Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:00:37 (2304983): wrapper (7.7.26015): starting
00:00:37 (2304983): wrapper: running run_atlas (--nthreads 9)
[2025-11-26 00:00:37] Arguments: --nthreads 9
[2025-11-26 00:00:37] Threads: 9
[2025-11-26 00:00:37] Checking for CVMFS
[2025-11-26 00:00:38] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 00:00:38] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 00:00:38] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 00:00:38] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 00:00:38] 2.13.3.0 9371 29468 139588 153309 2 164 24722591 32935936 25907 16776704 0 158191632 99.772 91071859 34345 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-26 00:00:38] CVMFS is ok
[2025-11-26 00:00:38] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 00:00:38] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 00:00:38] Further information can be found at the LHC@home message board.
[2025-11-26 00:00:38] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 00:00:38] Checking for apptainer binary...
[2025-11-26 00:00:38] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 00:00:38] Running /usr/bin/apptainer --version
[2025-11-26 00:00:38] apptainer version 1.4.4-1.el9
[2025-11-26 00:00:38] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 00:00:38] c-8-1.aglt2.org
[2025-11-26 00:00:38] apptainer works
[2025-11-26 00:00:38] Set ATHENA_PROC_NUMBER=9
[2025-11-26 00:00:38] Set ATHENA_CORE_NUMBER=9
[2025-11-26 00:00:38] Starting ATLAS job with PandaID=6897488218
[2025-11-26 00:00:38] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 23:22:44]  *** The last 200 lines of the pilot log: ***
[2025-11-26 23:22:44] 2025-11-27 04:21:57,658 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 23:22:44] 2025-11-27 04:21:57,974 | INFO     | time since job start (84058s) is within the limit (172800.0s)
[2025-11-26 23:22:44] 2025-11-27 04:21:59,998 | INFO     | time since job start (84060s) is within the limit (172800.0s)
[2025-11-26 23:22:44] 2025-11-27 04:22:00,182 | INFO     | monitor loop #5632: job 0:6897488218 is in state 'finished'
[2025-11-26 23:22:44] 2025-11-27 04:22:00,182 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 23:22:44] 2025-11-27 04:22:02,053 | INFO     | time since job start (84063s) is within the limit (172800.0s)
[2025-11-26 23:22:44] 2025-11-27 04:22:02,694 | INFO     | monitor loop #5633: job 0:6897488218 is in state 'finished'
[2025-11-26 23:22:44] 2025-11-27 04:22:02,695 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 23:22:44] 2025-11-27 04:22:04,147 | INFO     | PID=2309160 has CPU usage=8.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-26 23:22:44] 2025-11-27 04:22:04,148 | INFO     | .. there are 44 such processes running
[2025-11-26 23:22:44] 2025-11-27 04:22:05,149 | INFO     | time since job start (84066s) is within the limit (172800.0s)
[2025-11-26 23:22:44] 2025-11-27 04:22:05,209 | INFO     | monitor loop #5634: job 0:6897488218 is in state 'finished'
[2025-11-26 23:22:44] 2025-11-27 04:22:05,209 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 23:22:44] 2025-11-27 04:22:07,156 | INFO     | time since job start (84068s) is within the limit (172800.0s)
[2025-11-26 23:22:44] 2025-11-27 04:22:07,745 | INFO     | monitor loop #5635: job 0:6897488218 is in state 'finished'
[2025-11-26 23:22:44] 2025-11-27 04:22:07,751 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 23:22:44] 2025-11-27 04:22:08,643 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-26 23:22:44] 2025-11-27 04:22:08,652 | INFO     | found 20 cores (10 cores per socket, 2 sockets) HT, CPU MHz: 2599.8074250000004
[2025-11-26 23:22:44] 2025-11-27 04:22:08,658 | INFO     | using path: /tmp/boinchome/slots/3/PanDA_Pilot-6897488218/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 23:22:44] 2025-11-27 04:22:08,659 | INFO     | extracted standard info from prmon json
[2025-11-26 23:22:44] 2025-11-27 04:22:08,659 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 23:22:44] 2025-11-27 04:22:08,659 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 23:22:44] 2025-11-27 04:22:08,682 | INFO     | fitting pss+swap vs Time
[2025-11-26 23:22:44] 2025-11-27 04:22:08,684 | INFO     | sum of square deviations: 809614994212.5615
[2025-11-26 23:22:44] 2025-11-27 04:22:08,817 | INFO     | sum of deviations: 4147946635012.277
[2025-11-26 23:22:44] 2025-11-27 04:22:08,818 | INFO     | mean x: 1764175278.8976035
[2025-11-26 23:22:44] 2025-11-27 04:22:08,818 | INFO     | mean y: 3065433.3565722588
[2025-11-26 23:22:44] 2025-11-27 04:22:08,818 | INFO     | intersect: -9035434302.919212
[2025-11-26 23:22:44] 2025-11-27 04:22:08,824 | INFO     | chi2: 19.18952645785614
[2025-11-26 23:22:44] 2025-11-27 04:22:08,826 | INFO     | sum of square deviations: 800827987823.519
[2025-11-26 23:22:44] 2025-11-27 04:22:08,928 | INFO     | sum of deviations: 4653335677058.53
[2025-11-26 23:22:44] 2025-11-27 04:22:08,929 | INFO     | mean x: 1764175126.4008746
[2025-11-26 23:22:44] 2025-11-27 04:22:08,929 | INFO     | mean y: 3074202.893586006
[2025-11-26 23:22:44] 2025-11-27 04:22:08,929 | INFO     | intersect: -10247939973.78569
[2025-11-26 23:22:44] 2025-11-27 04:22:08,931 | INFO     | chi2: 15.673204663332697
[2025-11-26 23:22:44] 2025-11-27 04:22:08,931 | INFO     | current chi2=15.673204663332697 (change=18.324171793639387 %)
[2025-11-26 23:22:44] 2025-11-27 04:22:08,931 | INFO     | right removable region: 1371
[2025-11-26 23:22:44] 2025-11-27 04:22:08,938 | INFO     | sum of square deviations: 800827233863.5189
[2025-11-26 23:22:44] 2025-11-27 04:22:09,125 | INFO     | sum of deviations: 3632775054410.262
[2025-11-26 23:22:44] 2025-11-27 04:22:09,125 | INFO     | mean x: 1764175431.4008746
[2025-11-26 23:22:44] 2025-11-27 04:22:09,125 | INFO     | mean y: 3074371.612244898
[2025-11-26 23:22:44] 2025-11-27 04:22:09,126 | INFO     | intersect: -7999716027.8571
[2025-11-26 23:22:44] 2025-11-27 04:22:09,133 | INFO     | chi2: 16.142431820554012
[2025-11-26 23:22:44] 2025-11-27 04:22:09,133 | INFO     | current chi2=16.142431820554012 (change=15.878946486741755 %)
[2025-11-26 23:22:44] 2025-11-27 04:22:09,133 | INFO     | left removable region: 10
[2025-11-26 23:22:44] 2025-11-27 04:22:09,135 | INFO     | sum of square deviations: 781719534015.1492
[2025-11-26 23:22:44] 2025-11-27 04:22:09,175 | INFO     | time since job start (84070s) is within the limit (172800.0s)
[2025-11-26 23:22:44] 2025-11-27 04:22:09,262 | INFO     | sum of deviations: 3963874285899.3223
[2025-11-26 23:22:44] 2025-11-27 04:22:09,262 | INFO     | mean x: 1764175400.9066863
[2025-11-26 23:22:44] 2025-11-27 04:22:09,262 | INFO     | mean y: 3089504.128581925
[2025-11-26 23:22:44] 2025-11-27 04:22:09,262 | INFO     | intersect: -8942535113.376017
[2025-11-26 23:22:44] 2025-11-27 04:22:09,265 | INFO     | chi2: 11.242715814999329
[2025-11-26 23:22:44] 2025-11-27 04:22:09,265 | INFO     | current memory leak: 5.07 B/s (using 1361 data points, chi2=11.24)
[2025-11-26 23:22:44] 2025-11-27 04:22:09,266 | INFO     | could have reported an average CPU frequency of 2599 MHz (50 samples)
[2025-11-26 23:22:44] 2025-11-27 04:22:09,267 | INFO     | ..............................
[2025-11-26 23:22:44] 2025-11-27 04:22:09,267 | INFO     | . Timing measurements:
[2025-11-26 23:22:44] 2025-11-27 04:22:09,267 | INFO     | . get job = 0 s
[2025-11-26 23:22:44] 2025-11-27 04:22:09,267 | INFO     | . initial setup = 3 s
[2025-11-26 23:22:44] 2025-11-27 04:22:09,267 | INFO     | . payload setup = 13 s
[2025-11-26 23:22:44] 2025-11-27 04:22:09,268 | INFO     | . stage-in = 0 s
[2025-11-26 23:22:44] 2025-11-27 04:22:09,268 | INFO     | . payload execution = 83992 s
[2025-11-26 23:22:44] 2025-11-27 04:22:09,268 | INFO     | . stage-out = 8 s
[2025-11-26 23:22:44] 2025-11-27 04:22:09,268 | INFO     | . log creation = 2 s
[2025-11-26 23:22:44] 2025-11-27 04:22:09,268 | INFO     | ..............................
[2025-11-26 23:22:44] 2025-11-27 04:22:09,923 | INFO     | 
[2025-11-26 23:22:44] 2025-11-27 04:22:09,923 | INFO     | job summary report
[2025-11-26 23:22:44] 2025-11-27 04:22:09,924 | INFO     | --------------------------------------------------
[2025-11-26 23:22:44] 2025-11-27 04:22:09,924 | INFO     | PanDA job id: 6897488218
[2025-11-26 23:22:44] 2025-11-27 04:22:09,924 | INFO     | task id: 47556161
[2025-11-26 23:22:44] 2025-11-27 04:22:09,924 | INFO     | errors: (none)
[2025-11-26 23:22:44] 2025-11-27 04:22:09,924 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 23:22:44] 2025-11-27 04:22:09,924 | INFO     | pilot state: finished 
[2025-11-26 23:22:44] 2025-11-27 04:22:09,924 | INFO     | transexitcode: 0
[2025-11-26 23:22:44] 2025-11-27 04:22:09,924 | INFO     | exeerrorcode: 0
[2025-11-26 23:22:44] 2025-11-27 04:22:09,924 | INFO     | exeerrordiag: 
[2025-11-26 23:22:44] 2025-11-27 04:22:09,925 | INFO     | exitcode: 0
[2025-11-26 23:22:44] 2025-11-27 04:22:09,925 | INFO     | exitmsg: OK
[2025-11-26 23:22:44] 2025-11-27 04:22:09,925 | INFO     | cpuconsumptiontime: 310938 s
[2025-11-26 23:22:44] 2025-11-27 04:22:09,925 | INFO     | nevents: 1000
[2025-11-26 23:22:44] 2025-11-27 04:22:09,925 | INFO     | neventsw: 0
[2025-11-26 23:22:44] 2025-11-27 04:22:09,925 | INFO     | pid: 2320048
[2025-11-26 23:22:44] 2025-11-27 04:22:09,925 | INFO     | pgrp: 2320048
[2025-11-26 23:22:44] 2025-11-27 04:22:09,925 | INFO     | corecount: 9
[2025-11-26 23:22:44] 2025-11-27 04:22:09,925 | INFO     | event service: False
[2025-11-26 23:22:44] 2025-11-27 04:22:09,925 | INFO     | sizes: {0: 2283437, 1: 2284122, 2: 2284321, 10: 2284583, 13: 2284611, 84009: 2350838, 84018: 2359832, 84021: 2359888, 84045: 2360134}
[2025-11-26 23:22:44] 2025-11-27 04:22:09,926 | INFO     | --------------------------------------------------
[2025-11-26 23:22:44] 2025-11-27 04:22:09,926 | INFO     | 
[2025-11-26 23:22:44] 2025-11-27 04:22:09,926 | INFO     | executing command: ls -lF /tmp/boinchome/slots/3
[2025-11-26 23:22:44] 2025-11-27 04:22:10,025 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 23:22:44] 2025-11-27 04:22:10,026 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 23:22:44] 2025-11-27 04:22:10,026 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 23:22:44] 2025-11-27 04:22:10,026 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 23:22:44] 2025-11-27 04:22:10,026 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 23:22:44] 2025-11-27 04:22:10,026 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 23:22:44] 2025-11-27 04:22:10,026 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 23:22:44] 2025-11-27 04:22:10,026 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 23:22:44] 2025-11-27 04:22:10,027 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 23:22:44] 2025-11-27 04:22:10,027 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 23:22:44] 2025-11-27 04:22:10,027 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 23:22:44] 2025-11-27 04:22:10,027 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 23:22:44] 2025-11-27 04:22:10,027 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 23:22:44] 2025-11-27 04:22:10,027 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 23:22:44] 2025-11-27 04:22:10,027 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 23:22:44] 2025-11-27 04:22:10,027 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 23:22:44] 2025-11-27 04:22:10,027 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 23:22:44] 2025-11-27 04:22:10,027 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 23:22:44] 2025-11-27 04:22:10,028 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 23:22:44] 2025-11-27 04:22:10,028 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 23:22:44] 2025-11-27 04:22:10,028 | INFO     | job 6897488218 has completed (purged errors)
[2025-11-26 23:22:44] 2025-11-27 04:22:10,028 | INFO     | overall cleanup function is called
[2025-11-26 23:22:44] 2025-11-27 04:22:11,063 | INFO     | --- collectZombieJob: --- 10, [2320048]
[2025-11-26 23:22:44] 2025-11-27 04:22:11,063 | INFO     | zombie collector waiting for pid 2320048
[2025-11-26 23:22:44] 2025-11-27 04:22:11,063 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 23:22:44] 2025-11-27 04:22:11,064 | INFO     | collected zombie processes
[2025-11-26 23:22:44] 2025-11-27 04:22:11,064 | INFO     | will attempt to kill all subprocesses of pid=2320048
[2025-11-26 23:22:44] 2025-11-27 04:22:12,343 | INFO     | process IDs to be killed: [2320048] (in reverse order)
[2025-11-26 23:22:44] 2025-11-27 04:22:12,563 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 23:22:44] 2025-11-27 04:22:12,564 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 23:22:44] 2025-11-27 04:22:12,631 | INFO     | did not find any defunct processes belonging to 2320048
[2025-11-26 23:22:44] 2025-11-27 04:22:12,688 | INFO     | did not find any defunct processes belonging to 2320048
[2025-11-26 23:22:44] 2025-11-27 04:22:12,725 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 23:22:44] 2025-11-27 04:22:12,726 | INFO     | ready for new job
[2025-11-26 23:22:44] 2025-11-27 04:22:12,726 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 23:22:44] 2025-11-27 04:22:12,730 | INFO     | ***************************************
[2025-11-26 23:22:44] 2025-11-27 04:22:12,730 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 23:22:44] 2025-11-27 04:22:12,730 | INFO     | ***************************************
[2025-11-26 23:22:44] 2025-11-27 04:22:12,730 | INFO     | 
[2025-11-26 23:22:44] 2025-11-27 04:22:12,732 | INFO     | architecture information:
[2025-11-26 23:22:44] 2025-11-27 04:22:12,733 | INFO     | executing command: cat /etc/os-release
[2025-11-26 23:22:44] 2025-11-27 04:22:12,781 | INFO     | cat /etc/os-release:
[2025-11-26 23:22:44] NAME="CentOS Linux"
[2025-11-26 23:22:44] VERSION="7 (Core)"
[2025-11-26 23:22:44] ID="centos"
[2025-11-26 23:22:44] ID_LIKE="rhel fedora"
[2025-11-26 23:22:44] VERSION_ID="7"
[2025-11-26 23:22:44] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 23:22:44] ANSI_COLOR="0;31"
[2025-11-26 23:22:44] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 23:22:44] HOME_URL="https://www.centos.org/"
[2025-11-26 23:22:44] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 23:22:44] 
[2025-11-26 23:22:44] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 23:22:44] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 23:22:44] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 23:22:44] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 23:22:44] 
[2025-11-26 23:22:44] 2025-11-27 04:22:12,784 | INFO     | ***************************************
[2025-11-26 23:22:44] 2025-11-27 04:22:13,287 | INFO     | executing command: df -mP /tmp/boinchome/slots/3
[2025-11-26 23:22:44] 2025-11-27 04:22:13,379 | INFO     | sufficient remaining disk space (72147271680 B)
[2025-11-26 23:22:44] 2025-11-27 04:22:13,380 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 23:22:44] 2025-11-27 04:22:13,380 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 23:22:44] 2025-11-27 04:22:13,380 | INFO     | update_server=False
[2025-11-26 23:22:44] 2025-11-27 04:22:13,380 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 23:22:44] 2025-11-27 04:22:13,381 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 23:22:44] 2025-11-27 04:22:13,814 | INFO     | all job control threads have been joined
[2025-11-26 23:22:44] 2025-11-27 04:22:13,841 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 23:22:44] 2025-11-27 04:22:13,841 | INFO     | aborting loop
[2025-11-26 23:22:44] 2025-11-27 04:22:13,871 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 23:22:44] 2025-11-27 04:22:13,903 | INFO     | all payload control threads have been joined
[2025-11-26 23:22:44] 2025-11-27 04:22:14,093 | INFO     | all data control threads have been joined
[2025-11-26 23:22:44] 2025-11-27 04:22:14,386 | INFO     | [job] retrieve thread has finished
[2025-11-26 23:22:44] 2025-11-27 04:22:14,438 | INFO     | [job] validate thread has finished
[2025-11-26 23:22:44] 2025-11-27 04:22:14,662 | INFO     | [payload] failed_post thread has finished
[2025-11-26 23:22:44] 2025-11-27 04:22:14,719 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 23:22:44] 2025-11-27 04:22:14,720 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 23:22:44] 2025-11-27 04:22:14,720 | INFO     | [data] copytool_in thread has finished
[2025-11-26 23:22:44] 2025-11-27 04:22:14,721 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 23:22:44] 2025-11-27 04:22:14,802 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 23:22:44] 2025-11-27 04:22:14,820 | INFO     | [job] control thread has finished
[2025-11-26 23:22:44] 2025-11-27 04:22:14,847 | INFO     | [job] job monitor thread has finished
[2025-11-26 23:22:44] 2025-11-27 04:22:14,908 | INFO     | [payload] control thread has finished
[2025-11-26 23:22:44] 2025-11-27 04:22:15,099 | INFO     | [data] control thread has finished
[2025-11-26 23:22:44] 2025-11-27 04:22:15,146 | INFO     | [payload] validate_post thread has finished
[2025-11-26 23:22:44] 2025-11-27 04:22:15,386 | INFO     | [data] copytool_out thread has finished
[2025-11-26 23:22:44] 2025-11-27 04:22:15,410 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 23:22:44] 2025-11-27 04:22:15,808 | INFO     | [job] queue monitor thread has finished
[2025-11-26 23:22:44] 2025-11-27 04:22:17,886 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 23:22:44] 2025-11-27 04:22:24,227 | INFO     | [monitor] cgroup control has ended
[2025-11-26 23:22:44] 2025-11-27 04:22:25,093 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140686943807296)>', '<ExcThread(monitor, started 140686150072064)>']
[2025-11-26 23:22:44] 2025-11-27 04:22:30,177 | INFO     | all workflow threads have been joined
[2025-11-26 23:22:44] 2025-11-27 04:22:30,177 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 23:22:44] 2025-11-27 04:22:30,178 | INFO     | traces error code: 0
[2025-11-26 23:22:44] 2025-11-27 04:22:30,178 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 23:22:44] 2025-11-27 04:22:43,104 | INFO     | PID=2309160 has CPU usage=4.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-26 23:22:44] 2025-11-27 04:22:43,105 | INFO     | .. there are 44 such processes running
[2025-11-26 23:22:44] 2025-11-27 04:22:43,105 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 23:22:44] 2025-11-27 04:22:43,105 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 23:22:44] 2025-11-27 04:22:43,106 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 23:22:44] 2025-11-27 04:22:43,106 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 23:22:44] 2025-11-27 04:22:43,106 | INFO     | [monitor] control thread has ended
[2025-11-26 23:22:44] 2025-11-27 04:22:43,417 [wrapper] ==== pilot stdout END ====
[2025-11-26 23:22:44] 2025-11-27 04:22:43,431 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 23:22:44] 2025-11-27 04:22:43,436 [wrapper] pilotpid: 2309160
[2025-11-26 23:22:44] 2025-11-27 04:22:43,439 [wrapper] Pilot exit status: 0
[2025-11-26 23:22:44] 2025-11-27 04:22:43,619 [wrapper] pandaids: 6897488218
[2025-11-26 23:22:44] 2025-11-27 04:22:43,798 [wrapper] cleanup supervisor_pilot 3780477 2309161
[2025-11-26 23:22:44] 2025-11-27 04:22:43,820 [wrapper] Test setup, not cleaning
[2025-11-26 23:22:44] 2025-11-27 04:22:43,835 [wrapper] apfmon messages muted
[2025-11-26 23:22:44] 2025-11-27 04:22:43,852 [wrapper] ==== wrapper stdout END ====
[2025-11-26 23:22:44] 2025-11-27 04:22:43,855 [wrapper] ==== wrapper stderr END ====
[2025-11-26 23:22:44]  *** Error codes and diagnostics ***
[2025-11-26 23:22:44]     "exeErrorCode": 0,
[2025-11-26 23:22:44]     "exeErrorDiag": "",
[2025-11-26 23:22:44]     "pilotErrorCode": 0,
[2025-11-26 23:22:44]     "pilotErrorDiag": "",
[2025-11-26 23:22:44]  *** Listing of results directory ***
[2025-11-26 23:22:44] total 1336172
[2025-11-26 23:22:44] -rw-r--r--. 1 boincer umatlas    576529 Nov 25 11:48 pilot3.tar.gz
[2025-11-26 23:22:44] -rw-r--r--. 1 boincer umatlas      5112 Nov 25 11:55 queuedata.json
[2025-11-26 23:22:44] -rwx------. 1 boincer umatlas     36292 Nov 25 11:57 runpilot2-wrapper.sh
[2025-11-26 23:22:44] -rw-r--r--. 1 boincer umatlas       100 Nov 26 00:00 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 23:22:44] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 26 00:00 run_atlas
[2025-11-26 23:22:44] -rw-r--r--. 1 boincer umatlas       105 Nov 26 00:00 job.xml
[2025-11-26 23:22:44] -rw-r--r--. 2 boincer umatlas 407598242 Nov 26 00:00 EVNT.47483658._002264.pool.root.1
[2025-11-26 23:22:44] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 00:00 start_atlas.sh
[2025-11-26 23:22:44] drwxrwx--x. 2 boincer umatlas      4096 Nov 26 00:00 shared
[2025-11-26 23:22:44] -rw-r--r--. 2 boincer umatlas    590108 Nov 26 00:00 input.tar.gz
[2025-11-26 23:22:44] -rw-r--r--. 1 boincer umatlas         0 Nov 26 00:00 boinc_lockfile
[2025-11-26 23:22:44] -rw-r--r--. 1 boincer umatlas      2786 Nov 26 00:00 pandaJob.out
[2025-11-26 23:22:44] -rw-------. 1 boincer umatlas        57 Nov 26 00:00 setup.sh.local
[2025-11-26 23:22:44] -rw-------. 1 boincer umatlas    991877 Nov 26 00:00 agis_schedconf.cvmfs.json
[2025-11-26 23:22:44] drwx------. 5 boincer umatlas      4096 Nov 26 00:01 pilot3
[2025-11-26 23:22:44] -rw-r--r--. 1 boincer umatlas       533 Nov 26 22:43 boinc_task_state.xml
[2025-11-26 23:22:44] -rw-------. 1 boincer umatlas 928621354 Nov 26 23:20 HITS.47556161._002479.pool.root.1
[2025-11-26 23:22:44] -rw-------. 1 boincer umatlas      1081 Nov 26 23:21 memory_monitor_summary.json
[2025-11-26 23:22:44] -rw-r--r--. 1 boincer umatlas      6660 Nov 26 23:21 init_data.xml
[2025-11-26 23:22:44] -rw-------. 1 boincer umatlas   1516240 Nov 26 23:21 agis_ddmendpoints.agis.ALL.json
[2025-11-26 23:22:44] -rw-------. 1 boincer umatlas   2608948 Nov 26 23:21 log.47556161._002479.job.log.tgz.1
[2025-11-26 23:22:44] -rw-------. 1 boincer umatlas        95 Nov 26 23:22 pilot_heartbeat.json
[2025-11-26 23:22:44] -rw-------. 1 boincer umatlas      7990 Nov 26 23:22 heartbeat.json
[2025-11-26 23:22:44] -rw-r--r--. 1 boincer umatlas        29 Nov 26 23:22 wrapper_checkpoint.txt
[2025-11-26 23:22:44] -rw-------. 1 boincer umatlas       823 Nov 26 23:22 pilotlog.txt
[2025-11-26 23:22:44] -rw-------. 1 boincer umatlas  11445993 Nov 26 23:22 log.47556161._002479.job.log.1
[2025-11-26 23:22:44] -rw-r--r--. 1 boincer umatlas      8192 Nov 26 23:22 boinc_mmap_file
[2025-11-26 23:22:44] -rw-------. 1 boincer umatlas       353 Nov 26 23:22 output.list
[2025-11-26 23:22:44] -rw-r--r--. 1 boincer umatlas       620 Nov 26 23:22 runtime_log
[2025-11-26 23:22:44] -rw-------. 1 boincer umatlas  14069760 Nov 26 23:22 result.tar.gz
[2025-11-26 23:22:44] -rw-r--r--. 1 boincer umatlas      9328 Nov 26 23:22 runtime_log.err
[2025-11-26 23:22:44] -rw-------. 1 boincer umatlas       662 Nov 26 23:22 kOqMDmMXBi8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmwXMKDmZp3m1m.diag
[2025-11-26 23:22:44] -rw-r--r--. 1 boincer umatlas     21861 Nov 26 23:22 stderr.txt
[2025-11-26 23:22:44] HITS file was successfully produced:
[2025-11-26 23:22:45] -rw-------. 1 boincer umatlas 928621354 Nov 26 23:20 shared/HITS.pool.root.1
[2025-11-26 23:22:45]  *** Contents of shared directory: ***
[2025-11-26 23:22:45] total 1319252
[2025-11-26 23:22:45] -rw-r--r--. 2 boincer umatlas 407598242 Nov 26 00:00 ATLAS.root_0
[2025-11-26 23:22:45] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 00:00 start_atlas.sh
[2025-11-26 23:22:45] -rw-r--r--. 2 boincer umatlas    590108 Nov 26 00:00 input.tar.gz
[2025-11-26 23:22:45] -rw-------. 1 boincer umatlas 928621354 Nov 26 23:20 HITS.pool.root.1
[2025-11-26 23:22:45] -rw-------. 1 boincer umatlas  14069760 Nov 26 23:22 result.tar.gz
23:22:46 (2304983): run_atlas exited; CPU time 313531.967256
23:22:46 (2304983): called boinc_finish(0)

</stderr_txt>
]]>

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