Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
14:23:35 (546215): wrapper (7.7.26015): starting
14:23:35 (546215): wrapper: running run_atlas (--nthreads 4)
[2025-11-29 14:23:35] Arguments: --nthreads 4
[2025-11-29 14:23:35] Threads: 4
[2025-11-29 14:23:35] Checking for CVMFS
[2025-11-29 14:23:35] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-29 14:23:35] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-29 14:23:35] Running cvmfs_config stat atlas.cern.ch
[2025-11-29 14:23:35] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-29 14:23:35] 2.9.2.0 2420625 15515 108444 153444 3 81 33481376 36864001 0 130560 1 6122002 99.950 724614 889 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-29 14:23:35] CVMFS is ok
[2025-11-29 14:23:35] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-29 14:23:35] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-29 14:23:35] Further information can be found at the LHC@home message board.
[2025-11-29 14:23:35] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-29 14:23:35] Checking for apptainer binary...
[2025-11-29 14:23:35] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-29 14:23:35] Running /usr/bin/apptainer --version
[2025-11-29 14:23:35] apptainer version 1.4.1-1.1
[2025-11-29 14:23:35] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-29 14:23:35] thA350a
[2025-11-29 14:23:35] apptainer works
[2025-11-29 14:23:35] Set ATHENA_PROC_NUMBER=4
[2025-11-29 14:23:35] Set ATHENA_CORE_NUMBER=4
[2025-11-29 14:23:35] Starting ATLAS job with PandaID=6895883540
[2025-11-29 14:23:35] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-29 21:24:33]  *** The last 200 lines of the pilot log: ***
[2025-11-29 21:24:33] 2025-11-29 20:24:00,277 | INFO     | time since job start (25217s) is within the limit (172800.0s)
[2025-11-29 21:24:33] 2025-11-29 20:24:00,526 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-29 21:24:33] 2025-11-29 20:24:00,528 | INFO     | found 8 cores (8 cores per socket, 1 socket) HT, CPU MHz: 3266.089499999999
[2025-11-29 21:24:33] 2025-11-29 20:24:00,529 | INFO     | using path: /local/data/boinc/slots/0/PanDA_Pilot-6895883540/memory_monitor_summary.json (trf name=prmon)
[2025-11-29 21:24:33] 2025-11-29 20:24:00,530 | INFO     | extracted standard info from prmon json
[2025-11-29 21:24:33] 2025-11-29 20:24:00,530 | INFO     | extracted standard memory fields from prmon json
[2025-11-29 21:24:33] 2025-11-29 20:24:00,530 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-29 21:24:33] 2025-11-29 20:24:00,533 | INFO     | fitting pss+swap vs Time
[2025-11-29 21:24:33] 2025-11-29 20:24:00,533 | INFO     | sum of square deviations: 21843691422.0
[2025-11-29 21:24:33] 2025-11-29 20:24:00,534 | INFO     | sum of deviations: 190421621058.99997
[2025-11-29 21:24:33] 2025-11-29 20:24:00,534 | INFO     | mean x: 1764435213.0
[2025-11-29 21:24:33] 2025-11-29 20:24:00,535 | INFO     | mean y: 2369734.5084745763
[2025-11-29 21:24:33] 2025-11-29 20:24:00,535 | INFO     | intersect: -15379032933.295696
[2025-11-29 21:24:33] 2025-11-29 20:24:00,535 | INFO     | chi2: 4.589185798721886
[2025-11-29 21:24:33] 2025-11-29 20:24:00,535 | INFO     | sum of square deviations: 21059899982.0
[2025-11-29 21:24:33] 2025-11-29 20:24:00,536 | INFO     | sum of deviations: 259820947586.50003
[2025-11-29 21:24:33] 2025-11-29 20:24:00,537 | INFO     | mean x: 1764435060.5
[2025-11-29 21:24:33] 2025-11-29 20:24:00,537 | INFO     | mean y: 2383185.31127451
[2025-11-29 21:24:33] 2025-11-29 20:24:00,537 | INFO     | intersect: -21765867839.89692
[2025-11-29 21:24:33] 2025-11-29 20:24:00,537 | INFO     | chi2: 2.805262338989731
[2025-11-29 21:24:33] 2025-11-29 20:24:00,537 | INFO     | current chi2=2.805262338989731 (change=38.87233025581548 %)
[2025-11-29 21:24:33] 2025-11-29 20:24:00,537 | INFO     | sum of square deviations: 20295085642.0
[2025-11-29 21:24:33] 2025-11-29 20:24:00,539 | INFO     | sum of deviations: 254821097866.99997
[2025-11-29 21:24:33] 2025-11-29 20:24:00,539 | INFO     | mean x: 1764434908.0
[2025-11-29 21:24:33] 2025-11-29 20:24:00,539 | INFO     | mean y: 2382187.6079404466
[2025-11-29 21:24:33] 2025-11-29 20:24:00,539 | INFO     | intersect: -22151514982.50084
[2025-11-29 21:24:33] 2025-11-29 20:24:00,539 | INFO     | chi2: 2.8040705694110244
[2025-11-29 21:24:33] 2025-11-29 20:24:00,539 | INFO     | current chi2=2.8040705694110244 (change=0.04248335573262916 %)
[2025-11-29 21:24:33] 2025-11-29 20:24:00,539 | INFO     | right removable region: 402
[2025-11-29 21:24:33] 2025-11-29 20:24:00,539 | INFO     | sum of square deviations: 21059899982.0
[2025-11-29 21:24:33] 2025-11-29 20:24:00,541 | INFO     | sum of deviations: 91763648130.49983
[2025-11-29 21:24:33] 2025-11-29 20:24:00,541 | INFO     | mean x: 1764435365.5
[2025-11-29 21:24:33] 2025-11-29 20:24:00,541 | INFO     | mean y: 2388902.3210784313
[2025-11-29 21:24:33] 2025-11-29 20:24:00,541 | INFO     | intersect: -7685730517.388322
[2025-11-29 21:24:33] 2025-11-29 20:24:00,541 | INFO     | chi2: 2.285492652718165
[2025-11-29 21:24:33] 2025-11-29 20:24:00,541 | INFO     | current chi2=2.285492652718165 (change=50.198297629294345 %)
[2025-11-29 21:24:33] 2025-11-29 20:24:00,541 | INFO     | sum of square deviations: 20295085642.0
[2025-11-29 21:24:33] 2025-11-29 20:24:00,543 | INFO     | sum of deviations: 54986502452.99999
[2025-11-29 21:24:33] 2025-11-29 20:24:00,543 | INFO     | mean x: 1764435518.0
[2025-11-29 21:24:33] 2025-11-29 20:24:00,543 | INFO     | mean y: 2396200.888337469
[2025-11-29 21:24:33] 2025-11-29 20:24:00,543 | INFO     | intersect: -4778078227.753018
[2025-11-29 21:24:33] 2025-11-29 20:24:00,543 | INFO     | chi2: 1.8531511855593592
[2025-11-29 21:24:33] 2025-11-29 20:24:00,543 | INFO     | current chi2=1.8531511855593592 (change=18.91677344246181 %)
[2025-11-29 21:24:33] 2025-11-29 20:24:00,543 | INFO     | left removable region: 20
[2025-11-29 21:24:33] 2025-11-29 20:24:00,543 | INFO     | sum of square deviations: 17284846875.5
[2025-11-29 21:24:33] 2025-11-29 20:24:00,544 | INFO     | sum of deviations: 102061553237.0
[2025-11-29 21:24:33] 2025-11-29 20:24:00,545 | INFO     | mean x: 1764435487.5
[2025-11-29 21:24:33] 2025-11-29 20:24:00,545 | INFO     | mean y: 2413463.204188482
[2025-11-29 21:24:33] 2025-11-29 20:24:00,545 | INFO     | intersect: -10416019962.20179
[2025-11-29 21:24:33] 2025-11-29 20:24:00,545 | INFO     | chi2: 0.029562597939516343
[2025-11-29 21:24:33] 2025-11-29 20:24:00,545 | INFO     | current memory leak: 5.90 B/s (using 382 data points, chi2=0.03)
[2025-11-29 21:24:33] 2025-11-29 20:24:00,545 | INFO     | could have reported an average CPU frequency of 3739 MHz (17 samples)
[2025-11-29 21:24:33] 2025-11-29 20:24:00,545 | INFO     | ..............................
[2025-11-29 21:24:33] 2025-11-29 20:24:00,545 | INFO     | . Timing measurements:
[2025-11-29 21:24:33] 2025-11-29 20:24:00,545 | INFO     | . get job = 0 s
[2025-11-29 21:24:33] 2025-11-29 20:24:00,545 | INFO     | . initial setup = 1 s
[2025-11-29 21:24:33] 2025-11-29 20:24:00,545 | INFO     | . payload setup = 4 s
[2025-11-29 21:24:33] 2025-11-29 20:24:00,545 | INFO     | . stage-in = 0 s
[2025-11-29 21:24:33] 2025-11-29 20:24:00,545 | INFO     | . payload execution = 25184 s
[2025-11-29 21:24:33] 2025-11-29 20:24:00,545 | INFO     | . stage-out = 1 s
[2025-11-29 21:24:33] 2025-11-29 20:24:00,545 | INFO     | . log creation = 0 s
[2025-11-29 21:24:33] 2025-11-29 20:24:00,545 | INFO     | ..............................
[2025-11-29 21:24:33] 2025-11-29 20:24:00,829 | INFO     | 
[2025-11-29 21:24:33] 2025-11-29 20:24:00,829 | INFO     | job summary report
[2025-11-29 21:24:33] 2025-11-29 20:24:00,829 | INFO     | --------------------------------------------------
[2025-11-29 21:24:33] 2025-11-29 20:24:00,829 | INFO     | PanDA job id: 6895883540
[2025-11-29 21:24:33] 2025-11-29 20:24:00,829 | INFO     | task id: 47556149
[2025-11-29 21:24:33] 2025-11-29 20:24:00,829 | INFO     | errors: (none)
[2025-11-29 21:24:33] 2025-11-29 20:24:00,829 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-29 21:24:33] 2025-11-29 20:24:00,829 | INFO     | pilot state: finished 
[2025-11-29 21:24:33] 2025-11-29 20:24:00,829 | INFO     | transexitcode: 0
[2025-11-29 21:24:33] 2025-11-29 20:24:00,829 | INFO     | exeerrorcode: 0
[2025-11-29 21:24:33] 2025-11-29 20:24:00,829 | INFO     | exeerrordiag: 
[2025-11-29 21:24:33] 2025-11-29 20:24:00,829 | INFO     | exitcode: 0
[2025-11-29 21:24:33] 2025-11-29 20:24:00,829 | INFO     | exitmsg: OK
[2025-11-29 21:24:33] 2025-11-29 20:24:00,829 | INFO     | cpuconsumptiontime: 98790 s
[2025-11-29 21:24:33] 2025-11-29 20:24:00,829 | INFO     | nevents: 1000
[2025-11-29 21:24:33] 2025-11-29 20:24:00,829 | INFO     | neventsw: 0
[2025-11-29 21:24:33] 2025-11-29 20:24:00,829 | INFO     | pid: 556626
[2025-11-29 21:24:33] 2025-11-29 20:24:00,830 | INFO     | pgrp: 556626
[2025-11-29 21:24:33] 2025-11-29 20:24:00,830 | INFO     | corecount: 4
[2025-11-29 21:24:33] 2025-11-29 20:24:00,830 | INFO     | event service: False
[2025-11-29 21:24:33] 2025-11-29 20:24:00,830 | INFO     | sizes: {0: 2283487, 1: 2284346, 4: 2284608, 11: 2284636, 25193: 2321689, 25194: 2330689, 25196: 2330873, 25202: 2331183}
[2025-11-29 21:24:33] 2025-11-29 20:24:00,830 | INFO     | --------------------------------------------------
[2025-11-29 21:24:33] 2025-11-29 20:24:00,830 | INFO     | 
[2025-11-29 21:24:33] 2025-11-29 20:24:00,830 | INFO     | executing command: ls -lF /local/data/boinc/slots/0
[2025-11-29 21:24:33] 2025-11-29 20:24:00,851 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-29 21:24:33] 2025-11-29 20:24:00,852 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-29 21:24:33] 2025-11-29 20:24:00,852 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-29 21:24:33] 2025-11-29 20:24:00,852 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-29 21:24:33] 2025-11-29 20:24:00,852 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-29 21:24:33] 2025-11-29 20:24:00,852 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-29 21:24:33] 2025-11-29 20:24:00,852 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-29 21:24:33] 2025-11-29 20:24:00,852 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-29 21:24:33] 2025-11-29 20:24:00,852 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-29 21:24:33] 2025-11-29 20:24:00,852 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-29 21:24:33] 2025-11-29 20:24:00,852 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-29 21:24:33] 2025-11-29 20:24:00,852 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-29 21:24:33] 2025-11-29 20:24:00,852 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-29 21:24:33] 2025-11-29 20:24:00,852 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-29 21:24:33] 2025-11-29 20:24:00,852 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-29 21:24:33] 2025-11-29 20:24:00,852 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-29 21:24:33] 2025-11-29 20:24:00,852 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-29 21:24:33] 2025-11-29 20:24:00,852 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-29 21:24:33] 2025-11-29 20:24:00,852 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-29 21:24:33] 2025-11-29 20:24:00,852 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-29 21:24:33] 2025-11-29 20:24:00,852 | INFO     | job 6895883540 has completed (purged errors)
[2025-11-29 21:24:33] 2025-11-29 20:24:00,853 | INFO     | overall cleanup function is called
[2025-11-29 21:24:33] 2025-11-29 20:24:01,360 | INFO     | PID=550021 has CPU usage=5.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-29 21:24:33] 2025-11-29 20:24:01,862 | INFO     | --- collectZombieJob: --- 10, [556626]
[2025-11-29 21:24:33] 2025-11-29 20:24:01,863 | INFO     | zombie collector waiting for pid 556626
[2025-11-29 21:24:33] 2025-11-29 20:24:01,863 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-29 21:24:33] 2025-11-29 20:24:01,863 | INFO     | collected zombie processes
[2025-11-29 21:24:33] 2025-11-29 20:24:01,863 | INFO     | will attempt to kill all subprocesses of pid=556626
[2025-11-29 21:24:33] 2025-11-29 20:24:01,920 | INFO     | process IDs to be killed: [556626] (in reverse order)
[2025-11-29 21:24:33] 2025-11-29 20:24:01,958 | WARNING  | found no corresponding commands to process id(s)
[2025-11-29 21:24:33] 2025-11-29 20:24:01,958 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-29 21:24:33] 2025-11-29 20:24:01,960 | INFO     | did not find any defunct processes belonging to 556626
[2025-11-29 21:24:33] 2025-11-29 20:24:01,962 | INFO     | did not find any defunct processes belonging to 556626
[2025-11-29 21:24:33] 2025-11-29 20:24:01,963 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-29 21:24:33] 2025-11-29 20:24:01,963 | INFO     | ready for new job
[2025-11-29 21:24:33] 2025-11-29 20:24:01,963 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-29 21:24:33] 2025-11-29 20:24:01,965 | INFO     | ***************************************
[2025-11-29 21:24:33] 2025-11-29 20:24:01,965 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-29 21:24:33] 2025-11-29 20:24:01,965 | INFO     | ***************************************
[2025-11-29 21:24:33] 2025-11-29 20:24:01,965 | INFO     | 
[2025-11-29 21:24:33] 2025-11-29 20:24:01,965 | INFO     | architecture information:
[2025-11-29 21:24:33] 2025-11-29 20:24:01,966 | INFO     | executing command: cat /etc/os-release
[2025-11-29 21:24:33] 2025-11-29 20:24:01,980 | INFO     | cat /etc/os-release:
[2025-11-29 21:24:33] NAME="CentOS Linux"
[2025-11-29 21:24:33] VERSION="7 (Core)"
[2025-11-29 21:24:33] ID="centos"
[2025-11-29 21:24:33] ID_LIKE="rhel fedora"
[2025-11-29 21:24:33] VERSION_ID="7"
[2025-11-29 21:24:33] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-29 21:24:33] ANSI_COLOR="0;31"
[2025-11-29 21:24:33] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-29 21:24:33] HOME_URL="https://www.centos.org/"
[2025-11-29 21:24:33] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-29 21:24:33] 
[2025-11-29 21:24:33] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-29 21:24:33] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-29 21:24:33] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-29 21:24:33] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-29 21:24:33] 
[2025-11-29 21:24:33] 2025-11-29 20:24:01,981 | INFO     | ***************************************
[2025-11-29 21:24:33] 2025-11-29 20:24:02,484 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-11-29 21:24:33] 2025-11-29 20:24:02,502 | INFO     | sufficient remaining disk space (221201301504 B)
[2025-11-29 21:24:33] 2025-11-29 20:24:02,502 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-29 21:24:33] 2025-11-29 20:24:02,502 | INFO     | current server update state: UPDATING_FINAL
[2025-11-29 21:24:33] 2025-11-29 20:24:02,502 | INFO     | update_server=False
[2025-11-29 21:24:33] 2025-11-29 20:24:02,502 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-29 21:24:33] 2025-11-29 20:24:02,502 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-29 21:24:33] 2025-11-29 20:24:02,502 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-29 21:24:33] 2025-11-29 20:24:02,503 | INFO     | aborting loop
[2025-11-29 21:24:33] 2025-11-29 20:24:02,607 | INFO     | all data control threads have been joined
[2025-11-29 21:24:33] 2025-11-29 20:24:02,643 | INFO     | all payload control threads have been joined
[2025-11-29 21:24:33] 2025-11-29 20:24:02,774 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-29 21:24:33] 2025-11-29 20:24:03,153 | INFO     | all job control threads have been joined
[2025-11-29 21:24:33] 2025-11-29 20:24:03,508 | INFO     | [job] retrieve thread has finished
[2025-11-29 21:24:33] 2025-11-29 20:24:03,508 | INFO     | [job] queue monitor thread has finished
[2025-11-29 21:24:33] 2025-11-29 20:24:03,508 | INFO     | [job] job monitor thread has finished
[2025-11-29 21:24:33] 2025-11-29 20:24:03,555 | INFO     | [payload] failed_post thread has finished
[2025-11-29 21:24:33] 2025-11-29 20:24:03,613 | INFO     | [data] control thread has finished
[2025-11-29 21:24:33] 2025-11-29 20:24:03,649 | INFO     | [payload] control thread has finished
[2025-11-29 21:24:33] 2025-11-29 20:24:03,957 | INFO     | [payload] execute_payloads thread has finished
[2025-11-29 21:24:33] 2025-11-29 20:24:04,159 | INFO     | [job] control thread has finished
[2025-11-29 21:24:33] 2025-11-29 20:24:04,315 | INFO     | [data] copytool_in thread has finished
[2025-11-29 21:24:33] 2025-11-29 20:24:04,736 | INFO     | [job] validate thread has finished
[2025-11-29 21:24:33] 2025-11-29 20:24:04,780 | INFO     | [data] copytool_out thread has finished
[2025-11-29 21:24:33] 2025-11-29 20:24:04,799 | INFO     | [payload] validate_post thread has finished
[2025-11-29 21:24:33] 2025-11-29 20:24:04,839 | INFO     | [job] create_data_payload thread has finished
[2025-11-29 21:24:33] 2025-11-29 20:24:04,932 | INFO     | [payload] validate_pre thread has finished
[2025-11-29 21:24:33] 2025-11-29 20:24:05,074 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-29 21:24:33] 2025-11-29 20:24:09,081 | INFO     | [data] queue_monitor thread has finished
[2025-11-29 21:24:33] 2025-11-29 20:24:12,695 | INFO     | job.realtimelogging is not enabled
[2025-11-29 21:24:33] 2025-11-29 20:24:13,701 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-29 21:24:33] 2025-11-29 20:24:16,802 | INFO     | [monitor] cgroup control has ended
[2025-11-29 21:24:33] 2025-11-29 20:24:16,848 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139684888942400)>', '<ExcThread(monitor, started 139684231485184)>']
[2025-11-29 21:24:33] 2025-11-29 20:24:21,873 | INFO     | all workflow threads have been joined
[2025-11-29 21:24:33] 2025-11-29 20:24:21,874 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-29 21:24:33] 2025-11-29 20:24:21,874 | INFO     | traces error code: 0
[2025-11-29 21:24:33] 2025-11-29 20:24:21,874 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-29 21:24:33] 2025-11-29 20:24:33,505 | INFO     | PID=550021 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-29 21:24:33] 2025-11-29 20:24:33,506 | INFO     | found 0 job(s) in 20 queues
[2025-11-29 21:24:33] 2025-11-29 20:24:33,506 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-29 21:24:33] 2025-11-29 20:24:33,506 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-29 21:24:33] 2025-11-29 20:24:33,506 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-29 21:24:33] 2025-11-29 20:24:33,506 | CRITICAL | thread 'MainThread' is not alive
[2025-11-29 21:24:33] 2025-11-29 20:24:33,506 | INFO     | [monitor] control thread has ended
[2025-11-29 21:24:33] 2025-11-29 20:24:33,583 [wrapper] ==== pilot stdout END ====
[2025-11-29 21:24:33] 2025-11-29 20:24:33,587 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-29 21:24:33] 2025-11-29 20:24:33,592 [wrapper] pilotpid: 550021
[2025-11-29 21:24:33] 2025-11-29 20:24:33,596 [wrapper] Pilot exit status: 0
[2025-11-29 21:24:33] 2025-11-29 20:24:33,608 [wrapper] pandaids: 6895883540
[2025-11-29 21:24:33] 2025-11-29 20:24:33,633 [wrapper] cleanup supervisor_pilot  603938 550022
[2025-11-29 21:24:33] 2025-11-29 20:24:33,637 [wrapper] Test setup, not cleaning
[2025-11-29 21:24:33] 2025-11-29 20:24:33,641 [wrapper] apfmon messages muted
[2025-11-29 21:24:33] 2025-11-29 20:24:33,646 [wrapper] ==== wrapper stdout END ====
[2025-11-29 21:24:33] 2025-11-29 20:24:33,650 [wrapper] ==== wrapper stderr END ====
[2025-11-29 21:24:33]  *** Error codes and diagnostics ***
[2025-11-29 21:24:33]     "exeErrorCode": 0,
[2025-11-29 21:24:33]     "exeErrorDiag": "",
[2025-11-29 21:24:33]     "pilotErrorCode": 0,
[2025-11-29 21:24:33]     "pilotErrorDiag": "",
[2025-11-29 21:24:33]  *** Listing of results directory ***
[2025-11-29 21:24:33] total 1307040
[2025-11-29 21:24:33] -rw-r--r-- 1 boinc boinc    576529 Nov 24 17:06 pilot3.tar.gz
[2025-11-29 21:24:33] -rw-r--r-- 1 boinc boinc      5112 Nov 24 17:46 queuedata.json
[2025-11-29 21:24:33] -rwx------ 1 boinc boinc     36292 Nov 24 17:50 runpilot2-wrapper.sh
[2025-11-29 21:24:33] -rw-r--r-- 1 boinc boinc       100 Nov 29 14:23 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-29 21:24:33] -rwxr-xr-x 1 boinc boinc      7986 Nov 29 14:23 run_atlas
[2025-11-29 21:24:33] -rw-r--r-- 1 boinc boinc       105 Nov 29 14:23 job.xml
[2025-11-29 21:24:33] -rw-r--r-- 2 boinc boinc 410236686 Nov 29 14:23 EVNT.47483658._001390.pool.root.1
[2025-11-29 21:24:33] drwxrwx--x 2 boinc boinc      4096 Nov 29 14:23 shared
[2025-11-29 21:24:33] -rw-r--r-- 2 boinc boinc    590107 Nov 29 14:23 input.tar.gz
[2025-11-29 21:24:33] -rw-r--r-- 2 boinc boinc     15847 Nov 29 14:23 start_atlas.sh
[2025-11-29 21:24:33] -rw-r--r-- 1 boinc boinc         0 Nov 29 14:23 boinc_setup_complete
[2025-11-29 21:24:33] -rw-r--r-- 1 boinc boinc      6380 Nov 29 14:23 init_data.xml
[2025-11-29 21:24:33] -rw-r--r-- 1 boinc boinc         0 Nov 29 14:23 boinc_lockfile
[2025-11-29 21:24:33] -rw-r--r-- 1 boinc boinc      2786 Nov 29 14:23 pandaJob.out
[2025-11-29 21:24:33] -rw------- 1 boinc boinc    991826 Nov 29 14:23 agis_schedconf.cvmfs.json
[2025-11-29 21:24:33] drwx------ 5 boinc boinc      4096 Nov 29 14:23 pilot3
[2025-11-29 21:24:33] -rw-r--r-- 1 boinc boinc       531 Nov 29 21:19 boinc_task_state.xml
[2025-11-29 21:24:33] -rw------- 1 boinc boinc 914633127 Nov 29 21:23 HITS.47556149._003768.pool.root.1
[2025-11-29 21:24:33] -rw------- 1 boinc boinc      1027 Nov 29 21:23 memory_monitor_summary.json
[2025-11-29 21:24:33] -rw------- 1 boinc boinc   1516240 Nov 29 21:23 agis_ddmendpoints.agis.ALL.json
[2025-11-29 21:24:33] -rw------- 1 boinc boinc   1264397 Nov 29 21:23 log.47556149._003768.job.log.tgz.1
[2025-11-29 21:24:33] -rw------- 1 boinc boinc      8572 Nov 29 21:24 heartbeat.json
[2025-11-29 21:24:33] -rw-r--r-- 1 boinc boinc      8192 Nov 29 21:24 boinc_mmap_file
[2025-11-29 21:24:33] -rw-r--r-- 1 boinc boinc        28 Nov 29 21:24 wrapper_checkpoint.txt
[2025-11-29 21:24:33] -rw------- 1 boinc boinc       816 Nov 29 21:24 pilotlog.txt
[2025-11-29 21:24:33] -rw------- 1 boinc boinc        95 Nov 29 21:24 pilot_heartbeat.json
[2025-11-29 21:24:33] -rw------- 1 boinc boinc   3546274 Nov 29 21:24 log.47556149._003768.job.log.1
[2025-11-29 21:24:33] -rw------- 1 boinc boinc       353 Nov 29 21:24 output.list
[2025-11-29 21:24:33] -rw-r--r-- 1 boinc boinc       620 Nov 29 21:24 runtime_log
[2025-11-29 21:24:33] -rw------- 1 boinc boinc   4833280 Nov 29 21:24 result.tar.gz
[2025-11-29 21:24:33] -rw-r--r-- 1 boinc boinc      8903 Nov 29 21:24 runtime_log.err
[2025-11-29 21:24:33] -rw------- 1 boinc boinc       667 Nov 29 21:24 Z2rLDmtwoh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmjmLKDmJg6oPn.diag
[2025-11-29 21:24:33] -rw-r--r-- 1 boinc boinc     21295 Nov 29 21:24 stderr.txt
[2025-11-29 21:24:33] HITS file was successfully produced:
[2025-11-29 21:24:33] -rw------- 1 boinc boinc 914633127 Nov 29 21:23 shared/HITS.pool.root.1
[2025-11-29 21:24:33]  *** Contents of shared directory: ***
[2025-11-29 21:24:33] total 1299148
[2025-11-29 21:24:33] -rw-r--r-- 2 boinc boinc 410236686 Nov 29 14:23 ATLAS.root_0
[2025-11-29 21:24:33] -rw-r--r-- 2 boinc boinc    590107 Nov 29 14:23 input.tar.gz
[2025-11-29 21:24:33] -rw-r--r-- 2 boinc boinc     15847 Nov 29 14:23 start_atlas.sh
[2025-11-29 21:24:33] -rw------- 1 boinc boinc 914633127 Nov 29 21:23 HITS.pool.root.1
[2025-11-29 21:24:33] -rw------- 1 boinc boinc   4833280 Nov 29 21:24 result.tar.gz
21:24:34 (546215): run_atlas exited; CPU time 98792.822645
21:24:34 (546215): called boinc_finish(0)

</stderr_txt>
]]>

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