 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 00:07:45] 2025-11-27 05:07:15,004 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 00:07:45] 2025-11-27 05:07:15,004 | INFO     | update_server=False
[2025-11-27 00:07:45] 2025-11-27 05:07:15,004 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 00:07:45] 2025-11-27 05:07:15,010 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 00:07:45] 2025-11-27 05:07:15,213 | INFO     | all data control threads have been joined
[2025-11-27 00:07:45] 2025-11-27 05:07:15,345 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-27 00:07:45] 2025-11-27 05:07:15,345 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-27 00:07:45] 2025-11-27 05:07:15,345 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 00:07:45] 2025-11-27 05:07:15,345 | INFO     | will abort loop
[2025-11-27 00:07:45] 2025-11-27 05:07:15,501 | INFO     | all payload control threads have been joined
[2025-11-27 00:07:45] 2025-11-27 05:07:15,901 | INFO     | all job control threads have been joined
[2025-11-27 00:07:45] 2025-11-27 05:07:16,009 | INFO     | [job] retrieve thread has finished
[2025-11-27 00:07:45] 2025-11-27 05:07:16,221 | INFO     | [data] control thread has finished
[2025-11-27 00:07:45] 2025-11-27 05:07:16,348 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 00:07:45] 2025-11-27 05:07:16,351 | INFO     | [job] job monitor thread has finished
[2025-11-27 00:07:45] 2025-11-27 05:07:16,373 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 00:07:45] 2025-11-27 05:07:16,377 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 00:07:45] 2025-11-27 05:07:16,393 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 00:07:45] 2025-11-27 05:07:16,485 | INFO     | [job] validate thread has finished
[2025-11-27 00:07:45] 2025-11-27 05:07:16,507 | INFO     | [payload] control thread has finished
[2025-11-27 00:07:45] 2025-11-27 05:07:16,907 | INFO     | [job] control thread has finished
[2025-11-27 00:07:45] 2025-11-27 05:07:16,974 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 00:07:45] 2025-11-27 05:07:17,018 | INFO     | [data] copytool_out thread has finished
[2025-11-27 00:07:45] 2025-11-27 05:07:17,360 | INFO     | [data] copytool_in thread has finished
[2025-11-27 00:07:45] 2025-11-27 05:07:17,536 | INFO     | [payload] failed_post thread has finished
[2025-11-27 00:07:45] 2025-11-27 05:07:17,536 | INFO     | [payload] validate_post thread has finished
[2025-11-27 00:07:45] 2025-11-27 05:07:17,681 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 00:07:45] 2025-11-27 05:07:18,687 | INFO     | [job] queue monitor thread has finished
[2025-11-27 00:07:45] 2025-11-27 05:07:20,993 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 00:07:45] 2025-11-27 05:07:33,374 | INFO     | [monitor] cgroup control has ended
[2025-11-27 00:07:45] 2025-11-27 05:07:35,051 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139701884983104)>', '<ExcThread(monitor, started 139701251991296)>']
[2025-11-27 00:07:45] 2025-11-27 05:07:40,077 | INFO     | all workflow threads have been joined
[2025-11-27 00:07:45] 2025-11-27 05:07:40,078 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 00:07:45] 2025-11-27 05:07:40,078 | INFO     | traces error code: 0
[2025-11-27 00:07:45] 2025-11-27 05:07:40,078 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 00:07:45] 2025-11-27 05:07:44,515 | INFO     | PID=1636665 has CPU usage=4.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 00:07:45] 2025-11-27 05:07:44,516 | INFO     | .. there are 27 such processes running
[2025-11-27 00:07:45] 2025-11-27 05:07:44,516 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 00:07:45] 2025-11-27 05:07:44,516 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 00:07:45] 2025-11-27 05:07:44,516 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 00:07:45] 2025-11-27 05:07:44,516 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 00:07:45] 2025-11-27 05:07:44,516 | INFO     | [monitor] control thread has ended
[2025-11-27 00:07:45] 2025-11-27 05:07:44,681 [wrapper] ==== pilot stdout END ====
[2025-11-27 00:07:45] 2025-11-27 05:07:44,690 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 00:07:45] 2025-11-27 05:07:44,697 [wrapper] pilotpid: 1636665
[2025-11-27 00:07:45] 2025-11-27 05:07:44,701 [wrapper] Pilot exit status: 0
[2025-11-27 00:07:45] 2025-11-27 05:07:44,732 [wrapper] pandaids: 6897488853
[2025-11-27 00:07:45] 2025-11-27 05:07:44,882 [wrapper] cleanup supervisor_pilot 2784764 1636666
[2025-11-27 00:07:45] 2025-11-27 05:07:44,887 [wrapper] Test setup, not cleaning
[2025-11-27 00:07:45] 2025-11-27 05:07:44,892 [wrapper] apfmon messages muted
[2025-11-27 00:07:45] 2025-11-27 05:07:44,896 [wrapper] ==== wrapper stdout END ====
[2025-11-27 00:07:45] 2025-11-27 05:07:44,901 [wrapper] ==== wrapper stderr END ====
[2025-11-27 00:07:45]  *** Error codes and diagnostics ***
[2025-11-27 00:07:45]     "exeErrorCode": 0,
[2025-11-27 00:07:45]     "exeErrorDiag": "",
[2025-11-27 00:07:45]     "pilotErrorCode": 0,
[2025-11-27 00:07:45]     "pilotErrorDiag": "",
[2025-11-27 00:07:45]  *** Listing of results directory ***
[2025-11-27 00:07:45] total 1312616
[2025-11-27 00:07:45] -rw-r--r--. 1 boincer umatlas    576529 Nov 25 11:48 pilot3.tar.gz
[2025-11-27 00:07:45] -rwx------. 1 boincer umatlas     36292 Nov 25 12:01 runpilot2-wrapper.sh
[2025-11-27 00:07:45] -rw-r--r--. 1 boincer umatlas      5112 Nov 25 12:02 queuedata.json
[2025-11-27 00:07:45] -rw-r--r--. 1 boincer umatlas       100 Nov 25 22:31 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 00:07:45] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 25 22:31 run_atlas
[2025-11-27 00:07:45] -rw-r--r--. 1 boincer umatlas       105 Nov 25 22:31 job.xml
[2025-11-27 00:07:45] -rw-r--r--. 2 boincer umatlas 407810278 Nov 25 22:31 EVNT.47483658._002266.pool.root.1
[2025-11-27 00:07:45] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 22:31 start_atlas.sh
[2025-11-27 00:07:45] drwxrwx--x. 2 boincer umatlas      4096 Nov 25 22:31 shared
[2025-11-27 00:07:45] -rw-r--r--. 2 boincer umatlas    590108 Nov 25 22:31 input.tar.gz
[2025-11-27 00:07:45] -rw-r--r--. 1 boincer umatlas         0 Nov 25 22:31 boinc_lockfile
[2025-11-27 00:07:45] -rw-r--r--. 1 boincer umatlas      2786 Nov 25 22:31 pandaJob.out
[2025-11-27 00:07:45] -rw-------. 1 boincer umatlas        57 Nov 25 22:31 setup.sh.local
[2025-11-27 00:07:45] -rw-------. 1 boincer umatlas    991877 Nov 25 22:31 agis_schedconf.cvmfs.json
[2025-11-27 00:07:45] drwx------. 5 boincer umatlas      4096 Nov 25 22:31 pilot3
[2025-11-27 00:07:45] -rw-r--r--. 1 boincer umatlas       532 Nov 26 23:56 boinc_task_state.xml
[2025-11-27 00:07:45] -rw-r--r--. 1 boincer umatlas      6950 Nov 27 00:00 init_data.xml
[2025-11-27 00:07:45] -rw-------. 1 boincer umatlas 902993958 Nov 27 00:06 HITS.47556161._002496.pool.root.1
[2025-11-27 00:07:45] -rw-------. 1 boincer umatlas      1065 Nov 27 00:06 memory_monitor_summary.json
[2025-11-27 00:07:45] -rw-------. 1 boincer umatlas   1516240 Nov 27 00:06 agis_ddmendpoints.agis.ALL.json
[2025-11-27 00:07:45] -rw-------. 1 boincer umatlas   2551147 Nov 27 00:06 log.47556161._002496.job.log.tgz.1
[2025-11-27 00:07:45] -rw-------. 1 boincer umatlas      8608 Nov 27 00:07 heartbeat.json
[2025-11-27 00:07:45] -rw-r--r--. 1 boincer umatlas        29 Nov 27 00:07 wrapper_checkpoint.txt
[2025-11-27 00:07:45] -rw-r--r--. 1 boincer umatlas      8192 Nov 27 00:07 boinc_mmap_file
[2025-11-27 00:07:45] -rw-------. 1 boincer umatlas        95 Nov 27 00:07 pilot_heartbeat.json
[2025-11-27 00:07:45] -rw-------. 1 boincer umatlas       823 Nov 27 00:07 pilotlog.txt
[2025-11-27 00:07:45] -rw-------. 1 boincer umatlas  12148126 Nov 27 00:07 log.47556161._002496.job.log.1
[2025-11-27 00:07:45] -rw-------. 1 boincer umatlas       353 Nov 27 00:07 output.list
[2025-11-27 00:07:45] -rw-r--r--. 1 boincer umatlas       620 Nov 27 00:07 runtime_log
[2025-11-27 00:07:45] -rw-------. 1 boincer umatlas  14714880 Nov 27 00:07 result.tar.gz
[2025-11-27 00:07:45] -rw-r--r--. 1 boincer umatlas      9338 Nov 27 00:07 runtime_log.err
[2025-11-27 00:07:45] -rw-------. 1 boincer umatlas       665 Nov 27 00:07 PAJLDmtaBi8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmCZMKDmAcIXTm.diag
[2025-11-27 00:07:45] -rw-r--r--. 1 boincer umatlas     21164 Nov 27 00:07 stderr.txt
[2025-11-27 00:07:45] HITS file was successfully produced:
[2025-11-27 00:07:45] -rw-------. 1 boincer umatlas 902993958 Nov 27 00:06 shared/HITS.pool.root.1
[2025-11-27 00:07:45]  *** Contents of shared directory: ***
[2025-11-27 00:07:45] total 1295064
[2025-11-27 00:07:45] -rw-r--r--. 2 boincer umatlas 407810278 Nov 25 22:31 ATLAS.root_0
[2025-11-27 00:07:45] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 22:31 start_atlas.sh
[2025-11-27 00:07:45] -rw-r--r--. 2 boincer umatlas    590108 Nov 25 22:31 input.tar.gz
[2025-11-27 00:07:45] -rw-------. 1 boincer umatlas 902993958 Nov 27 00:06 HITS.pool.root.1
[2025-11-27 00:07:45] -rw-------. 1 boincer umatlas  14714880 Nov 27 00:07 result.tar.gz
00:07:47 (1627965): run_atlas exited; CPU time 211696.477213
00:07:47 (1627965): called boinc_finish(0)

</stderr_txt>
]]>

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