Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
22:28:19 (3456854): wrapper (7.7.26015): starting
22:28:19 (3456854): wrapper: running run_atlas (--nthreads 9)
[2025-11-25 22:28:19] Arguments: --nthreads 9
[2025-11-25 22:28:19] Threads: 9
[2025-11-25 22:28:19] Checking for CVMFS
[2025-11-25 22:28:19] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 22:28:20] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 22:28:20] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 22:28:20] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 22:28:20] 2.13.3.0 16090 29462 430576 153307 3 623 21848070 32935937 58599 16776704 0 414096679 99.629 374168536 52839 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-25 22:28:20] CVMFS is ok
[2025-11-25 22:28:20] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 22:28:20] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 22:28:20] Further information can be found at the LHC@home message board.
[2025-11-25 22:28:20] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 22:28:20] Checking for apptainer binary...
[2025-11-25 22:28:20] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 22:28:20] Running /usr/bin/apptainer --version
[2025-11-25 22:28:20] apptainer version 1.4.4-1.el9
[2025-11-25 22:28:20] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 22:28:21] c7-9-15.aglt2.org
[2025-11-25 22:28:21] apptainer works
[2025-11-25 22:28:21] Set ATHENA_PROC_NUMBER=9
[2025-11-25 22:28:21] Set ATHENA_CORE_NUMBER=9
[2025-11-25 22:28:21] Starting ATLAS job with PandaID=6897488181
[2025-11-25 22:28:21] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/9 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 09:34:30]  *** The last 200 lines of the pilot log: ***
[2025-11-26 09:34:30] 2025-11-26 14:33:45,299 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 09:34:30] 2025-11-26 14:33:47,719 | INFO     | PID=3469774 has CPU usage=3.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-26 09:34:30] 2025-11-26 14:33:47,719 | INFO     | .. there are 96 such processes running
[2025-11-26 09:34:30] 2025-11-26 14:33:47,845 | INFO     | monitor loop #2398: job 0:6897488181 is in state 'finished'
[2025-11-26 09:34:30] 2025-11-26 14:33:47,846 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 09:34:30] 2025-11-26 14:33:48,723 | INFO     | time since job start (39891s) is within the limit (172800.0s)
[2025-11-26 09:34:30] 2025-11-26 14:33:50,351 | INFO     | monitor loop #2399: job 0:6897488181 is in state 'finished'
[2025-11-26 09:34:30] 2025-11-26 14:33:50,351 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 09:34:30] 2025-11-26 14:33:50,732 | INFO     | time since job start (39893s) is within the limit (172800.0s)
[2025-11-26 09:34:30] 2025-11-26 14:33:52,740 | INFO     | time since job start (39895s) is within the limit (172800.0s)
[2025-11-26 09:34:30] 2025-11-26 14:33:52,857 | INFO     | monitor loop #2400: job 0:6897488181 is in state 'finished'
[2025-11-26 09:34:30] 2025-11-26 14:33:52,857 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 09:34:30] 2025-11-26 14:33:54,754 | INFO     | time since job start (39897s) is within the limit (172800.0s)
[2025-11-26 09:34:30] 2025-11-26 14:33:55,364 | INFO     | monitor loop #2401: job 0:6897488181 is in state 'finished'
[2025-11-26 09:34:30] 2025-11-26 14:33:55,364 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 09:34:30] 2025-11-26 14:33:55,947 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-26 09:34:30] 2025-11-26 14:33:55,955 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3791.063296875001
[2025-11-26 09:34:30] 2025-11-26 14:33:55,968 | INFO     | using path: /tmp/boinchome/slots/9/PanDA_Pilot-6897488181/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 09:34:30] 2025-11-26 14:33:55,968 | INFO     | extracted standard info from prmon json
[2025-11-26 09:34:30] 2025-11-26 14:33:55,969 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 09:34:30] 2025-11-26 14:33:55,969 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 09:34:30] 2025-11-26 14:33:55,974 | INFO     | fitting pss+swap vs Time
[2025-11-26 09:34:30] 2025-11-26 14:33:55,975 | INFO     | sum of square deviations: 85942245088.71791
[2025-11-26 09:34:30] 2025-11-26 14:33:55,980 | INFO     | sum of deviations: -136847498856.66179
[2025-11-26 09:34:30] 2025-11-26 14:33:55,980 | INFO     | mean x: 1764147679.4018404
[2025-11-26 09:34:30] 2025-11-26 14:33:55,980 | INFO     | mean y: 2964146.0521472394
[2025-11-26 09:34:30] 2025-11-26 14:33:55,980 | INFO     | intersect: 2812050612.0934944
[2025-11-26 09:34:30] 2025-11-26 14:33:55,981 | INFO     | chi2: 20.594623137492334
[2025-11-26 09:34:30] 2025-11-26 14:33:55,981 | INFO     | sum of square deviations: 83980285309.61986
[2025-11-26 09:34:30] 2025-11-26 14:33:55,986 | INFO     | sum of deviations: 103617471413.88718
[2025-11-26 09:34:30] 2025-11-26 14:33:55,986 | INFO     | mean x: 1764147526.90881
[2025-11-26 09:34:30] 2025-11-26 14:33:55,986 | INFO     | mean y: 2982834.879443586
[2025-11-26 09:34:30] 2025-11-26 14:33:55,987 | INFO     | intersect: -2173676904.5512605
[2025-11-26 09:34:30] 2025-11-26 14:33:55,987 | INFO     | chi2: 16.550340032628654
[2025-11-26 09:34:30] 2025-11-26 14:33:55,987 | INFO     | current chi2=16.550340032628654 (change=19.63756791208817 %)
[2025-11-26 09:34:30] 2025-11-26 14:33:55,987 | INFO     | right removable region: 646
[2025-11-26 09:34:30] 2025-11-26 14:33:55,987 | INFO     | sum of square deviations: 83979966158.43576
[2025-11-26 09:34:30] 2025-11-26 14:33:55,993 | INFO     | sum of deviations: -331693772625.3418
[2025-11-26 09:34:30] 2025-11-26 14:33:55,993 | INFO     | mean x: 1764147831.9072642
[2025-11-26 09:34:30] 2025-11-26 14:33:55,993 | INFO     | mean y: 2979263.7109737247
[2025-11-26 09:34:30] 2025-11-26 14:33:55,993 | INFO     | intersect: 6970794048.610825
[2025-11-26 09:34:30] 2025-11-26 14:33:55,993 | INFO     | chi2: 18.266548443999337
[2025-11-26 09:34:30] 2025-11-26 14:33:55,993 | INFO     | current chi2=18.266548443999337 (change=11.304284025740472 %)
[2025-11-26 09:34:30] 2025-11-26 14:33:55,993 | INFO     | left removable region: 10
[2025-11-26 09:34:30] 2025-11-26 14:33:55,994 | INFO     | sum of square deviations: 79769054654.58339
[2025-11-26 09:34:30] 2025-11-26 14:33:55,999 | INFO     | sum of deviations: -82297034646.9998
[2025-11-26 09:34:30] 2025-11-26 14:33:55,999 | INFO     | mean x: 1764147801.4166667
[2025-11-26 09:34:30] 2025-11-26 14:33:55,999 | INFO     | mean y: 3005867.3396226414
[2025-11-26 09:34:30] 2025-11-26 14:33:55,999 | INFO     | intersect: 1823061694.3052733
[2025-11-26 09:34:30] 2025-11-26 14:33:55,999 | INFO     | chi2: 13.183908970952167
[2025-11-26 09:34:30] 2025-11-26 14:33:55,999 | INFO     | current memory leak: -1.03 B/s (using 636 data points, chi2=13.18)
[2025-11-26 09:34:30] 2025-11-26 14:33:56,000 | INFO     | could have reported an average CPU frequency of 3799 MHz (25 samples)
[2025-11-26 09:34:30] 2025-11-26 14:33:56,000 | INFO     | ..............................
[2025-11-26 09:34:30] 2025-11-26 14:33:56,000 | INFO     | . Timing measurements:
[2025-11-26 09:34:30] 2025-11-26 14:33:56,000 | INFO     | . get job = 0 s
[2025-11-26 09:34:30] 2025-11-26 14:33:56,000 | INFO     | . initial setup = 2 s
[2025-11-26 09:34:30] 2025-11-26 14:33:56,000 | INFO     | . payload setup = 23 s
[2025-11-26 09:34:30] 2025-11-26 14:33:56,000 | INFO     | . stage-in = 0 s
[2025-11-26 09:34:30] 2025-11-26 14:33:56,000 | INFO     | . payload execution = 39781 s
[2025-11-26 09:34:30] 2025-11-26 14:33:56,000 | INFO     | . stage-out = 8 s
[2025-11-26 09:34:30] 2025-11-26 14:33:56,000 | INFO     | . log creation = 2 s
[2025-11-26 09:34:30] 2025-11-26 14:33:56,000 | INFO     | ..............................
[2025-11-26 09:34:30] 2025-11-26 14:33:56,049 | INFO     | 
[2025-11-26 09:34:30] 2025-11-26 14:33:56,049 | INFO     | job summary report
[2025-11-26 09:34:30] 2025-11-26 14:33:56,050 | INFO     | --------------------------------------------------
[2025-11-26 09:34:30] 2025-11-26 14:33:56,050 | INFO     | PanDA job id: 6897488181
[2025-11-26 09:34:30] 2025-11-26 14:33:56,050 | INFO     | task id: 47556161
[2025-11-26 09:34:30] 2025-11-26 14:33:56,050 | INFO     | errors: (none)
[2025-11-26 09:34:30] 2025-11-26 14:33:56,050 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 09:34:30] 2025-11-26 14:33:56,050 | INFO     | pilot state: finished 
[2025-11-26 09:34:30] 2025-11-26 14:33:56,050 | INFO     | transexitcode: 0
[2025-11-26 09:34:30] 2025-11-26 14:33:56,050 | INFO     | exeerrorcode: 0
[2025-11-26 09:34:30] 2025-11-26 14:33:56,050 | INFO     | exeerrordiag: 
[2025-11-26 09:34:30] 2025-11-26 14:33:56,050 | INFO     | exitcode: 0
[2025-11-26 09:34:30] 2025-11-26 14:33:56,050 | INFO     | exitmsg: OK
[2025-11-26 09:34:30] 2025-11-26 14:33:56,050 | INFO     | cpuconsumptiontime: 139841 s
[2025-11-26 09:34:30] 2025-11-26 14:33:56,050 | INFO     | nevents: 1000
[2025-11-26 09:34:30] 2025-11-26 14:33:56,050 | INFO     | neventsw: 0
[2025-11-26 09:34:30] 2025-11-26 14:33:56,050 | INFO     | pid: 3505011
[2025-11-26 09:34:30] 2025-11-26 14:33:56,050 | INFO     | pgrp: 3505011
[2025-11-26 09:34:30] 2025-11-26 14:33:56,050 | INFO     | corecount: 9
[2025-11-26 09:34:30] 2025-11-26 14:33:56,050 | INFO     | event service: False
[2025-11-26 09:34:30] 2025-11-26 14:33:56,050 | INFO     | sizes: {0: 2284265, 11: 2284265, 18: 2284555, 22: 2284583, 39809: 2327814, 39810: 2327813, 39820: 2336991, 39821: 2337047, 39856: 2337357}
[2025-11-26 09:34:30] 2025-11-26 14:33:56,050 | INFO     | --------------------------------------------------
[2025-11-26 09:34:30] 2025-11-26 14:33:56,050 | INFO     | 
[2025-11-26 09:34:30] 2025-11-26 14:33:56,050 | INFO     | executing command: ls -lF /tmp/boinchome/slots/9
[2025-11-26 09:34:30] 2025-11-26 14:33:56,160 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 09:34:30] 2025-11-26 14:33:56,160 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 09:34:30] 2025-11-26 14:33:56,160 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 09:34:30] 2025-11-26 14:33:56,160 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 09:34:30] 2025-11-26 14:33:56,160 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 09:34:30] 2025-11-26 14:33:56,160 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 09:34:30] 2025-11-26 14:33:56,160 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 09:34:30] 2025-11-26 14:33:56,160 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 09:34:30] 2025-11-26 14:33:56,160 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 09:34:30] 2025-11-26 14:33:56,160 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 09:34:30] 2025-11-26 14:33:56,160 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 09:34:30] 2025-11-26 14:33:56,160 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 09:34:30] 2025-11-26 14:33:56,160 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 09:34:30] 2025-11-26 14:33:56,160 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 09:34:30] 2025-11-26 14:33:56,160 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 09:34:30] 2025-11-26 14:33:56,160 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 09:34:30] 2025-11-26 14:33:56,160 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 09:34:30] 2025-11-26 14:33:56,161 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 09:34:30] 2025-11-26 14:33:56,161 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 09:34:30] 2025-11-26 14:33:56,161 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 09:34:30] 2025-11-26 14:33:56,161 | INFO     | job 6897488181 has completed (purged errors)
[2025-11-26 09:34:30] 2025-11-26 14:33:56,161 | INFO     | overall cleanup function is called
[2025-11-26 09:34:30] 2025-11-26 14:33:57,184 | INFO     | --- collectZombieJob: --- 10, [3505011]
[2025-11-26 09:34:30] 2025-11-26 14:33:57,184 | INFO     | zombie collector waiting for pid 3505011
[2025-11-26 09:34:30] 2025-11-26 14:33:57,184 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 09:34:30] 2025-11-26 14:33:57,185 | INFO     | collected zombie processes
[2025-11-26 09:34:30] 2025-11-26 14:33:57,185 | INFO     | will attempt to kill all subprocesses of pid=3505011
[2025-11-26 09:34:30] 2025-11-26 14:33:58,826 | INFO     | process IDs to be killed: [3505011] (in reverse order)
[2025-11-26 09:34:30] 2025-11-26 14:33:59,523 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 09:34:30] 2025-11-26 14:33:59,523 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 09:34:30] 2025-11-26 14:33:59,576 | INFO     | did not find any defunct processes belonging to 3505011
[2025-11-26 09:34:30] 2025-11-26 14:33:59,634 | INFO     | did not find any defunct processes belonging to 3505011
[2025-11-26 09:34:30] 2025-11-26 14:33:59,635 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 09:34:30] 2025-11-26 14:33:59,635 | INFO     | ready for new job
[2025-11-26 09:34:30] 2025-11-26 14:33:59,635 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 09:34:30] 2025-11-26 14:33:59,638 | INFO     | ***************************************
[2025-11-26 09:34:30] 2025-11-26 14:33:59,638 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 09:34:30] 2025-11-26 14:33:59,638 | INFO     | ***************************************
[2025-11-26 09:34:30] 2025-11-26 14:33:59,638 | INFO     | 
[2025-11-26 09:34:30] 2025-11-26 14:33:59,650 | INFO     | architecture information:
[2025-11-26 09:34:30] 2025-11-26 14:33:59,651 | INFO     | executing command: cat /etc/os-release
[2025-11-26 09:34:30] 2025-11-26 14:33:59,692 | INFO     | cat /etc/os-release:
[2025-11-26 09:34:30] NAME="CentOS Linux"
[2025-11-26 09:34:30] VERSION="7 (Core)"
[2025-11-26 09:34:30] ID="centos"
[2025-11-26 09:34:30] ID_LIKE="rhel fedora"
[2025-11-26 09:34:30] VERSION_ID="7"
[2025-11-26 09:34:30] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 09:34:30] ANSI_COLOR="0;31"
[2025-11-26 09:34:30] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 09:34:30] HOME_URL="https://www.centos.org/"
[2025-11-26 09:34:30] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 09:34:30] 
[2025-11-26 09:34:30] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 09:34:30] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 09:34:30] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 09:34:30] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 09:34:30] 
[2025-11-26 09:34:30] 2025-11-26 14:33:59,692 | INFO     | ***************************************
[2025-11-26 09:34:30] 2025-11-26 14:34:00,205 | INFO     | executing command: df -mP /tmp/boinchome/slots/9
[2025-11-26 09:34:30] 2025-11-26 14:34:00,262 | INFO     | sufficient remaining disk space (62424875008 B)
[2025-11-26 09:34:30] 2025-11-26 14:34:00,262 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 09:34:30] 2025-11-26 14:34:00,262 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 09:34:30] 2025-11-26 14:34:00,262 | INFO     | update_server=False
[2025-11-26 09:34:30] 2025-11-26 14:34:00,262 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 09:34:30] 2025-11-26 14:34:00,400 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-26 09:34:30] 2025-11-26 14:34:00,400 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-26 09:34:30] 2025-11-26 14:34:00,400 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 09:34:30] 2025-11-26 14:34:00,400 | INFO     | will abort loop
[2025-11-26 09:34:30] 2025-11-26 14:34:00,496 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 09:34:30] 2025-11-26 14:34:00,817 | INFO     | all data control threads have been joined
[2025-11-26 09:34:30] 2025-11-26 14:34:01,092 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 09:34:30] 2025-11-26 14:34:01,270 | INFO     | [job] retrieve thread has finished
[2025-11-26 09:34:30] 2025-11-26 14:34:01,310 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 09:34:30] 2025-11-26 14:34:01,340 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 09:34:30] 2025-11-26 14:34:01,406 | INFO     | [job] job monitor thread has finished
[2025-11-26 09:34:30] 2025-11-26 14:34:01,469 | INFO     | all job control threads have been joined
[2025-11-26 09:34:30] 2025-11-26 14:34:01,735 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 09:34:30] 2025-11-26 14:34:01,738 | INFO     | [job] validate thread has finished
[2025-11-26 09:34:30] 2025-11-26 14:34:01,812 | INFO     | all payload control threads have been joined
[2025-11-26 09:34:30] 2025-11-26 14:34:01,823 | INFO     | [data] control thread has finished
[2025-11-26 09:34:30] 2025-11-26 14:34:01,911 | INFO     | [payload] failed_post thread has finished
[2025-11-26 09:34:30] 2025-11-26 14:34:01,912 | INFO     | [data] copytool_in thread has finished
[2025-11-26 09:34:30] 2025-11-26 14:34:02,098 | INFO     | [job] queue monitor thread has finished
[2025-11-26 09:34:30] 2025-11-26 14:34:02,476 | INFO     | [job] control thread has finished
[2025-11-26 09:34:30] 2025-11-26 14:34:02,505 | INFO     | [data] copytool_out thread has finished
[2025-11-26 09:34:30] 2025-11-26 14:34:02,662 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 09:34:30] 2025-11-26 14:34:02,820 | INFO     | [payload] control thread has finished
[2025-11-26 09:34:30] 2025-11-26 14:34:02,867 | INFO     | [payload] validate_post thread has finished
[2025-11-26 09:34:30] 2025-11-26 14:34:03,564 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 09:34:30] 2025-11-26 14:34:07,232 | INFO     | [monitor] cgroup control has ended
[2025-11-26 09:34:30] 2025-11-26 14:34:07,582 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 09:34:30] 2025-11-26 14:34:09,408 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140445500335936)>', '<ExcThread(monitor, started 140444985960192)>']
[2025-11-26 09:34:30] 2025-11-26 14:34:14,435 | INFO     | all workflow threads have been joined
[2025-11-26 09:34:30] 2025-11-26 14:34:14,435 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 09:34:30] 2025-11-26 14:34:14,435 | INFO     | traces error code: 0
[2025-11-26 09:34:30] 2025-11-26 14:34:14,435 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 09:34:30] 2025-11-26 14:34:29,152 | INFO     | PID=3469774 has CPU usage=3.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-26 09:34:30] 2025-11-26 14:34:29,153 | INFO     | .. there are 96 such processes running
[2025-11-26 09:34:30] 2025-11-26 14:34:29,153 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 09:34:30] 2025-11-26 14:34:29,153 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 09:34:30] 2025-11-26 14:34:29,153 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 09:34:30] 2025-11-26 14:34:29,153 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 09:34:30] 2025-11-26 14:34:29,153 | INFO     | [monitor] control thread has ended
[2025-11-26 09:34:30] 2025-11-26 14:34:29,462 [wrapper] ==== pilot stdout END ====
[2025-11-26 09:34:30] 2025-11-26 14:34:29,487 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 09:34:30] 2025-11-26 14:34:29,529 [wrapper] pilotpid: 3469774
[2025-11-26 09:34:30] 2025-11-26 14:34:29,584 [wrapper] Pilot exit status: 0
[2025-11-26 09:34:30] 2025-11-26 14:34:29,670 [wrapper] pandaids: 6897488181
[2025-11-26 09:34:30] 2025-11-26 14:34:30,251 [wrapper] cleanup supervisor_pilot 1366659 3469775
[2025-11-26 09:34:30] 2025-11-26 14:34:30,268 [wrapper] Test setup, not cleaning
[2025-11-26 09:34:30] 2025-11-26 14:34:30,275 [wrapper] apfmon messages muted
[2025-11-26 09:34:30] 2025-11-26 14:34:30,278 [wrapper] ==== wrapper stdout END ====
[2025-11-26 09:34:30] 2025-11-26 14:34:30,300 [wrapper] ==== wrapper stderr END ====
[2025-11-26 09:34:30]  *** Error codes and diagnostics ***
[2025-11-26 09:34:30]     "exeErrorCode": 0,
[2025-11-26 09:34:30]     "exeErrorDiag": "",
[2025-11-26 09:34:30]     "pilotErrorCode": 0,
[2025-11-26 09:34:30]     "pilotErrorDiag": "",
[2025-11-26 09:34:30]  *** Listing of results directory ***
[2025-11-26 09:34:30] total 1329836
[2025-11-26 09:34:30] -rw-r--r--. 1 boincer umatlas    576529 Nov 25 11:48 pilot3.tar.gz
[2025-11-26 09:34:30] -rw-r--r--. 1 boincer umatlas      5112 Nov 25 11:55 queuedata.json
[2025-11-26 09:34:30] -rwx------. 1 boincer umatlas     36292 Nov 25 11:57 runpilot2-wrapper.sh
[2025-11-26 09:34:30] -rw-r--r--. 1 boincer umatlas       100 Nov 25 22:28 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 09:34:30] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 25 22:28 run_atlas
[2025-11-26 09:34:30] -rw-r--r--. 1 boincer umatlas       105 Nov 25 22:28 job.xml
[2025-11-26 09:34:30] -rw-r--r--. 2 boincer umatlas 410633838 Nov 25 22:28 EVNT.47483658._002261.pool.root.1
[2025-11-26 09:34:30] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 22:28 start_atlas.sh
[2025-11-26 09:34:30] drwxrwx--x. 2 boincer umatlas      4096 Nov 25 22:28 shared
[2025-11-26 09:34:30] -rw-r--r--. 2 boincer umatlas    590105 Nov 25 22:28 input.tar.gz
[2025-11-26 09:34:30] -rw-r--r--. 1 boincer umatlas         0 Nov 25 22:28 boinc_lockfile
[2025-11-26 09:34:30] -rw-r--r--. 1 boincer umatlas      2786 Nov 25 22:28 pandaJob.out
[2025-11-26 09:34:30] -rw-------. 1 boincer umatlas        57 Nov 25 22:28 setup.sh.local
[2025-11-26 09:34:30] -rw-------. 1 boincer umatlas    991877 Nov 25 22:28 agis_schedconf.cvmfs.json
[2025-11-26 09:34:30] drwx------. 5 boincer umatlas      4096 Nov 25 22:28 pilot3
[2025-11-26 09:34:30] -rw-r--r--. 1 boincer umatlas       532 Nov 26 09:07 boinc_task_state.xml
[2025-11-26 09:34:30] -rw-r--r--. 1 boincer umatlas      7171 Nov 26 09:27 init_data.xml
[2025-11-26 09:34:30] -rw-------. 1 boincer umatlas 933148278 Nov 26 09:32 HITS.47556161._002442.pool.root.1
[2025-11-26 09:34:30] -rw-------. 1 boincer umatlas      1053 Nov 26 09:33 memory_monitor_summary.json
[2025-11-26 09:34:30] -rw-------. 1 boincer umatlas   1516240 Nov 26 09:33 agis_ddmendpoints.agis.ALL.json
[2025-11-26 09:34:30] -rw-------. 1 boincer umatlas   1962445 Nov 26 09:33 log.47556161._002442.job.log.tgz.1
[2025-11-26 09:34:30] -rw-------. 1 boincer umatlas      8581 Nov 26 09:33 heartbeat.json
[2025-11-26 09:34:30] -rw-------. 1 boincer umatlas        95 Nov 26 09:34 pilot_heartbeat.json
[2025-11-26 09:34:30] -rw-------. 1 boincer umatlas       823 Nov 26 09:34 pilotlog.txt
[2025-11-26 09:34:30] -rw-r--r--. 1 boincer umatlas      8192 Nov 26 09:34 boinc_mmap_file
[2025-11-26 09:34:30] -rw-------. 1 boincer umatlas   5059468 Nov 26 09:34 log.47556161._002442.job.log.1
[2025-11-26 09:34:30] -rw-------. 1 boincer umatlas       353 Nov 26 09:34 output.list
[2025-11-26 09:34:30] -rw-r--r--. 1 boincer umatlas       620 Nov 26 09:34 runtime_log
[2025-11-26 09:34:30] -rw-r--r--. 1 boincer umatlas        29 Nov 26 09:34 wrapper_checkpoint.txt
[2025-11-26 09:34:30] -rw-------. 1 boincer umatlas   7045120 Nov 26 09:34 result.tar.gz
[2025-11-26 09:34:30] -rw-------. 1 boincer umatlas       659 Nov 26 09:34 SkBMDmMXBi8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmOXMKDmBrhJnn.diag
[2025-11-26 09:34:30] -rw-r--r--. 1 boincer umatlas      9338 Nov 26 09:34 runtime_log.err
[2025-11-26 09:34:30] -rw-r--r--. 1 boincer umatlas     21863 Nov 26 09:34 stderr.txt
[2025-11-26 09:34:31] HITS file was successfully produced:
[2025-11-26 09:34:31] -rw-------. 1 boincer umatlas 933148278 Nov 26 09:32 shared/HITS.pool.root.1
[2025-11-26 09:34:31]  *** Contents of shared directory: ***
[2025-11-26 09:34:31] total 1319776
[2025-11-26 09:34:31] -rw-r--r--. 2 boincer umatlas 410633838 Nov 25 22:28 ATLAS.root_0
[2025-11-26 09:34:31] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 22:28 start_atlas.sh
[2025-11-26 09:34:31] -rw-r--r--. 2 boincer umatlas    590105 Nov 25 22:28 input.tar.gz
[2025-11-26 09:34:31] -rw-------. 1 boincer umatlas 933148278 Nov 26 09:32 HITS.pool.root.1
[2025-11-26 09:34:31] -rw-------. 1 boincer umatlas   7045120 Nov 26 09:34 result.tar.gz
09:34:32 (3456854): run_atlas exited; CPU time 140599.629345
09:34:32 (3456854): called boinc_finish(0)

</stderr_txt>
]]>

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