Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:03:39 (156644): wrapper (7.7.26015): starting
00:03:39 (156644): wrapper: running run_atlas (--nthreads 8)
[2025-11-26 00:03:39] Arguments: --nthreads 8
[2025-11-26 00:03:39] Threads: 8
[2025-11-26 00:03:39] Checking for CVMFS
[2025-11-26 00:03:40] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 00:03:41] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 00:03:41] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 00:03:42] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 00:03:42] 2.13.3.0 11334 29605 331920 153309 1 175 24909782 32935937 28634 16776704 0 127428621 99.505 171552416 41133 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-26 00:03:42] CVMFS is ok
[2025-11-26 00:03:42] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 00:03:42] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 00:03:42] Further information can be found at the LHC@home message board.
[2025-11-26 00:03:42] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 00:03:42] Checking for apptainer binary...
[2025-11-26 00:03:42] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 00:03:42] Running /usr/bin/apptainer --version
[2025-11-26 00:03:42] apptainer version 1.4.4-1.el9
[2025-11-26 00:03:42] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 00:03:42] c6-4-5-2.aglt2.org
[2025-11-26 00:03:42] apptainer works
[2025-11-26 00:03:42] Set ATHENA_PROC_NUMBER=8
[2025-11-26 00:03:42] Set ATHENA_CORE_NUMBER=8
[2025-11-26 00:03:42] Starting ATLAS job with PandaID=6897394561
[2025-11-26 00:03:42] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 18:15:42]  *** The last 200 lines of the pilot log: ***
[2025-11-26 18:15:42] 2025-11-26 23:14:29,480 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 18:15:42] 2025-11-26 23:14:31,055 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-26 18:15:42] 2025-11-26 23:14:31,067 | INFO     | found 32 cores (16 cores per socket, 2 sockets) HT, CPU MHz: 3227.7487343750004
[2025-11-26 18:15:42] 2025-11-26 23:14:31,076 | INFO     | using path: /tmp/boinchome/slots/5/PanDA_Pilot-6897394561/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 18:15:42] 2025-11-26 23:14:31,080 | INFO     | extracted standard info from prmon json
[2025-11-26 18:15:42] 2025-11-26 23:14:31,080 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 18:15:42] 2025-11-26 23:14:31,080 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 18:15:42] 2025-11-26 23:14:31,126 | INFO     | fitting pss+swap vs Time
[2025-11-26 18:15:42] 2025-11-26 23:14:31,127 | INFO     | sum of square deviations: 379863789299.9403
[2025-11-26 18:15:42] 2025-11-26 23:14:31,152 | INFO     | sum of deviations: 2909402944822.7104
[2025-11-26 18:15:42] 2025-11-26 23:14:31,158 | INFO     | mean x: 1764166212.9925234
[2025-11-26 18:15:42] 2025-11-26 23:14:31,158 | INFO     | mean y: 2876762.714018692
[2025-11-26 18:15:42] 2025-11-26 23:14:31,158 | INFO     | intersect: -13508993859.901243
[2025-11-26 18:15:42] 2025-11-26 23:14:31,159 | INFO     | chi2: 15.197254243513711
[2025-11-26 18:15:42] 2025-11-26 23:14:31,161 | INFO     | sum of square deviations: 374563580886.2214
[2025-11-26 18:15:42] 2025-11-26 23:14:31,176 | INFO     | time since job start (65391s) is within the limit (172800.0s)
[2025-11-26 18:15:42] 2025-11-26 23:14:31,203 | INFO     | sum of deviations: 3277989139116.418
[2025-11-26 18:15:42] 2025-11-26 23:14:31,203 | INFO     | mean x: 1764166060.4948356
[2025-11-26 18:15:42] 2025-11-26 23:14:31,203 | INFO     | mean y: 2887366.4394366196
[2025-11-26 18:15:42] 2025-11-26 23:14:31,203 | INFO     | intersect: -15436192888.553392
[2025-11-26 18:15:42] 2025-11-26 23:14:31,204 | INFO     | chi2: 11.877456047592457
[2025-11-26 18:15:42] 2025-11-26 23:14:31,209 | INFO     | current chi2=11.877456047592457 (change=21.844723676569185 %)
[2025-11-26 18:15:42] 2025-11-26 23:14:31,209 | INFO     | right removable region: 1064
[2025-11-26 18:15:42] 2025-11-26 23:14:31,210 | INFO     | sum of square deviations: 374563259416.2212
[2025-11-26 18:15:42] 2025-11-26 23:14:31,250 | INFO     | sum of deviations: 2485239142811.702
[2025-11-26 18:15:42] 2025-11-26 23:14:31,250 | INFO     | mean x: 1764166365.4948356
[2025-11-26 18:15:42] 2025-11-26 23:14:31,250 | INFO     | mean y: 2888964.2187793427
[2025-11-26 18:15:42] 2025-11-26 23:14:31,250 | INFO     | intersect: -11702410997.109322
[2025-11-26 18:15:42] 2025-11-26 23:14:31,256 | INFO     | chi2: 11.098653526006938
[2025-11-26 18:15:42] 2025-11-26 23:14:31,256 | INFO     | current chi2=11.098653526006938 (change=26.969350198612908 %)
[2025-11-26 18:15:42] 2025-11-26 23:14:31,257 | INFO     | sum of square deviations: 369312265344.9912
[2025-11-26 18:15:42] 2025-11-26 23:14:31,296 | INFO     | sum of deviations: 2113436638777.6829
[2025-11-26 18:15:42] 2025-11-26 23:14:31,297 | INFO     | mean x: 1764166517.9971697
[2025-11-26 18:15:42] 2025-11-26 23:14:31,297 | INFO     | mean y: 2899761.5603773585
[2025-11-26 18:15:42] 2025-11-26 23:14:31,297 | INFO     | intersect: -10092768608.828432
[2025-11-26 18:15:42] 2025-11-26 23:14:31,298 | INFO     | chi2: 8.074856915998513
[2025-11-26 18:15:42] 2025-11-26 23:14:31,298 | INFO     | current chi2=8.074856915998513 (change=27.244715792982532 %)
[2025-11-26 18:15:42] 2025-11-26 23:14:31,303 | INFO     | sum of square deviations: 364110574523.7493
[2025-11-26 18:15:42] 2025-11-26 23:14:31,339 | INFO     | sum of deviations: 1881973549811.5662
[2025-11-26 18:15:42] 2025-11-26 23:14:31,344 | INFO     | mean x: 1764166670.499526
[2025-11-26 18:15:42] 2025-11-26 23:14:31,344 | INFO     | mean y: 2906543.1279620854
[2025-11-26 18:15:42] 2025-11-26 23:14:31,344 | INFO     | intersect: -9115518582.761065
[2025-11-26 18:15:42] 2025-11-26 23:14:31,345 | INFO     | chi2: 6.93956522399273
[2025-11-26 18:15:42] 2025-11-26 23:14:31,345 | INFO     | current chi2=6.93956522399273 (change=14.059588966294347 %)
[2025-11-26 18:15:42] 2025-11-26 23:14:31,345 | INFO     | left removable region: 30
[2025-11-26 18:15:42] 2025-11-26 23:14:31,347 | INFO     | sum of square deviations: 342797706585.0003
[2025-11-26 18:15:42] 2025-11-26 23:14:31,383 | INFO     | sum of deviations: 2112562695671.2446
[2025-11-26 18:15:42] 2025-11-26 23:14:31,383 | INFO     | mean x: 1764166944.999033
[2025-11-26 18:15:42] 2025-11-26 23:14:31,383 | INFO     | mean y: 2926621.247582205
[2025-11-26 18:15:42] 2025-11-26 23:14:31,383 | INFO     | intersect: -10869121835.754374
[2025-11-26 18:15:42] 2025-11-26 23:14:31,384 | INFO     | chi2: 2.5643157569585027
[2025-11-26 18:15:42] 2025-11-26 23:14:31,384 | INFO     | current memory leak: 6.16 B/s (using 1034 data points, chi2=2.56)
[2025-11-26 18:15:42] 2025-11-26 23:14:31,385 | INFO     | could have reported an average CPU frequency of 3145 MHz (39 samples)
[2025-11-26 18:15:42] 2025-11-26 23:14:31,386 | INFO     | ..............................
[2025-11-26 18:15:42] 2025-11-26 23:14:31,386 | INFO     | . Timing measurements:
[2025-11-26 18:15:42] 2025-11-26 23:14:31,386 | INFO     | . get job = 0 s
[2025-11-26 18:15:42] 2025-11-26 23:14:31,386 | INFO     | . initial setup = 5 s
[2025-11-26 18:15:42] 2025-11-26 23:14:31,386 | INFO     | . payload setup = 38 s
[2025-11-26 18:15:42] 2025-11-26 23:14:31,386 | INFO     | . stage-in = 0 s
[2025-11-26 18:15:42] 2025-11-26 23:14:31,386 | INFO     | . payload execution = 65254 s
[2025-11-26 18:15:42] 2025-11-26 23:14:31,386 | INFO     | . stage-out = 8 s
[2025-11-26 18:15:42] 2025-11-26 23:14:31,386 | INFO     | . log creation = 2 s
[2025-11-26 18:15:42] 2025-11-26 23:14:31,386 | INFO     | ..............................
[2025-11-26 18:15:42] 2025-11-26 23:14:31,663 | INFO     | 
[2025-11-26 18:15:42] 2025-11-26 23:14:31,663 | INFO     | job summary report
[2025-11-26 18:15:42] 2025-11-26 23:14:31,663 | INFO     | --------------------------------------------------
[2025-11-26 18:15:42] 2025-11-26 23:14:31,663 | INFO     | PanDA job id: 6897394561
[2025-11-26 18:15:42] 2025-11-26 23:14:31,663 | INFO     | task id: 47556173
[2025-11-26 18:15:42] 2025-11-26 23:14:31,663 | INFO     | errors: (none)
[2025-11-26 18:15:42] 2025-11-26 23:14:31,663 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 18:15:42] 2025-11-26 23:14:31,663 | INFO     | pilot state: finished 
[2025-11-26 18:15:42] 2025-11-26 23:14:31,664 | INFO     | transexitcode: 0
[2025-11-26 18:15:42] 2025-11-26 23:14:31,664 | INFO     | exeerrorcode: 0
[2025-11-26 18:15:42] 2025-11-26 23:14:31,664 | INFO     | exeerrordiag: 
[2025-11-26 18:15:42] 2025-11-26 23:14:31,664 | INFO     | exitcode: 0
[2025-11-26 18:15:42] 2025-11-26 23:14:31,664 | INFO     | exitmsg: OK
[2025-11-26 18:15:42] 2025-11-26 23:14:31,664 | INFO     | cpuconsumptiontime: 228115 s
[2025-11-26 18:15:42] 2025-11-26 23:14:31,664 | INFO     | nevents: 1000
[2025-11-26 18:15:42] 2025-11-26 23:14:31,664 | INFO     | neventsw: 0
[2025-11-26 18:15:42] 2025-11-26 23:14:31,664 | INFO     | pid: 178259
[2025-11-26 18:15:42] 2025-11-26 23:14:31,664 | INFO     | pgrp: 178259
[2025-11-26 18:15:42] 2025-11-26 23:14:31,664 | INFO     | corecount: 8
[2025-11-26 18:15:42] 2025-11-26 23:14:31,664 | INFO     | event service: False
[2025-11-26 18:15:42] 2025-11-26 23:14:31,664 | INFO     | sizes: {0: 2284092, 1: 2284291, 12: 2284291, 23: 2284319, 27: 2284609, 34: 2284637, 65294: 2341245, 65295: 2341244, 65304: 2350294, 65305: 2350350, 65328: 2350596}
[2025-11-26 18:15:42] 2025-11-26 23:14:31,664 | INFO     | --------------------------------------------------
[2025-11-26 18:15:42] 2025-11-26 23:14:31,664 | INFO     | 
[2025-11-26 18:15:42] 2025-11-26 23:14:31,665 | INFO     | executing command: ls -lF /tmp/boinchome/slots/5
[2025-11-26 18:15:42] 2025-11-26 23:14:31,706 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 18:15:42] 2025-11-26 23:14:31,706 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 18:15:42] 2025-11-26 23:14:31,706 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 18:15:42] 2025-11-26 23:14:31,706 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 18:15:42] 2025-11-26 23:14:31,706 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 18:15:42] 2025-11-26 23:14:31,706 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 18:15:42] 2025-11-26 23:14:31,707 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 18:15:42] 2025-11-26 23:14:31,707 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 18:15:42] 2025-11-26 23:14:31,707 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 18:15:42] 2025-11-26 23:14:31,707 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 18:15:42] 2025-11-26 23:14:31,707 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 18:15:42] 2025-11-26 23:14:31,707 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 18:15:42] 2025-11-26 23:14:31,707 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 18:15:42] 2025-11-26 23:14:31,707 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 18:15:42] 2025-11-26 23:14:31,707 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 18:15:42] 2025-11-26 23:14:31,707 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 18:15:42] 2025-11-26 23:14:31,707 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 18:15:42] 2025-11-26 23:14:31,707 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 18:15:42] 2025-11-26 23:14:31,707 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 18:15:42] 2025-11-26 23:14:31,707 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 18:15:42] 2025-11-26 23:14:31,708 | INFO     | job 6897394561 has completed (purged errors)
[2025-11-26 18:15:42] 2025-11-26 23:14:31,708 | INFO     | overall cleanup function is called
[2025-11-26 18:15:42] 2025-11-26 23:14:32,724 | INFO     | --- collectZombieJob: --- 10, [178259]
[2025-11-26 18:15:42] 2025-11-26 23:14:32,724 | INFO     | zombie collector waiting for pid 178259
[2025-11-26 18:15:42] 2025-11-26 23:14:32,724 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 18:15:42] 2025-11-26 23:14:32,724 | INFO     | collected zombie processes
[2025-11-26 18:15:42] 2025-11-26 23:14:32,724 | INFO     | will attempt to kill all subprocesses of pid=178259
[2025-11-26 18:15:42] 2025-11-26 23:14:34,831 | INFO     | process IDs to be killed: [178259] (in reverse order)
[2025-11-26 18:15:42] 2025-11-26 23:14:34,874 | INFO     | PID=161934 has CPU usage=4.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-26 18:15:42] 2025-11-26 23:14:34,874 | INFO     | .. there are 47 such processes running
[2025-11-26 18:15:42] 2025-11-26 23:14:35,050 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 18:15:42] 2025-11-26 23:14:35,050 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 18:15:42] 2025-11-26 23:14:35,153 | INFO     | did not find any defunct processes belonging to 178259
[2025-11-26 18:15:42] 2025-11-26 23:14:35,169 | INFO     | did not find any defunct processes belonging to 178259
[2025-11-26 18:15:42] 2025-11-26 23:14:35,170 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 18:15:42] 2025-11-26 23:14:35,171 | INFO     | ready for new job
[2025-11-26 18:15:42] 2025-11-26 23:14:35,171 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 18:15:42] 2025-11-26 23:14:35,176 | INFO     | ***************************************
[2025-11-26 18:15:42] 2025-11-26 23:14:35,176 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 18:15:42] 2025-11-26 23:14:35,176 | INFO     | ***************************************
[2025-11-26 18:15:42] 2025-11-26 23:14:35,176 | INFO     | 
[2025-11-26 18:15:42] 2025-11-26 23:14:35,180 | INFO     | architecture information:
[2025-11-26 18:15:42] 2025-11-26 23:14:35,180 | INFO     | executing command: cat /etc/os-release
[2025-11-26 18:15:42] 2025-11-26 23:14:35,247 | INFO     | cat /etc/os-release:
[2025-11-26 18:15:42] NAME="CentOS Linux"
[2025-11-26 18:15:42] VERSION="7 (Core)"
[2025-11-26 18:15:42] ID="centos"
[2025-11-26 18:15:42] ID_LIKE="rhel fedora"
[2025-11-26 18:15:42] VERSION_ID="7"
[2025-11-26 18:15:42] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 18:15:42] ANSI_COLOR="0;31"
[2025-11-26 18:15:42] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 18:15:42] HOME_URL="https://www.centos.org/"
[2025-11-26 18:15:42] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 18:15:42] 
[2025-11-26 18:15:42] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 18:15:42] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 18:15:42] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 18:15:42] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 18:15:42] 
[2025-11-26 18:15:42] 2025-11-26 23:14:35,249 | INFO     | ***************************************
[2025-11-26 18:15:42] 2025-11-26 23:14:35,755 | INFO     | executing command: df -mP /tmp/boinchome/slots/5
[2025-11-26 18:15:42] 2025-11-26 23:14:35,839 | INFO     | sufficient remaining disk space (71746715648 B)
[2025-11-26 18:15:42] 2025-11-26 23:14:35,839 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 18:15:42] 2025-11-26 23:14:35,840 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 18:15:42] 2025-11-26 23:14:35,840 | INFO     | update_server=False
[2025-11-26 18:15:42] 2025-11-26 23:14:35,840 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 18:15:42] 2025-11-26 23:14:35,841 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 18:15:42] 2025-11-26 23:14:35,841 | INFO     | aborting loop
[2025-11-26 18:15:42] 2025-11-26 23:14:35,841 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 18:15:42] 2025-11-26 23:14:35,848 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-11-26 18:15:42] 2025-11-26 23:14:35,848 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 18:15:42] 2025-11-26 23:14:35,848 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 18:15:42] 2025-11-26 23:14:35,848 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 18:15:42] 2025-11-26 23:14:36,214 | INFO     | all payload control threads have been joined
[2025-11-26 18:15:42] 2025-11-26 23:14:36,488 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 18:15:42] 2025-11-26 23:14:36,511 | INFO     | all data control threads have been joined
[2025-11-26 18:15:42] 2025-11-26 23:14:36,602 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 18:15:42] 2025-11-26 23:14:36,846 | INFO     | [job] job monitor thread has finished
[2025-11-26 18:15:42] 2025-11-26 23:14:36,852 | INFO     | [job] retrieve thread has finished
[2025-11-26 18:15:42] 2025-11-26 23:14:37,104 | INFO     | [payload] failed_post thread has finished
[2025-11-26 18:15:42] 2025-11-26 23:14:37,220 | INFO     | [payload] control thread has finished
[2025-11-26 18:15:42] 2025-11-26 23:14:37,296 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 18:15:42] 2025-11-26 23:14:37,296 | INFO     | [data] copytool_in thread has finished
[2025-11-26 18:15:42] 2025-11-26 23:14:37,494 | INFO     | [job] queue monitor thread has finished
[2025-11-26 18:15:42] 2025-11-26 23:14:37,517 | INFO     | [data] control thread has finished
[2025-11-26 18:15:42] 2025-11-26 23:14:37,612 | INFO     | all job control threads have been joined
[2025-11-26 18:15:42] 2025-11-26 23:14:37,749 | INFO     | [job] validate thread has finished
[2025-11-26 18:15:42] 2025-11-26 23:14:37,850 | INFO     | [data] copytool_out thread has finished
[2025-11-26 18:15:42] 2025-11-26 23:14:37,961 | INFO     | [payload] validate_post thread has finished
[2025-11-26 18:15:42] 2025-11-26 23:14:38,233 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 18:15:42] 2025-11-26 23:14:38,263 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 18:15:42] 2025-11-26 23:14:38,269 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 18:15:42] 2025-11-26 23:14:38,618 | INFO     | [job] control thread has finished
[2025-11-26 18:15:42] 2025-11-26 23:14:40,611 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 18:15:42] 2025-11-26 23:15:33,892 | INFO     | [monitor] cgroup control has ended
[2025-11-26 18:15:42] 2025-11-26 23:15:35,161 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139899142121280)>', '<ExcThread(monitor, started 139898786916096)>']
[2025-11-26 18:15:42] 2025-11-26 23:15:35,273 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 18:15:42] 2025-11-26 23:15:35,273 | INFO     | [monitor] control thread has ended
[2025-11-26 18:15:42] 2025-11-26 23:15:40,188 | INFO     | all workflow threads have been joined
[2025-11-26 18:15:42] 2025-11-26 23:15:40,188 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 18:15:42] 2025-11-26 23:15:40,188 | INFO     | traces error code: 0
[2025-11-26 18:15:42] 2025-11-26 23:15:40,188 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 18:15:42] 2025-11-26 23:15:41,084 [wrapper] ==== pilot stdout END ====
[2025-11-26 18:15:42] 2025-11-26 23:15:41,114 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 18:15:42] 2025-11-26 23:15:41,132 [wrapper] pilotpid: 161934
[2025-11-26 18:15:42] 2025-11-26 23:15:41,162 [wrapper] Pilot exit status: 0
[2025-11-26 18:15:42] 2025-11-26 23:15:41,250 [wrapper] pandaids: 6897394561
[2025-11-26 18:15:42] 2025-11-26 23:15:41,624 [wrapper] cleanup supervisor_pilot 1735027 161935
[2025-11-26 18:15:42] 2025-11-26 23:15:41,665 [wrapper] Test setup, not cleaning
[2025-11-26 18:15:42] 2025-11-26 23:15:41,713 [wrapper] apfmon messages muted
[2025-11-26 18:15:42] 2025-11-26 23:15:41,717 [wrapper] ==== wrapper stdout END ====
[2025-11-26 18:15:42] 2025-11-26 23:15:41,751 [wrapper] ==== wrapper stderr END ====
[2025-11-26 18:15:42]  *** Error codes and diagnostics ***
[2025-11-26 18:15:42]     "exeErrorCode": 0,
[2025-11-26 18:15:42]     "exeErrorDiag": "",
[2025-11-26 18:15:42]     "pilotErrorCode": 0,
[2025-11-26 18:15:42]     "pilotErrorDiag": "",
[2025-11-26 18:15:42]  *** Listing of results directory ***
[2025-11-26 18:15:42] total 1329504
[2025-11-26 18:15:42] -rw-r--r--. 1 boincer umatlas    576529 Nov 25 11:48 pilot3.tar.gz
[2025-11-26 18:15:42] -rw-r--r--. 1 boincer umatlas      5112 Nov 25 11:55 queuedata.json
[2025-11-26 18:15:42] -rwx------. 1 boincer umatlas     36292 Nov 25 11:57 runpilot2-wrapper.sh
[2025-11-26 18:15:42] -rw-r--r--. 1 boincer umatlas       100 Nov 26 00:03 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 18:15:42] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 26 00:03 run_atlas
[2025-11-26 18:15:42] -rw-r--r--. 1 boincer umatlas       105 Nov 26 00:03 job.xml
[2025-11-26 18:15:42] -rw-r--r--. 2 boincer umatlas 407436601 Nov 26 00:03 EVNT.47483658._003099.pool.root.1
[2025-11-26 18:15:42] -rw-r--r--. 2 boincer umatlas    590109 Nov 26 00:03 input.tar.gz
[2025-11-26 18:15:42] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 00:03 start_atlas.sh
[2025-11-26 18:15:42] drwxrwx--x. 2 boincer umatlas      4096 Nov 26 00:03 shared
[2025-11-26 18:15:42] -rw-r--r--. 1 boincer umatlas         0 Nov 26 00:03 boinc_lockfile
[2025-11-26 18:15:42] -rw-r--r--. 1 boincer umatlas      2785 Nov 26 00:03 pandaJob.out
[2025-11-26 18:15:42] -rw-------. 1 boincer umatlas        57 Nov 26 00:03 setup.sh.local
[2025-11-26 18:15:42] -rw-------. 1 boincer umatlas    991877 Nov 26 00:04 agis_schedconf.cvmfs.json
[2025-11-26 18:15:42] drwx------. 5 boincer umatlas      4096 Nov 26 00:04 pilot3
[2025-11-26 18:15:42] -rw-r--r--. 1 boincer umatlas       533 Nov 26 17:57 boinc_task_state.xml
[2025-11-26 18:15:42] -rw-------. 1 boincer umatlas 927783130 Nov 26 18:12 HITS.47556173._000803.pool.root.1
[2025-11-26 18:15:42] -rw-r--r--. 1 boincer umatlas      6876 Nov 26 18:13 init_data.xml
[2025-11-26 18:15:42] -rw-------. 1 boincer umatlas      1058 Nov 26 18:13 memory_monitor_summary.json
[2025-11-26 18:15:42] -rw-------. 1 boincer umatlas   1516240 Nov 26 18:14 agis_ddmendpoints.agis.ALL.json
[2025-11-26 18:15:42] -rw-------. 1 boincer umatlas   2241268 Nov 26 18:14 log.47556173._000803.job.log.tgz.1
[2025-11-26 18:15:42] -rw-------. 1 boincer umatlas        95 Nov 26 18:14 pilot_heartbeat.json
[2025-11-26 18:15:42] -rw-------. 1 boincer umatlas      8616 Nov 26 18:14 heartbeat.json
[2025-11-26 18:15:42] -rw-r--r--. 1 boincer umatlas        29 Nov 26 18:15 wrapper_checkpoint.txt
[2025-11-26 18:15:42] -rw-------. 1 boincer umatlas      4552 Nov 26 18:15 pilotlog.txt
[2025-11-26 18:15:42] -rw-------. 1 boincer umatlas   8894103 Nov 26 18:15 log.47556173._000803.job.log.1
[2025-11-26 18:15:42] -rw-------. 1 boincer umatlas       353 Nov 26 18:15 output.list
[2025-11-26 18:15:42] -rw-r--r--. 1 boincer umatlas       620 Nov 26 18:15 runtime_log
[2025-11-26 18:15:42] -rw-------. 1 boincer umatlas  11151360 Nov 26 18:15 result.tar.gz
[2025-11-26 18:15:42] -rw-r--r--. 1 boincer umatlas      8192 Nov 26 18:15 boinc_mmap_file
[2025-11-26 18:15:42] -rw-r--r--. 1 boincer umatlas      9343 Nov 26 18:15 runtime_log.err
[2025-11-26 18:15:42] -rw-------. 1 boincer umatlas       661 Nov 26 18:15 aKxMDmOXBi8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmbcJKDmhttC3n.diag
[2025-11-26 18:15:42] -rw-r--r--. 1 boincer umatlas     21406 Nov 26 18:15 stderr.txt
[2025-11-26 18:15:42] HITS file was successfully produced:
[2025-11-26 18:15:42] -rw-------. 1 boincer umatlas 927783130 Nov 26 18:12 shared/HITS.pool.root.1
[2025-11-26 18:15:42]  *** Contents of shared directory: ***
[2025-11-26 18:15:42] total 1315424
[2025-11-26 18:15:42] -rw-r--r--. 2 boincer umatlas 407436601 Nov 26 00:03 ATLAS.root_0
[2025-11-26 18:15:42] -rw-r--r--. 2 boincer umatlas    590109 Nov 26 00:03 input.tar.gz
[2025-11-26 18:15:42] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 00:03 start_atlas.sh
[2025-11-26 18:15:42] -rw-------. 1 boincer umatlas 927783130 Nov 26 18:12 HITS.pool.root.1
[2025-11-26 18:15:42] -rw-------. 1 boincer umatlas  11151360 Nov 26 18:15 result.tar.gz
18:16:04 (156644): run_atlas exited; CPU time 229885.930170
18:16:04 (156644): called boinc_finish(0)

</stderr_txt>
]]>

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