Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:04:13 (919513): wrapper (7.7.26015): starting
00:04:13 (919513): wrapper: running run_atlas (--nthreads 9)
[2025-11-26 00:04:13] Arguments: --nthreads 9
[2025-11-26 00:04:13] Threads: 9
[2025-11-26 00:04:13] Checking for CVMFS
[2025-11-26 00:04:14] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 00:04:14] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 00:04:14] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 00:04:14] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 00:04:14] 2.13.3.0 9230 29472 332052 153309 3 346 25797145 32503808 23863 16776704 0 210315833 99.823 92170847 33996 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-26 00:04:14] CVMFS is ok
[2025-11-26 00:04:14] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 00:04:14] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 00:04:14] Further information can be found at the LHC@home message board.
[2025-11-26 00:04:14] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 00:04:14] Checking for apptainer binary...
[2025-11-26 00:04:14] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 00:04:14] Running /usr/bin/apptainer --version
[2025-11-26 00:04:14] apptainer version 1.4.4-1.el9
[2025-11-26 00:04:14] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 00:04:15] c-4-35.aglt2.org
[2025-11-26 00:04:15] apptainer works
[2025-11-26 00:04:15] Set ATHENA_PROC_NUMBER=9
[2025-11-26 00:04:15] Set ATHENA_CORE_NUMBER=9
[2025-11-26 00:04:15] Starting ATLAS job with PandaID=6897488888
[2025-11-26 00:04:15] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
14:00:10 (919513): BOINC client no longer exists - exiting
14:00:10 (919513): timer handler: client dead, exiting
14:09:33 (3956567): wrapper (7.7.26015): starting
14:09:33 (3956567): wrapper: running run_atlas (--nthreads 9)
[2025-11-26 14:09:33] Arguments: --nthreads 9
[2025-11-26 14:09:33] Threads: 9
[2025-11-26 14:09:33] This job has been restarted, cleaning up previous attempt
[2025-11-26 14:09:33] Checking for CVMFS
[2025-11-26 14:09:33] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 14:09:33] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 14:09:33] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 14:09:33] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 14:09:33] 2.13.3.0 9230 30317 320592 153332 0 223 17612927 32503808 23389 16776704 0 214417403 99.822 94528008 33898 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-26 14:09:33] CVMFS is ok
[2025-11-26 14:09:33] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 14:09:33] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 14:09:33] Further information can be found at the LHC@home message board.
[2025-11-26 14:09:33] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 14:09:33] Checking for apptainer binary...
[2025-11-26 14:09:33] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 14:09:33] Running /usr/bin/apptainer --version
[2025-11-26 14:09:34] apptainer version 1.4.4-1.el9
[2025-11-26 14:09:34] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 14:09:34] c-4-35.aglt2.org
[2025-11-26 14:09:34] apptainer works
[2025-11-26 14:09:34] Set ATHENA_PROC_NUMBER=9
[2025-11-26 14:09:34] Set ATHENA_CORE_NUMBER=9
[2025-11-26 14:09:34] Starting ATLAS job with PandaID=6897488888
[2025-11-26 14:09:34] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 13:31:22]  *** The last 200 lines of the pilot log: ***
[2025-11-27 13:31:22] 2025-11-27 18:30:11,671 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 13:31:22] 2025-11-27 18:30:11,726 | INFO     | fitting pss+swap vs Time
[2025-11-27 13:31:22] 2025-11-27 18:30:11,732 | INFO     | sum of square deviations: 809608414180.8201
[2025-11-27 13:31:22] 2025-11-27 18:30:11,829 | INFO     | sum of deviations: 4484244970935.641
[2025-11-27 13:31:22] 2025-11-27 18:30:11,829 | INFO     | mean x: 1764226181.2367465
[2025-11-27 13:31:22] 2025-11-27 18:30:11,830 | INFO     | mean y: 3108825.0072621643
[2025-11-27 13:31:22] 2025-11-27 18:30:11,830 | INFO     | intersect: -9768556392.68767
[2025-11-27 13:31:22] 2025-11-27 18:30:11,833 | INFO     | chi2: 10.849142880864658
[2025-11-27 13:31:22] 2025-11-27 18:30:11,835 | INFO     | sum of square deviations: 800821970190.7134
[2025-11-27 13:31:22] 2025-11-27 18:30:11,934 | INFO     | sum of deviations: 4974276893864.635
[2025-11-27 13:31:22] 2025-11-27 18:30:11,939 | INFO     | mean x: 1764226028.7448978
[2025-11-27 13:31:22] 2025-11-27 18:30:11,939 | INFO     | mean y: 3117328.338921283
[2025-11-27 13:31:22] 2025-11-27 18:30:11,939 | INFO     | intersect: -10955309259.595963
[2025-11-27 13:31:22] 2025-11-27 18:30:11,941 | INFO     | chi2: 7.701369255473357
[2025-11-27 13:31:22] 2025-11-27 18:30:11,941 | INFO     | current chi2=7.701369255473357 (change=29.014030508744014 %)
[2025-11-27 13:31:22] 2025-11-27 18:30:11,945 | INFO     | sum of square deviations: 792099341350.4293
[2025-11-27 13:31:22] 2025-11-27 18:30:11,992 | INFO     | sum of deviations: 5521103459978.494
[2025-11-27 13:31:22] 2025-11-27 18:30:11,992 | INFO     | mean x: 1764225876.253109
[2025-11-27 13:31:22] 2025-11-27 18:30:11,992 | INFO     | mean y: 3126888.706656913
[2025-11-27 13:31:22] 2025-11-27 18:30:11,992 | INFO     | intersect: -12293908446.48041
[2025-11-27 13:31:22] 2025-11-27 18:30:11,994 | INFO     | chi2: 3.9563421718194087
[2025-11-27 13:31:22] 2025-11-27 18:30:11,994 | INFO     | current chi2=3.9563421718194087 (change=48.62806806714742 %)
[2025-11-27 13:31:22] 2025-11-27 18:30:11,996 | INFO     | sum of square deviations: 783440211591.97
[2025-11-27 13:31:22] 2025-11-27 18:30:12,042 | INFO     | sum of deviations: 5789423321754.439
[2025-11-27 13:31:22] 2025-11-27 18:30:12,042 | INFO     | mean x: 1764225723.760646
[2025-11-27 13:31:22] 2025-11-27 18:30:12,042 | INFO     | mean y: 3131613.366372981
[2025-11-27 13:31:22] 2025-11-27 18:30:12,043 | INFO     | intersect: -13034046462.066076
[2025-11-27 13:31:22] 2025-11-27 18:30:12,044 | INFO     | chi2: 2.8637051397355453
[2025-11-27 13:31:22] 2025-11-27 18:30:12,045 | INFO     | current chi2=2.8637051397355453 (change=27.617354228524448 %)
[2025-11-27 13:31:22] 2025-11-27 18:30:12,046 | INFO     | sum of square deviations: 774844266189.4304
[2025-11-27 13:31:22] 2025-11-27 18:30:12,093 | INFO     | sum of deviations: 5923491019568.302
[2025-11-27 13:31:22] 2025-11-27 18:30:12,093 | INFO     | mean x: 1764225571.2667649
[2025-11-27 13:31:22] 2025-11-27 18:30:12,093 | INFO     | mean y: 3133988.7008106117
[2025-11-27 13:31:22] 2025-11-27 18:30:12,093 | INFO     | intersect: -13483930165.861286
[2025-11-27 13:31:22] 2025-11-27 18:30:12,095 | INFO     | chi2: 2.4013221971023584
[2025-11-27 13:31:22] 2025-11-27 18:30:12,095 | INFO     | current chi2=2.4013221971023584 (change=16.146318146283964 %)
[2025-11-27 13:31:22] 2025-11-27 18:30:12,095 | INFO     | right removable region: 1356
[2025-11-27 13:31:22] 2025-11-27 18:30:12,097 | INFO     | sum of square deviations: 800820342902.1758
[2025-11-27 13:31:22] 2025-11-27 18:30:12,218 | INFO     | sum of deviations: 4112684973464.264
[2025-11-27 13:31:22] 2025-11-27 18:30:12,218 | INFO     | mean x: 1764226333.7427113
[2025-11-27 13:31:22] 2025-11-27 18:30:12,218 | INFO     | mean y: 3115266.275510204
[2025-11-27 13:31:22] 2025-11-27 18:30:12,218 | INFO     | intersect: -9057227914.167297
[2025-11-27 13:31:22] 2025-11-27 18:30:12,220 | INFO     | chi2: 8.96722512262067
[2025-11-27 13:31:22] 2025-11-27 18:30:12,220 | INFO     | current chi2=8.96722512262067 (change=17.346234434457024 %)
[2025-11-27 13:31:22] 2025-11-27 18:30:12,220 | INFO     | left removable region: 10
[2025-11-27 13:31:22] 2025-11-27 18:30:12,227 | INFO     | sum of square deviations: 756152815413.8881
[2025-11-27 13:31:22] 2025-11-27 18:30:12,318 | INFO     | sum of deviations: 5395084186192.084
[2025-11-27 13:31:22] 2025-11-27 18:30:12,318 | INFO     | mean x: 1764225845.7734027
[2025-11-27 13:31:22] 2025-11-27 18:30:12,318 | INFO     | mean y: 3143139.3150074296
[2025-11-27 13:31:22] 2025-11-27 18:30:12,318 | INFO     | intersect: -12584453927.547176
[2025-11-27 13:31:22] 2025-11-27 18:30:12,324 | INFO     | chi2: 0.3781564504587488
[2025-11-27 13:31:22] 2025-11-27 18:30:12,324 | INFO     | current memory leak: 7.13 B/s (using 1346 data points, chi2=0.38)
[2025-11-27 13:31:22] 2025-11-27 18:30:12,326 | INFO     | could have reported an average CPU frequency of 2601 MHz (49 samples)
[2025-11-27 13:31:22] 2025-11-27 18:30:12,326 | INFO     | ..............................
[2025-11-27 13:31:22] 2025-11-27 18:30:12,326 | INFO     | . Timing measurements:
[2025-11-27 13:31:22] 2025-11-27 18:30:12,326 | INFO     | . get job = 0 s
[2025-11-27 13:31:22] 2025-11-27 18:30:12,326 | INFO     | . initial setup = 2 s
[2025-11-27 13:31:22] 2025-11-27 18:30:12,326 | INFO     | . payload setup = 5 s
[2025-11-27 13:31:22] 2025-11-27 18:30:12,326 | INFO     | . stage-in = 0 s
[2025-11-27 13:31:22] 2025-11-27 18:30:12,326 | INFO     | . payload execution = 83961 s
[2025-11-27 13:31:22] 2025-11-27 18:30:12,326 | INFO     | . stage-out = 8 s
[2025-11-27 13:31:22] 2025-11-27 18:30:12,327 | INFO     | . log creation = 1 s
[2025-11-27 13:31:22] 2025-11-27 18:30:12,327 | INFO     | ..............................
[2025-11-27 13:31:22] 2025-11-27 18:30:12,806 | INFO     | time since job start (84028s) is within the limit (172800.0s)
[2025-11-27 13:31:22] 2025-11-27 18:30:12,819 | INFO     | 
[2025-11-27 13:31:22] 2025-11-27 18:30:12,819 | INFO     | job summary report
[2025-11-27 13:31:22] 2025-11-27 18:30:12,819 | INFO     | --------------------------------------------------
[2025-11-27 13:31:22] 2025-11-27 18:30:12,819 | INFO     | PanDA job id: 6897488888
[2025-11-27 13:31:22] 2025-11-27 18:30:12,820 | INFO     | task id: 47556161
[2025-11-27 13:31:22] 2025-11-27 18:30:12,820 | INFO     | errors: (none)
[2025-11-27 13:31:22] 2025-11-27 18:30:12,820 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 13:31:22] 2025-11-27 18:30:12,820 | INFO     | pilot state: finished 
[2025-11-27 13:31:22] 2025-11-27 18:30:12,820 | INFO     | transexitcode: 0
[2025-11-27 13:31:22] 2025-11-27 18:30:12,820 | INFO     | exeerrorcode: 0
[2025-11-27 13:31:22] 2025-11-27 18:30:12,820 | INFO     | exeerrordiag: 
[2025-11-27 13:31:22] 2025-11-27 18:30:12,820 | INFO     | exitcode: 0
[2025-11-27 13:31:22] 2025-11-27 18:30:12,820 | INFO     | exitmsg: OK
[2025-11-27 13:31:22] 2025-11-27 18:30:12,820 | INFO     | cpuconsumptiontime: 292726 s
[2025-11-27 13:31:22] 2025-11-27 18:30:12,820 | INFO     | nevents: 1000
[2025-11-27 13:31:22] 2025-11-27 18:30:12,820 | INFO     | neventsw: 0
[2025-11-27 13:31:22] 2025-11-27 18:30:12,821 | INFO     | pid: 3988788
[2025-11-27 13:31:22] 2025-11-27 18:30:12,821 | INFO     | pgrp: 3988788
[2025-11-27 13:31:22] 2025-11-27 18:30:12,821 | INFO     | corecount: 9
[2025-11-27 13:31:22] 2025-11-27 18:30:12,821 | INFO     | event service: False
[2025-11-27 13:31:22] 2025-11-27 18:30:12,821 | INFO     | sizes: {0: 2283431, 1: 2284287, 5: 2284549, 12: 2284605, 83971: 2348966, 83980: 2357960, 83984: 2358144, 84013: 2358390}
[2025-11-27 13:31:22] 2025-11-27 18:30:12,821 | INFO     | --------------------------------------------------
[2025-11-27 13:31:22] 2025-11-27 18:30:12,821 | INFO     | 
[2025-11-27 13:31:22] 2025-11-27 18:30:12,821 | INFO     | executing command: ls -lF /tmp/boinchome/slots/3
[2025-11-27 13:31:22] 2025-11-27 18:30:12,889 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 13:31:22] 2025-11-27 18:30:12,890 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 13:31:22] 2025-11-27 18:30:12,890 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 13:31:22] 2025-11-27 18:30:12,890 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 13:31:22] 2025-11-27 18:30:12,890 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 13:31:22] 2025-11-27 18:30:12,890 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 13:31:22] 2025-11-27 18:30:12,890 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 13:31:22] 2025-11-27 18:30:12,890 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 13:31:22] 2025-11-27 18:30:12,890 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 13:31:22] 2025-11-27 18:30:12,891 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 13:31:22] 2025-11-27 18:30:12,891 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 13:31:22] 2025-11-27 18:30:12,891 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 13:31:22] 2025-11-27 18:30:12,891 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 13:31:22] 2025-11-27 18:30:12,891 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 13:31:22] 2025-11-27 18:30:12,891 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 13:31:22] 2025-11-27 18:30:12,891 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 13:31:22] 2025-11-27 18:30:12,891 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 13:31:22] 2025-11-27 18:30:12,892 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 13:31:22] 2025-11-27 18:30:12,892 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 13:31:22] 2025-11-27 18:30:12,892 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 13:31:22] 2025-11-27 18:30:12,892 | INFO     | job 6897488888 has completed (purged errors)
[2025-11-27 13:31:22] 2025-11-27 18:30:12,892 | INFO     | overall cleanup function is called
[2025-11-27 13:31:22] 2025-11-27 18:30:13,925 | INFO     | --- collectZombieJob: --- 10, [3988788]
[2025-11-27 13:31:22] 2025-11-27 18:30:13,925 | INFO     | zombie collector waiting for pid 3988788
[2025-11-27 13:31:22] 2025-11-27 18:30:13,925 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 13:31:22] 2025-11-27 18:30:13,925 | INFO     | collected zombie processes
[2025-11-27 13:31:22] 2025-11-27 18:30:13,926 | INFO     | will attempt to kill all subprocesses of pid=3988788
[2025-11-27 13:31:22] 2025-11-27 18:30:15,071 | INFO     | process IDs to be killed: [3988788] (in reverse order)
[2025-11-27 13:31:22] 2025-11-27 18:30:15,303 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 13:31:22] 2025-11-27 18:30:15,303 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 13:31:22] 2025-11-27 18:30:15,337 | INFO     | did not find any defunct processes belonging to 3988788
[2025-11-27 13:31:22] 2025-11-27 18:30:15,394 | INFO     | did not find any defunct processes belonging to 3988788
[2025-11-27 13:31:22] 2025-11-27 18:30:15,403 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 13:31:22] 2025-11-27 18:30:15,404 | INFO     | ready for new job
[2025-11-27 13:31:22] 2025-11-27 18:30:15,404 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 13:31:22] 2025-11-27 18:30:15,418 | INFO     | ***************************************
[2025-11-27 13:31:22] 2025-11-27 18:30:15,418 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 13:31:22] 2025-11-27 18:30:15,418 | INFO     | ***************************************
[2025-11-27 13:31:22] 2025-11-27 18:30:15,418 | INFO     | 
[2025-11-27 13:31:22] 2025-11-27 18:30:15,428 | INFO     | architecture information:
[2025-11-27 13:31:22] 2025-11-27 18:30:15,429 | INFO     | executing command: cat /etc/os-release
[2025-11-27 13:31:22] 2025-11-27 18:30:15,631 | INFO     | cat /etc/os-release:
[2025-11-27 13:31:22] NAME="CentOS Linux"
[2025-11-27 13:31:22] VERSION="7 (Core)"
[2025-11-27 13:31:22] ID="centos"
[2025-11-27 13:31:22] ID_LIKE="rhel fedora"
[2025-11-27 13:31:22] VERSION_ID="7"
[2025-11-27 13:31:22] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 13:31:22] ANSI_COLOR="0;31"
[2025-11-27 13:31:22] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 13:31:22] HOME_URL="https://www.centos.org/"
[2025-11-27 13:31:22] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 13:31:22] 
[2025-11-27 13:31:22] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 13:31:22] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 13:31:22] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 13:31:22] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 13:31:22] 
[2025-11-27 13:31:22] 2025-11-27 18:30:15,632 | INFO     | ***************************************
[2025-11-27 13:31:22] 2025-11-27 18:30:16,140 | INFO     | executing command: df -mP /tmp/boinchome/slots/3
[2025-11-27 13:31:22] 2025-11-27 18:30:16,193 | INFO     | sufficient remaining disk space (91907686400 B)
[2025-11-27 13:31:22] 2025-11-27 18:30:16,194 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 13:31:22] 2025-11-27 18:30:16,194 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 13:31:22] 2025-11-27 18:30:16,194 | INFO     | update_server=False
[2025-11-27 13:31:22] 2025-11-27 18:30:16,194 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 13:31:22] 2025-11-27 18:30:16,194 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 13:31:22] 2025-11-27 18:30:16,235 | INFO     | all payload control threads have been joined
[2025-11-27 13:31:22] 2025-11-27 18:30:16,649 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 13:31:22] 2025-11-27 18:30:16,752 | INFO     | all data control threads have been joined
[2025-11-27 13:31:22] 2025-11-27 18:30:16,880 | INFO     | all job control threads have been joined
[2025-11-27 13:31:22] 2025-11-27 18:30:16,913 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 13:31:22] 2025-11-27 18:30:16,913 | INFO     | aborting loop
[2025-11-27 13:31:22] 2025-11-27 18:30:17,208 | INFO     | [job] retrieve thread has finished
[2025-11-27 13:31:22] 2025-11-27 18:30:17,242 | INFO     | [payload] control thread has finished
[2025-11-27 13:31:22] 2025-11-27 18:30:17,357 | INFO     | [payload] validate_post thread has finished
[2025-11-27 13:31:22] 2025-11-27 18:30:17,575 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 13:31:22] 2025-11-27 18:30:17,597 | INFO     | [payload] failed_post thread has finished
[2025-11-27 13:31:22] 2025-11-27 18:30:17,758 | INFO     | [data] control thread has finished
[2025-11-27 13:31:22] 2025-11-27 18:30:17,839 | INFO     | [data] copytool_in thread has finished
[2025-11-27 13:31:22] 2025-11-27 18:30:17,887 | INFO     | [job] control thread has finished
[2025-11-27 13:31:22] 2025-11-27 18:30:17,919 | INFO     | [job] job monitor thread has finished
[2025-11-27 13:31:22] 2025-11-27 18:30:17,951 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 13:31:22] 2025-11-27 18:30:18,201 | INFO     | [data] copytool_out thread has finished
[2025-11-27 13:31:22] 2025-11-27 18:30:18,336 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 13:31:22] 2025-11-27 18:30:18,380 | INFO     | [job] validate thread has finished
[2025-11-27 13:31:22] 2025-11-27 18:30:18,381 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 13:31:22] 2025-11-27 18:30:18,398 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 13:31:22] 2025-11-27 18:30:18,583 | INFO     | [job] queue monitor thread has finished
[2025-11-27 13:31:22] 2025-11-27 18:30:20,657 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 13:31:22] 2025-11-27 18:30:47,542 | INFO     | PID=3967641 has CPU usage=4.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 13:31:22] 2025-11-27 18:30:47,542 | INFO     | .. there are 41 such processes running
[2025-11-27 13:31:22] 2025-11-27 18:30:47,543 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 13:31:22] 2025-11-27 18:30:47,543 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 13:31:22] 2025-11-27 18:30:47,543 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 13:31:22] 2025-11-27 18:31:15,553 | INFO     | [monitor] cgroup control has ended
[2025-11-27 13:31:22] 2025-11-27 18:31:16,309 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140434232899392)>', '<ExcThread(monitor, started 140433611024128)>']
[2025-11-27 13:31:22] 2025-11-27 18:31:16,770 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 13:31:22] 2025-11-27 18:31:16,770 | INFO     | [monitor] control thread has ended
[2025-11-27 13:31:22] 2025-11-27 18:31:21,344 | INFO     | all workflow threads have been joined
[2025-11-27 13:31:22] 2025-11-27 18:31:21,344 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 13:31:22] 2025-11-27 18:31:21,345 | INFO     | traces error code: 0
[2025-11-27 13:31:22] 2025-11-27 18:31:21,345 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 13:31:22] 2025-11-27 18:31:21,531 [wrapper] ==== pilot stdout END ====
[2025-11-27 13:31:22] 2025-11-27 18:31:21,562 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 13:31:22] 2025-11-27 18:31:21,565 [wrapper] pilotpid: 3967641
[2025-11-27 13:31:22] 2025-11-27 18:31:21,567 [wrapper] Pilot exit status: 0
[2025-11-27 13:31:22] 2025-11-27 18:31:21,666 [wrapper] pandaids: 6897488888 6897488888
[2025-11-27 13:31:22] 2025-11-27 18:31:22,039 [wrapper] cleanup supervisor_pilot  557029 3967642
[2025-11-27 13:31:22] 2025-11-27 18:31:22,049 [wrapper] Test setup, not cleaning
[2025-11-27 13:31:22] 2025-11-27 18:31:22,059 [wrapper] apfmon messages muted
[2025-11-27 13:31:22] 2025-11-27 18:31:22,075 [wrapper] ==== wrapper stdout END ====
[2025-11-27 13:31:22] 2025-11-27 18:31:22,105 [wrapper] ==== wrapper stderr END ====
[2025-11-27 13:31:22]  *** Error codes and diagnostics ***
[2025-11-27 13:31:22]     "exeErrorCode": 0,
[2025-11-27 13:31:22]     "exeErrorDiag": "",
[2025-11-27 13:31:22]     "pilotErrorCode": 0,
[2025-11-27 13:31:22]     "pilotErrorDiag": "",
[2025-11-27 13:31:22]  *** Listing of results directory ***
[2025-11-27 13:31:22] total 1713004
[2025-11-27 13:31:22] drwx------. 5 boincer umatlas      4096 Nov  5 12:16 pilot3
[2025-11-27 13:31:22] -rw-r--r--. 1 boincer umatlas    576529 Nov 25 11:48 pilot3.tar.gz
[2025-11-27 13:31:22] -rwx------. 1 boincer umatlas     36292 Nov 25 12:01 runpilot2-wrapper.sh
[2025-11-27 13:31:22] -rw-r--r--. 1 boincer umatlas      5112 Nov 25 12:02 queuedata.json
[2025-11-27 13:31:22] -rw-r--r--. 1 boincer umatlas       100 Nov 26 00:04 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 13:31:22] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 26 00:04 run_atlas
[2025-11-27 13:31:22] -rw-r--r--. 1 boincer umatlas       105 Nov 26 00:04 job.xml
[2025-11-27 13:31:22] -rw-r--r--. 3 boincer umatlas 407603472 Nov 26 00:04 EVNT.47483658._002270.pool.root.1
[2025-11-27 13:31:22] -rw-r--r--. 3 boincer umatlas 407603472 Nov 26 00:04 ATLAS.root_0
[2025-11-27 13:31:22] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 00:04 start_atlas.sh
[2025-11-27 13:31:22] drwxrwx--x. 2 boincer umatlas      4096 Nov 26 00:04 shared
[2025-11-27 13:31:22] -rw-r--r--. 2 boincer umatlas    590104 Nov 26 00:04 input.tar.gz
[2025-11-27 13:31:22] -rw-r--r--. 1 boincer umatlas         0 Nov 26 00:04 boinc_lockfile
[2025-11-27 13:31:22] -rw-r--r--. 1 boincer umatlas      2783 Nov 26 14:09 pandaJob.out
[2025-11-27 13:31:22] -rw-------. 1 boincer umatlas        57 Nov 26 14:09 setup.sh.local
[2025-11-27 13:31:22] -rw-------. 1 boincer umatlas    991522 Nov 26 14:09 agis_schedconf.cvmfs.json
[2025-11-27 13:31:22] -rw-r--r--. 1 boincer umatlas       534 Nov 27 13:09 boinc_task_state.xml
[2025-11-27 13:31:22] -rw-r--r--. 1 boincer umatlas      6662 Nov 27 13:21 init_data.xml
[2025-11-27 13:31:22] -rw-------. 1 boincer umatlas 908416716 Nov 27 13:28 HITS.47556161._002531.pool.root.1
[2025-11-27 13:31:22] -rw-------. 1 boincer umatlas      1070 Nov 27 13:29 memory_monitor_summary.json
[2025-11-27 13:31:22] -rw-------. 1 boincer umatlas   1516240 Nov 27 13:29 agis_ddmendpoints.agis.ALL.json
[2025-11-27 13:31:22] -rw-------. 1 boincer umatlas   2534224 Nov 27 13:29 log.47556161._002531.job.log.tgz.1
[2025-11-27 13:31:22] -rw-------. 1 boincer umatlas        96 Nov 27 13:30 pilot_heartbeat.json
[2025-11-27 13:31:22] -rw-------. 1 boincer umatlas      8644 Nov 27 13:30 heartbeat.json
[2025-11-27 13:31:22] -rw-r--r--. 1 boincer umatlas      8192 Nov 27 13:31 boinc_mmap_file
[2025-11-27 13:31:22] -rw-r--r--. 1 boincer umatlas        30 Nov 27 13:31 wrapper_checkpoint.txt
[2025-11-27 13:31:22] -rw-------. 1 boincer umatlas      4824 Nov 27 13:31 pilotlog.txt
[2025-11-27 13:31:22] -rw-------. 1 boincer umatlas  10747869 Nov 27 13:31 log.47556161._002531.job.log.1
[2025-11-27 13:31:22] -rw-------. 1 boincer umatlas       353 Nov 27 13:31 output.list
[2025-11-27 13:31:22] -rw-r--r--. 1 boincer umatlas       620 Nov 27 13:31 runtime_log
[2025-11-27 13:31:22] -rw-------. 1 boincer umatlas  13301760 Nov 27 13:31 result.tar.gz
[2025-11-27 13:31:22] -rw-------. 1 boincer umatlas       787 Nov 27 13:31 eTALDmgaBi8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm4XMKDmigjNRo.diag
[2025-11-27 13:31:22] -rw-r--r--. 1 boincer umatlas      9418 Nov 27 13:31 runtime_log.err
[2025-11-27 13:31:22] -rw-r--r--. 1 boincer umatlas     23412 Nov 27 13:31 stderr.txt
[2025-11-27 13:31:22] HITS file was successfully produced:
[2025-11-27 13:31:22] -rw-------. 1 boincer umatlas 908416716 Nov 27 13:28 shared/HITS.pool.root.1
[2025-11-27 13:31:22]  *** Contents of shared directory: ***
[2025-11-27 13:31:22] total 1298776
[2025-11-27 13:31:22] -rw-r--r--. 3 boincer umatlas 407603472 Nov 26 00:04 ATLAS.root_0
[2025-11-27 13:31:22] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 00:04 start_atlas.sh
[2025-11-27 13:31:22] -rw-r--r--. 2 boincer umatlas    590104 Nov 26 00:04 input.tar.gz
[2025-11-27 13:31:22] -rw-------. 1 boincer umatlas 908416716 Nov 27 13:28 HITS.pool.root.1
[2025-11-27 13:31:22] -rw-------. 1 boincer umatlas  13301760 Nov 27 13:31 result.tar.gz
13:31:24 (3956567): run_atlas exited; CPU time 295398.336401
13:31:24 (3956567): called boinc_finish(0)

</stderr_txt>
]]>

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