Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
22:31:37 (507251): wrapper (7.7.26015): starting
22:31:37 (507251): wrapper: running run_atlas (--nthreads 8)
[2025-11-25 22:31:37] Arguments: --nthreads 8
[2025-11-25 22:31:37] Threads: 8
[2025-11-25 22:31:37] Checking for CVMFS
[2025-11-25 22:31:38] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 22:31:38] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 22:31:38] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 22:31:39] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 22:31:39] 2.13.3.0 6673 7041 242512 153307 3 189 20750760 32935936 59238 16776704 0 63844997 99.758 40494324 30546 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-25 22:31:39] CVMFS is ok
[2025-11-25 22:31:39] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 22:31:39] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 22:31:39] Further information can be found at the LHC@home message board.
[2025-11-25 22:31:39] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 22:31:39] Checking for apptainer binary...
[2025-11-25 22:31:39] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 22:31:39] Running /usr/bin/apptainer --version
[2025-11-25 22:31:39] apptainer version 1.4.4-1.el9
[2025-11-25 22:31:39] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 22:31:40] lc-10-9.aglt2.org
[2025-11-25 22:31:40] apptainer works
[2025-11-25 22:31:40] Set ATHENA_PROC_NUMBER=8
[2025-11-25 22:31:40] Set ATHENA_CORE_NUMBER=8
[2025-11-25 22:31:40] Starting ATLAS job with PandaID=6897488216
[2025-11-25 22:31:40] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 16:41:56]  *** The last 200 lines of the pilot log: ***
[2025-11-26 16:41:56] 2025-11-26 21:40:59,196 | INFO     | monitor loop #3517: job 0:6897488216 is in state 'finished'
[2025-11-26 16:41:56] 2025-11-26 21:40:59,196 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 16:41:56] 2025-11-26 21:41:00,223 | INFO     | time since job start (65300s) is within the limit (172800.0s)
[2025-11-26 16:41:56] 2025-11-26 21:41:00,609 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-26 16:41:56] 2025-11-26 21:41:00,614 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2719.6588958333336
[2025-11-26 16:41:56] 2025-11-26 21:41:00,629 | INFO     | using path: /tmp/boinchome/slots/4/PanDA_Pilot-6897488216/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 16:41:56] 2025-11-26 21:41:00,630 | INFO     | extracted standard info from prmon json
[2025-11-26 16:41:56] 2025-11-26 21:41:00,630 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 16:41:56] 2025-11-26 21:41:00,630 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 16:41:56] 2025-11-26 21:41:00,647 | INFO     | fitting pss+swap vs Time
[2025-11-26 16:41:56] 2025-11-26 21:41:00,648 | INFO     | sum of square deviations: 378800888253.77545
[2025-11-26 16:41:56] 2025-11-26 21:41:00,669 | INFO     | sum of deviations: 2081219879070.8486
[2025-11-26 16:41:56] 2025-11-26 21:41:00,669 | INFO     | mean x: 1764160655.5715623
[2025-11-26 16:41:56] 2025-11-26 21:41:00,669 | INFO     | mean y: 2871671.06080449
[2025-11-26 16:41:56] 2025-11-26 21:41:00,670 | INFO     | intersect: -9689835870.29645
[2025-11-26 16:41:56] 2025-11-26 21:41:00,671 | INFO     | chi2: 9.8907016769553
[2025-11-26 16:41:56] 2025-11-26 21:41:00,672 | INFO     | sum of square deviations: 373510957261.36847
[2025-11-26 16:41:56] 2025-11-26 21:41:00,692 | INFO     | sum of deviations: 2450225053997.2104
[2025-11-26 16:41:56] 2025-11-26 21:41:00,693 | INFO     | mean x: 1764160503.0789473
[2025-11-26 16:41:56] 2025-11-26 21:41:00,693 | INFO     | mean y: 2882307.4736842103
[2025-11-26 16:41:56] 2025-11-26 21:41:00,693 | INFO     | intersect: -11569978353.991674
[2025-11-26 16:41:56] 2025-11-26 21:41:00,694 | INFO     | chi2: 6.616074938969589
[2025-11-26 16:41:56] 2025-11-26 21:41:00,694 | INFO     | current chi2=6.616074938969589 (change=33.10813372943379 %)
[2025-11-26 16:41:56] 2025-11-26 21:41:00,696 | INFO     | sum of square deviations: 368270515568.8438
[2025-11-26 16:41:56] 2025-11-26 21:41:00,719 | INFO     | sum of deviations: 2619707682350.4546
[2025-11-26 16:41:56] 2025-11-26 21:41:00,719 | INFO     | mean x: 1764160350.5864022
[2025-11-26 16:41:56] 2025-11-26 21:41:00,719 | INFO     | mean y: 2887230.809254013
[2025-11-26 16:41:56] 2025-11-26 21:41:00,720 | INFO     | intersect: -12546541050.709846
[2025-11-26 16:41:56] 2025-11-26 21:41:00,721 | INFO     | chi2: 5.536759873740888
[2025-11-26 16:41:56] 2025-11-26 21:41:00,721 | INFO     | current chi2=5.536759873740888 (change=16.313525393604415 %)
[2025-11-26 16:41:56] 2025-11-26 21:41:00,721 | INFO     | right removable region: 1058
[2025-11-26 16:41:56] 2025-11-26 21:41:00,722 | INFO     | sum of square deviations: 373509932461.36786
[2025-11-26 16:41:56] 2025-11-26 21:41:00,743 | INFO     | sum of deviations: 1663235840855.8198
[2025-11-26 16:41:56] 2025-11-26 21:41:00,743 | INFO     | mean x: 1764160808.0789473
[2025-11-26 16:41:56] 2025-11-26 21:41:00,743 | INFO     | mean y: 2883717.264097744
[2025-11-26 16:41:56] 2025-11-26 21:41:00,743 | INFO     | intersect: -7852905995.459422
[2025-11-26 16:41:56] 2025-11-26 21:41:00,745 | INFO     | chi2: 5.914649064153217
[2025-11-26 16:41:56] 2025-11-26 21:41:00,745 | INFO     | current chi2=5.914649064153217 (change=40.19990434112507 %)
[2025-11-26 16:41:56] 2025-11-26 21:41:00,746 | INFO     | sum of square deviations: 368268530631.0164
[2025-11-26 16:41:56] 2025-11-26 21:41:00,771 | INFO     | sum of deviations: 1430604067211.372
[2025-11-26 16:41:56] 2025-11-26 21:41:00,771 | INFO     | mean x: 1764160960.585458
[2025-11-26 16:41:56] 2025-11-26 21:41:00,771 | INFO     | mean y: 2890480.4655335224
[2025-11-26 16:41:56] 2025-11-26 21:41:00,771 | INFO     | intersect: -6850303956.4976225
[2025-11-26 16:41:56] 2025-11-26 21:41:00,773 | INFO     | chi2: 4.674111982886704
[2025-11-26 16:41:56] 2025-11-26 21:41:00,773 | INFO     | current chi2=4.674111982886704 (change=20.97397610257231 %)
[2025-11-26 16:41:56] 2025-11-26 21:41:00,773 | INFO     | left removable region: 20
[2025-11-26 16:41:56] 2025-11-26 21:41:00,784 | INFO     | sum of square deviations: 346792631935.9697
[2025-11-26 16:41:56] 2025-11-26 21:41:00,804 | INFO     | sum of deviations: 1849591289556.2058
[2025-11-26 16:41:56] 2025-11-26 21:41:00,804 | INFO     | mean x: 1764160930.103083
[2025-11-26 16:41:56] 2025-11-26 21:41:00,804 | INFO     | mean y: 2910457.9046242773
[2025-11-26 16:41:56] 2025-11-26 21:41:00,804 | INFO     | intersect: -9406103428.804762
[2025-11-26 16:41:56] 2025-11-26 21:41:00,806 | INFO     | chi2: 0.16078978847233333
[2025-11-26 16:41:56] 2025-11-26 21:41:00,806 | INFO     | current memory leak: 5.33 B/s (using 1038 data points, chi2=0.16)
[2025-11-26 16:41:56] 2025-11-26 21:41:00,807 | INFO     | could have reported an average CPU frequency of 2696 MHz (39 samples)
[2025-11-26 16:41:56] 2025-11-26 21:41:00,807 | INFO     | ..............................
[2025-11-26 16:41:56] 2025-11-26 21:41:00,807 | INFO     | . Timing measurements:
[2025-11-26 16:41:56] 2025-11-26 21:41:00,807 | INFO     | . get job = 0 s
[2025-11-26 16:41:56] 2025-11-26 21:41:00,807 | INFO     | . initial setup = 5 s
[2025-11-26 16:41:56] 2025-11-26 21:41:00,808 | INFO     | . payload setup = 36 s
[2025-11-26 16:41:56] 2025-11-26 21:41:00,808 | INFO     | . stage-in = 0 s
[2025-11-26 16:41:56] 2025-11-26 21:41:00,808 | INFO     | . payload execution = 65183 s
[2025-11-26 16:41:56] 2025-11-26 21:41:00,808 | INFO     | . stage-out = 4 s
[2025-11-26 16:41:56] 2025-11-26 21:41:00,808 | INFO     | . log creation = 0 s
[2025-11-26 16:41:56] 2025-11-26 21:41:00,808 | INFO     | ..............................
[2025-11-26 16:41:56] 2025-11-26 21:41:00,924 | INFO     | 
[2025-11-26 16:41:56] 2025-11-26 21:41:00,924 | INFO     | job summary report
[2025-11-26 16:41:56] 2025-11-26 21:41:00,924 | INFO     | --------------------------------------------------
[2025-11-26 16:41:56] 2025-11-26 21:41:00,924 | INFO     | PanDA job id: 6897488216
[2025-11-26 16:41:56] 2025-11-26 21:41:00,924 | INFO     | task id: 47556161
[2025-11-26 16:41:56] 2025-11-26 21:41:00,925 | INFO     | errors: (none)
[2025-11-26 16:41:56] 2025-11-26 21:41:00,925 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 16:41:56] 2025-11-26 21:41:00,925 | INFO     | pilot state: finished 
[2025-11-26 16:41:56] 2025-11-26 21:41:00,925 | INFO     | transexitcode: 0
[2025-11-26 16:41:56] 2025-11-26 21:41:00,925 | INFO     | exeerrorcode: 0
[2025-11-26 16:41:56] 2025-11-26 21:41:00,925 | INFO     | exeerrordiag: 
[2025-11-26 16:41:56] 2025-11-26 21:41:00,925 | INFO     | exitcode: 0
[2025-11-26 16:41:56] 2025-11-26 21:41:00,925 | INFO     | exitmsg: OK
[2025-11-26 16:41:56] 2025-11-26 21:41:00,925 | INFO     | cpuconsumptiontime: 263611 s
[2025-11-26 16:41:56] 2025-11-26 21:41:00,925 | INFO     | nevents: 1000
[2025-11-26 16:41:56] 2025-11-26 21:41:00,925 | INFO     | neventsw: 0
[2025-11-26 16:41:56] 2025-11-26 21:41:00,925 | INFO     | pid: 520964
[2025-11-26 16:41:56] 2025-11-26 21:41:00,925 | INFO     | pgrp: 520964
[2025-11-26 16:41:56] 2025-11-26 21:41:00,925 | INFO     | corecount: 8
[2025-11-26 16:41:56] 2025-11-26 21:41:00,926 | INFO     | event service: False
[2025-11-26 16:41:56] 2025-11-26 21:41:00,926 | INFO     | sizes: {0: 2284265, 1: 2284265, 12: 2284293, 23: 2284321, 24: 2284611, 33: 2284639, 65223: 2339372, 65224: 2339371, 65229: 2348421, 65233: 2348477, 65243: 2348723}
[2025-11-26 16:41:56] 2025-11-26 21:41:00,926 | INFO     | --------------------------------------------------
[2025-11-26 16:41:56] 2025-11-26 21:41:00,926 | INFO     | 
[2025-11-26 16:41:56] 2025-11-26 21:41:00,926 | INFO     | executing command: ls -lF /tmp/boinchome/slots/4
[2025-11-26 16:41:56] 2025-11-26 21:41:00,950 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 16:41:56] 2025-11-26 21:41:00,951 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 16:41:56] 2025-11-26 21:41:00,951 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 16:41:56] 2025-11-26 21:41:00,951 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 16:41:56] 2025-11-26 21:41:00,951 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 16:41:56] 2025-11-26 21:41:00,951 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 16:41:56] 2025-11-26 21:41:00,951 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 16:41:56] 2025-11-26 21:41:00,951 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 16:41:56] 2025-11-26 21:41:00,951 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 16:41:56] 2025-11-26 21:41:00,951 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 16:41:56] 2025-11-26 21:41:00,951 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 16:41:56] 2025-11-26 21:41:00,951 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 16:41:56] 2025-11-26 21:41:00,951 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 16:41:56] 2025-11-26 21:41:00,951 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 16:41:56] 2025-11-26 21:41:00,952 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 16:41:56] 2025-11-26 21:41:00,952 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 16:41:56] 2025-11-26 21:41:00,952 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 16:41:56] 2025-11-26 21:41:00,952 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 16:41:56] 2025-11-26 21:41:00,952 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 16:41:56] 2025-11-26 21:41:00,952 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 16:41:56] 2025-11-26 21:41:00,952 | INFO     | job 6897488216 has completed (purged errors)
[2025-11-26 16:41:56] 2025-11-26 21:41:00,952 | INFO     | overall cleanup function is called
[2025-11-26 16:41:56] 2025-11-26 21:41:01,972 | INFO     | --- collectZombieJob: --- 10, [520964]
[2025-11-26 16:41:56] 2025-11-26 21:41:01,972 | INFO     | zombie collector waiting for pid 520964
[2025-11-26 16:41:56] 2025-11-26 21:41:01,972 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 16:41:56] 2025-11-26 21:41:01,973 | INFO     | collected zombie processes
[2025-11-26 16:41:56] 2025-11-26 21:41:01,973 | INFO     | will attempt to kill all subprocesses of pid=520964
[2025-11-26 16:41:56] 2025-11-26 21:41:02,821 | INFO     | process IDs to be killed: [520964] (in reverse order)
[2025-11-26 16:41:56] 2025-11-26 21:41:03,044 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 16:41:56] 2025-11-26 21:41:03,044 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 16:41:56] 2025-11-26 21:41:03,084 | INFO     | did not find any defunct processes belonging to 520964
[2025-11-26 16:41:56] 2025-11-26 21:41:03,119 | INFO     | did not find any defunct processes belonging to 520964
[2025-11-26 16:41:56] 2025-11-26 21:41:03,121 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 16:41:56] 2025-11-26 21:41:03,121 | INFO     | ready for new job
[2025-11-26 16:41:56] 2025-11-26 21:41:03,122 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 16:41:56] 2025-11-26 21:41:03,126 | INFO     | ***************************************
[2025-11-26 16:41:56] 2025-11-26 21:41:03,127 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 16:41:56] 2025-11-26 21:41:03,127 | INFO     | ***************************************
[2025-11-26 16:41:56] 2025-11-26 21:41:03,127 | INFO     | 
[2025-11-26 16:41:56] 2025-11-26 21:41:03,132 | INFO     | architecture information:
[2025-11-26 16:41:56] 2025-11-26 21:41:03,135 | INFO     | executing command: cat /etc/os-release
[2025-11-26 16:41:56] 2025-11-26 21:41:03,155 | INFO     | cat /etc/os-release:
[2025-11-26 16:41:56] NAME="CentOS Linux"
[2025-11-26 16:41:56] VERSION="7 (Core)"
[2025-11-26 16:41:56] ID="centos"
[2025-11-26 16:41:56] ID_LIKE="rhel fedora"
[2025-11-26 16:41:56] VERSION_ID="7"
[2025-11-26 16:41:56] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 16:41:56] ANSI_COLOR="0;31"
[2025-11-26 16:41:56] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 16:41:56] HOME_URL="https://www.centos.org/"
[2025-11-26 16:41:56] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 16:41:56] 
[2025-11-26 16:41:56] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 16:41:56] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 16:41:56] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 16:41:56] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 16:41:56] 
[2025-11-26 16:41:56] 2025-11-26 21:41:03,156 | INFO     | ***************************************
[2025-11-26 16:41:56] 2025-11-26 21:41:03,661 | INFO     | executing command: df -mP /tmp/boinchome/slots/4
[2025-11-26 16:41:56] 2025-11-26 21:41:03,691 | INFO     | sufficient remaining disk space (86961553408 B)
[2025-11-26 16:41:56] 2025-11-26 21:41:03,692 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 16:41:56] 2025-11-26 21:41:03,692 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 16:41:56] 2025-11-26 21:41:03,692 | INFO     | update_server=False
[2025-11-26 16:41:56] 2025-11-26 21:41:03,692 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 16:41:56] 2025-11-26 21:41:03,692 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 16:41:56] 2025-11-26 21:41:03,692 | INFO     | aborting loop
[2025-11-26 16:41:56] 2025-11-26 21:41:03,784 | INFO     | all data control threads have been joined
[2025-11-26 16:41:56] 2025-11-26 21:41:04,381 | INFO     | all payload control threads have been joined
[2025-11-26 16:41:56] 2025-11-26 21:41:04,697 | INFO     | [job] job monitor thread has finished
[2025-11-26 16:41:56] 2025-11-26 21:41:04,725 | INFO     | [job] retrieve thread has finished
[2025-11-26 16:41:56] 2025-11-26 21:41:04,751 | INFO     | [data] copytool_in thread has finished
[2025-11-26 16:41:56] 2025-11-26 21:41:04,779 | INFO     | all job control threads have been joined
[2025-11-26 16:41:56] 2025-11-26 21:41:04,803 | INFO     | [data] control thread has finished
[2025-11-26 16:41:56] 2025-11-26 21:41:05,028 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 16:41:56] 2025-11-26 21:41:05,068 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 16:41:56] 2025-11-26 21:41:05,387 | INFO     | [payload] control thread has finished
[2025-11-26 16:41:56] 2025-11-26 21:41:05,392 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 16:41:56] 2025-11-26 21:41:05,423 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 16:41:56] 2025-11-26 21:41:05,447 | INFO     | [payload] validate_post thread has finished
[2025-11-26 16:41:56] 2025-11-26 21:41:05,477 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 16:41:56] 2025-11-26 21:41:05,534 | INFO     | [payload] failed_post thread has finished
[2025-11-26 16:41:56] 2025-11-26 21:41:05,756 | INFO     | [job] validate thread has finished
[2025-11-26 16:41:56] 2025-11-26 21:41:05,785 | INFO     | [job] control thread has finished
[2025-11-26 16:41:56] 2025-11-26 21:41:05,941 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 16:41:56] 2025-11-26 21:41:06,093 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 16:41:56] 2025-11-26 21:41:06,947 | INFO     | [job] queue monitor thread has finished
[2025-11-26 16:41:56] 2025-11-26 21:41:07,037 | INFO     | [data] copytool_out thread has finished
[2025-11-26 16:41:56] 2025-11-26 21:41:09,487 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 16:41:56] 2025-11-26 21:41:34,117 | INFO     | PID=511812 has CPU usage=4.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-26 16:41:56] 2025-11-26 21:41:34,118 | INFO     | .. there are 88 such processes running
[2025-11-26 16:41:56] 2025-11-26 21:41:34,118 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 16:41:56] 2025-11-26 21:41:34,118 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 16:41:56] 2025-11-26 21:41:34,118 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 16:41:56] 2025-11-26 21:41:39,030 | INFO     | [monitor] cgroup control has ended
[2025-11-26 16:41:56] 2025-11-26 21:41:39,246 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140004188174144)>', '<ExcThread(monitor, started 140003703248640)>']
[2025-11-26 16:41:56] 2025-11-26 21:41:40,152 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 16:41:56] 2025-11-26 21:41:40,152 | INFO     | [monitor] control thread has ended
[2025-11-26 16:41:56] 2025-11-26 21:41:44,272 | INFO     | all workflow threads have been joined
[2025-11-26 16:41:56] 2025-11-26 21:41:44,272 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 16:41:56] 2025-11-26 21:41:44,273 | INFO     | traces error code: 0
[2025-11-26 16:41:56] 2025-11-26 21:41:44,273 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 16:41:56] 2025-11-26 21:41:44,474 [wrapper] ==== pilot stdout END ====
[2025-11-26 16:41:56] 2025-11-26 21:41:44,478 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 16:41:56] 2025-11-26 21:41:44,482 [wrapper] pilotpid: 511812
[2025-11-26 16:41:56] 2025-11-26 21:41:44,487 [wrapper] Pilot exit status: 0
[2025-11-26 16:41:56] 2025-11-26 21:41:44,504 [wrapper] pandaids: 6897488216
[2025-11-26 16:41:56] 2025-11-26 21:41:44,638 [wrapper] cleanup supervisor_pilot 3145584 511813
[2025-11-26 16:41:56] 2025-11-26 21:41:44,643 [wrapper] Test setup, not cleaning
[2025-11-26 16:41:56] 2025-11-26 21:41:44,646 [wrapper] apfmon messages muted
[2025-11-26 16:41:56] 2025-11-26 21:41:44,650 [wrapper] ==== wrapper stdout END ====
[2025-11-26 16:41:56] 2025-11-26 21:41:44,654 [wrapper] ==== wrapper stderr END ====
[2025-11-26 16:41:56]  *** Error codes and diagnostics ***
[2025-11-26 16:41:56]     "exeErrorCode": 0,
[2025-11-26 16:41:56]     "exeErrorDiag": "",
[2025-11-26 16:41:56]     "pilotErrorCode": 0,
[2025-11-26 16:41:56]     "pilotErrorDiag": "",
[2025-11-26 16:41:56]  *** Listing of results directory ***
[2025-11-26 16:41:56] total 1305204
[2025-11-26 16:41:56] -rw-r--r--. 1 boincer umatlas    576529 Nov 25 11:48 pilot3.tar.gz
[2025-11-26 16:41:56] -rw-r--r--. 1 boincer umatlas      5112 Nov 25 11:55 queuedata.json
[2025-11-26 16:41:56] -rwx------. 1 boincer umatlas     36292 Nov 25 11:57 runpilot2-wrapper.sh
[2025-11-26 16:41:56] -rw-r--r--. 1 boincer umatlas       100 Nov 25 22:31 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 16:41:56] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 25 22:31 run_atlas
[2025-11-26 16:41:56] -rw-r--r--. 1 boincer umatlas       105 Nov 25 22:31 job.xml
[2025-11-26 16:41:56] -rw-r--r--. 2 boincer umatlas 407598242 Nov 25 22:31 EVNT.47483658._002264.pool.root.1
[2025-11-26 16:41:56] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 22:31 start_atlas.sh
[2025-11-26 16:41:56] drwxrwx--x. 2 boincer umatlas      4096 Nov 25 22:31 shared
[2025-11-26 16:41:56] -rw-r--r--. 2 boincer umatlas    590111 Nov 25 22:31 input.tar.gz
[2025-11-26 16:41:56] -rw-r--r--. 1 boincer umatlas         0 Nov 25 22:31 boinc_lockfile
[2025-11-26 16:41:56] -rw-r--r--. 1 boincer umatlas      2786 Nov 25 22:31 pandaJob.out
[2025-11-26 16:41:56] -rw-------. 1 boincer umatlas        57 Nov 25 22:31 setup.sh.local
[2025-11-26 16:41:56] -rw-------. 1 boincer umatlas    991877 Nov 25 22:32 agis_schedconf.cvmfs.json
[2025-11-26 16:41:56] drwx------. 5 boincer umatlas      4096 Nov 25 22:32 pilot3
[2025-11-26 16:41:56] -rw-r--r--. 1 boincer umatlas       533 Nov 26 16:27 boinc_task_state.xml
[2025-11-26 16:41:56] -rw-r--r--. 1 boincer umatlas      6887 Nov 26 16:38 init_data.xml
[2025-11-26 16:41:56] -rw-------. 1 boincer umatlas 905257770 Nov 26 16:39 HITS.47556161._002477.pool.root.1
[2025-11-26 16:41:56] -rw-------. 1 boincer umatlas      1059 Nov 26 16:40 memory_monitor_summary.json
[2025-11-26 16:41:56] -rw-------. 1 boincer umatlas   1516240 Nov 26 16:40 agis_ddmendpoints.agis.ALL.json
[2025-11-26 16:41:56] -rw-------. 1 boincer umatlas   2156117 Nov 26 16:40 log.47556161._002477.job.log.tgz.1
[2025-11-26 16:41:56] -rw-------. 1 boincer umatlas        95 Nov 26 16:40 pilot_heartbeat.json
[2025-11-26 16:41:56] -rw-------. 1 boincer umatlas      8616 Nov 26 16:41 heartbeat.json
[2025-11-26 16:41:56] -rw-------. 1 boincer umatlas      4823 Nov 26 16:41 pilotlog.txt
[2025-11-26 16:41:56] -rw-------. 1 boincer umatlas   7717616 Nov 26 16:41 log.47556161._002477.job.log.1
[2025-11-26 16:41:56] -rw-------. 1 boincer umatlas       353 Nov 26 16:41 output.list
[2025-11-26 16:41:56] -rw-r--r--. 1 boincer umatlas       620 Nov 26 16:41 runtime_log
[2025-11-26 16:41:56] -rw-------. 1 boincer umatlas   9891840 Nov 26 16:41 result.tar.gz
[2025-11-26 16:41:56] -rw-r--r--. 1 boincer umatlas      9338 Nov 26 16:41 runtime_log.err
[2025-11-26 16:41:56] -rw-------. 1 boincer umatlas       659 Nov 26 16:41 f9nMDmMXBi8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmuXMKDmtL0pdm.diag
[2025-11-26 16:41:56] -rw-r--r--. 1 boincer umatlas      8192 Nov 26 16:41 boinc_mmap_file
[2025-11-26 16:41:56] -rw-r--r--. 1 boincer umatlas        29 Nov 26 16:41 wrapper_checkpoint.txt
[2025-11-26 16:41:56] -rw-r--r--. 1 boincer umatlas     21367 Nov 26 16:41 stderr.txt
[2025-11-26 16:41:56] HITS file was successfully produced:
[2025-11-26 16:41:56] -rw-------. 1 boincer umatlas 905257770 Nov 26 16:39 shared/HITS.pool.root.1
[2025-11-26 16:41:56]  *** Contents of shared directory: ***
[2025-11-26 16:41:56] total 1292356
[2025-11-26 16:41:56] -rw-r--r--. 2 boincer umatlas 407598242 Nov 25 22:31 ATLAS.root_0
[2025-11-26 16:41:56] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 22:31 start_atlas.sh
[2025-11-26 16:41:56] -rw-r--r--. 2 boincer umatlas    590111 Nov 25 22:31 input.tar.gz
[2025-11-26 16:41:56] -rw-------. 1 boincer umatlas 905257770 Nov 26 16:39 HITS.pool.root.1
[2025-11-26 16:41:56] -rw-------. 1 boincer umatlas   9891840 Nov 26 16:41 result.tar.gz
16:41:59 (507251): run_atlas exited; CPU time 267377.437022
16:41:59 (507251): called boinc_finish(0)

</stderr_txt>
]]>

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