Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:01:35 (2835476): wrapper (7.7.26015): starting
00:01:35 (2835476): wrapper: running run_atlas (--nthreads 9)
[2025-11-26 00:01:35] Arguments: --nthreads 9
[2025-11-26 00:01:35] Threads: 9
[2025-11-26 00:01:35] Checking for CVMFS
[2025-11-26 00:01:36] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 00:01:36] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 00:01:36] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 00:01:37] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 00:01:37] 2.13.3.0 12388 29557 225152 153309 1 472 18497715 32935936 37002 16776704 0 118332998 99.496 139734177 36404 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-26 00:01:37] CVMFS is ok
[2025-11-26 00:01:37] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 00:01:37] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 00:01:37] Further information can be found at the LHC@home message board.
[2025-11-26 00:01:37] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 00:01:37] Checking for apptainer binary...
[2025-11-26 00:01:37] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 00:01:37] Running /usr/bin/apptainer --version
[2025-11-26 00:01:37] apptainer version 1.4.4-1.el9
[2025-11-26 00:01:37] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 00:01:37] c7-4-31.aglt2.org
[2025-11-26 00:01:37] apptainer works
[2025-11-26 00:01:37] Set ATHENA_PROC_NUMBER=9
[2025-11-26 00:01:37] Set ATHENA_CORE_NUMBER=9
[2025-11-26 00:01:37] Starting ATLAS job with PandaID=6896713744
[2025-11-26 00:01:37] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/8 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 12:36:35]  *** The last 200 lines of the pilot log: ***
[2025-11-26 12:36:35] 2025-11-26 17:26:27,221 | INFO     | time since job start (44648s) is within the limit (172800.0s)
[2025-11-26 12:36:35] 2025-11-26 17:26:28,407 | INFO     | monitor loop #2737: job 0:6896713744 is in state 'finished'
[2025-11-26 12:36:35] 2025-11-26 17:26:28,408 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 12:36:35] 2025-11-26 17:26:29,228 | INFO     | time since job start (44650s) is within the limit (172800.0s)
[2025-11-26 12:36:35] 2025-11-26 17:26:30,912 | INFO     | monitor loop #2738: job 0:6896713744 is in state 'finished'
[2025-11-26 12:36:35] 2025-11-26 17:26:30,913 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 12:36:35] 2025-11-26 17:26:31,234 | INFO     | time since job start (44652s) is within the limit (172800.0s)
[2025-11-26 12:36:35] 2025-11-26 17:26:33,241 | INFO     | time since job start (44654s) is within the limit (172800.0s)
[2025-11-26 12:36:35] 2025-11-26 17:26:33,419 | INFO     | monitor loop #2739: job 0:6896713744 is in state 'finished'
[2025-11-26 12:36:35] 2025-11-26 17:26:33,420 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 12:36:35] 2025-11-26 17:26:35,248 | INFO     | time since job start (44656s) is within the limit (172800.0s)
[2025-11-26 12:36:35] 2025-11-26 17:26:35,931 | INFO     | monitor loop #2740: job 0:6896713744 is in state 'finished'
[2025-11-26 12:36:35] 2025-11-26 17:26:35,931 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 12:36:35] 2025-11-26 17:26:37,255 | INFO     | time since job start (44658s) is within the limit (172800.0s)
[2025-11-26 12:36:35] 2025-11-26 17:26:38,437 | INFO     | monitor loop #2741: job 0:6896713744 is in state 'finished'
[2025-11-26 12:36:35] 2025-11-26 17:26:38,438 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 12:36:35] 2025-11-26 17:26:39,266 | INFO     | time since job start (44660s) is within the limit (172800.0s)
[2025-11-26 12:36:35] 2025-11-26 17:26:39,288 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-26 12:36:35] 2025-11-26 17:26:39,294 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 3075.1906249999997
[2025-11-26 12:36:35] 2025-11-26 17:26:39,313 | INFO     | using path: /tmp/boinchome/slots/8/PanDA_Pilot-6896713744/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 12:36:35] 2025-11-26 17:26:39,318 | INFO     | extracted standard info from prmon json
[2025-11-26 12:36:35] 2025-11-26 17:26:39,318 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 12:36:35] 2025-11-26 17:26:39,318 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 12:36:35] 2025-11-26 17:26:39,336 | INFO     | fitting pss+swap vs Time
[2025-11-26 12:36:35] 2025-11-26 17:26:39,337 | INFO     | sum of square deviations: 120625998584.111
[2025-11-26 12:36:35] 2025-11-26 17:26:39,359 | INFO     | sum of deviations: 2732619255501.758
[2025-11-26 12:36:35] 2025-11-26 17:26:39,359 | INFO     | mean x: 1764155681.3328767
[2025-11-26 12:36:35] 2025-11-26 17:26:39,359 | INFO     | mean y: 3045615.2808219176
[2025-11-26 12:36:35] 2025-11-26 17:26:39,359 | INFO     | intersect: -39961521236.79446
[2025-11-26 12:36:35] 2025-11-26 17:26:39,364 | INFO     | chi2: 19.14603377207866
[2025-11-26 12:36:35] 2025-11-26 17:26:39,365 | INFO     | sum of square deviations: 118164472748.11871
[2025-11-26 12:36:35] 2025-11-26 17:26:39,387 | INFO     | sum of deviations: 2973242288629.571
[2025-11-26 12:36:35] 2025-11-26 17:26:39,387 | INFO     | mean x: 1764155528.8386207
[2025-11-26 12:36:35] 2025-11-26 17:26:39,387 | INFO     | mean y: 3060522.372413793
[2025-11-26 12:36:35] 2025-11-26 17:26:39,387 | INFO     | intersect: -44386439130.73852
[2025-11-26 12:36:35] 2025-11-26 17:26:39,395 | INFO     | chi2: 16.224664330510407
[2025-11-26 12:36:35] 2025-11-26 17:26:39,395 | INFO     | current chi2=16.224664330510407 (change=15.258353120783633 %)
[2025-11-26 12:36:35] 2025-11-26 17:26:39,395 | INFO     | right removable region: 724
[2025-11-26 12:36:35] 2025-11-26 17:26:39,396 | INFO     | sum of square deviations: 118164101868.11868
[2025-11-26 12:36:35] 2025-11-26 17:26:39,411 | INFO     | sum of deviations: 2414719366459.1943
[2025-11-26 12:36:35] 2025-11-26 17:26:39,411 | INFO     | mean x: 1764155833.8386207
[2025-11-26 12:36:35] 2025-11-26 17:26:39,411 | INFO     | mean y: 3065304.471724138
[2025-11-26 12:36:35] 2025-11-26 17:26:39,411 | INFO     | intersect: -36047995805.24286
[2025-11-26 12:36:35] 2025-11-26 17:26:39,412 | INFO     | chi2: 14.664363774833859
[2025-11-26 12:36:35] 2025-11-26 17:26:39,412 | INFO     | current chi2=14.664363774833859 (change=23.40782456876567 %)
[2025-11-26 12:36:35] 2025-11-26 17:26:39,412 | INFO     | left removable region: 10
[2025-11-26 12:36:35] 2025-11-26 17:26:39,413 | INFO     | sum of square deviations: 112866746600.7628
[2025-11-26 12:36:35] 2025-11-26 17:26:39,423 | INFO     | sum of deviations: 2423877343375.3584
[2025-11-26 12:36:35] 2025-11-26 17:26:39,423 | INFO     | mean x: 1764155803.3515406
[2025-11-26 12:36:35] 2025-11-26 17:26:39,423 | INFO     | mean y: 3101400.3571428573
[2025-11-26 12:36:35] 2025-11-26 17:26:39,423 | INFO     | intersect: -37883144200.86987
[2025-11-26 12:36:35] 2025-11-26 17:26:39,424 | INFO     | chi2: 7.809696047343006
[2025-11-26 12:36:35] 2025-11-26 17:26:39,424 | INFO     | current memory leak: 21.48 B/s (using 714 data points, chi2=7.81)
[2025-11-26 12:36:35] 2025-11-26 17:26:39,425 | INFO     | could have reported an average CPU frequency of 3143 MHz (28 samples)
[2025-11-26 12:36:35] 2025-11-26 17:26:39,425 | INFO     | ..............................
[2025-11-26 12:36:35] 2025-11-26 17:26:39,425 | INFO     | . Timing measurements:
[2025-11-26 12:36:35] 2025-11-26 17:26:39,425 | INFO     | . get job = 0 s
[2025-11-26 12:36:35] 2025-11-26 17:26:39,425 | INFO     | . initial setup = 4 s
[2025-11-26 12:36:35] 2025-11-26 17:26:39,425 | INFO     | . payload setup = 37 s
[2025-11-26 12:36:35] 2025-11-26 17:26:39,425 | INFO     | . stage-in = 0 s
[2025-11-26 12:36:35] 2025-11-26 17:26:39,426 | INFO     | . payload execution = 44558 s
[2025-11-26 12:36:35] 2025-11-26 17:26:39,426 | INFO     | . stage-out = 5 s
[2025-11-26 12:36:35] 2025-11-26 17:26:39,426 | INFO     | . log creation = 1 s
[2025-11-26 12:36:35] 2025-11-26 17:26:39,426 | INFO     | ..............................
[2025-11-26 12:36:35] 2025-11-26 17:26:39,582 | INFO     | 
[2025-11-26 12:36:35] 2025-11-26 17:26:39,584 | INFO     | job summary report
[2025-11-26 12:36:35] 2025-11-26 17:26:39,584 | INFO     | --------------------------------------------------
[2025-11-26 12:36:35] 2025-11-26 17:26:39,584 | INFO     | PanDA job id: 6896713744
[2025-11-26 12:36:35] 2025-11-26 17:26:39,584 | INFO     | task id: 47556161
[2025-11-26 12:36:35] 2025-11-26 17:26:39,584 | INFO     | errors: (none)
[2025-11-26 12:36:35] 2025-11-26 17:26:39,586 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 12:36:35] 2025-11-26 17:26:39,586 | INFO     | pilot state: finished 
[2025-11-26 12:36:35] 2025-11-26 17:26:39,586 | INFO     | transexitcode: 0
[2025-11-26 12:36:35] 2025-11-26 17:26:39,587 | INFO     | exeerrorcode: 0
[2025-11-26 12:36:35] 2025-11-26 17:26:39,587 | INFO     | exeerrordiag: 
[2025-11-26 12:36:35] 2025-11-26 17:26:39,587 | INFO     | exitcode: 0
[2025-11-26 12:36:35] 2025-11-26 17:26:39,587 | INFO     | exitmsg: OK
[2025-11-26 12:36:35] 2025-11-26 17:26:39,588 | INFO     | cpuconsumptiontime: 200421 s
[2025-11-26 12:36:35] 2025-11-26 17:26:39,588 | INFO     | nevents: 1000
[2025-11-26 12:36:35] 2025-11-26 17:26:39,588 | INFO     | neventsw: 0
[2025-11-26 12:36:35] 2025-11-26 17:26:39,588 | INFO     | pid: 2856687
[2025-11-26 12:36:35] 2025-11-26 17:26:39,588 | INFO     | pgrp: 2856687
[2025-11-26 12:36:35] 2025-11-26 17:26:39,588 | INFO     | corecount: 9
[2025-11-26 12:36:35] 2025-11-26 17:26:39,588 | INFO     | event service: False
[2025-11-26 12:36:35] 2025-11-26 17:26:39,588 | INFO     | sizes: {0: 2283433, 1: 2284118, 2: 2284317, 13: 2284317, 18: 2284635, 23: 2284663, 44601: 2330893, 44607: 2339887, 44609: 2339943, 44621: 2340189}
[2025-11-26 12:36:35] 2025-11-26 17:26:39,588 | INFO     | --------------------------------------------------
[2025-11-26 12:36:35] 2025-11-26 17:26:39,589 | INFO     | 
[2025-11-26 12:36:35] 2025-11-26 17:26:39,589 | INFO     | executing command: ls -lF /tmp/boinchome/slots/8
[2025-11-26 12:36:35] 2025-11-26 17:26:39,622 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 12:36:35] 2025-11-26 17:26:39,623 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 12:36:35] 2025-11-26 17:26:39,623 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 12:36:35] 2025-11-26 17:26:39,623 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 12:36:35] 2025-11-26 17:26:39,623 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 12:36:35] 2025-11-26 17:26:39,623 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 12:36:35] 2025-11-26 17:26:39,623 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 12:36:35] 2025-11-26 17:26:39,623 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 12:36:35] 2025-11-26 17:26:39,624 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 12:36:35] 2025-11-26 17:26:39,624 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 12:36:35] 2025-11-26 17:26:39,624 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 12:36:35] 2025-11-26 17:26:39,624 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 12:36:35] 2025-11-26 17:26:39,624 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 12:36:35] 2025-11-26 17:26:39,624 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 12:36:35] 2025-11-26 17:26:39,624 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 12:36:35] 2025-11-26 17:26:39,625 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 12:36:35] 2025-11-26 17:26:39,625 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 12:36:35] 2025-11-26 17:26:39,625 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 12:36:35] 2025-11-26 17:26:39,625 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 12:36:35] 2025-11-26 17:26:39,625 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 12:36:35] 2025-11-26 17:26:39,625 | INFO     | job 6896713744 has completed (purged errors)
[2025-11-26 12:36:35] 2025-11-26 17:26:39,626 | INFO     | overall cleanup function is called
[2025-11-26 12:36:35] 2025-11-26 17:26:40,645 | INFO     | --- collectZombieJob: --- 10, [2856687]
[2025-11-26 12:36:35] 2025-11-26 17:26:40,646 | INFO     | zombie collector waiting for pid 2856687
[2025-11-26 12:36:35] 2025-11-26 17:26:40,646 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 12:36:35] 2025-11-26 17:26:40,646 | INFO     | collected zombie processes
[2025-11-26 12:36:35] 2025-11-26 17:26:40,646 | INFO     | will attempt to kill all subprocesses of pid=2856687
[2025-11-26 12:36:35] 2025-11-26 17:26:41,505 | INFO     | process IDs to be killed: [2856687] (in reverse order)
[2025-11-26 12:36:35] 2025-11-26 17:26:41,922 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 12:36:35] 2025-11-26 17:26:41,923 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 12:36:35] 2025-11-26 17:26:41,974 | INFO     | did not find any defunct processes belonging to 2856687
[2025-11-26 12:36:35] 2025-11-26 17:26:42,033 | INFO     | did not find any defunct processes belonging to 2856687
[2025-11-26 12:36:35] 2025-11-26 17:26:42,037 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 12:36:35] 2025-11-26 17:26:42,038 | INFO     | ready for new job
[2025-11-26 12:36:35] 2025-11-26 17:26:42,038 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 12:36:35] 2025-11-26 17:26:42,041 | INFO     | ***************************************
[2025-11-26 12:36:35] 2025-11-26 17:26:42,041 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 12:36:35] 2025-11-26 17:26:42,041 | INFO     | ***************************************
[2025-11-26 12:36:35] 2025-11-26 17:26:42,045 | INFO     | 
[2025-11-26 12:36:35] 2025-11-26 17:26:42,058 | INFO     | architecture information:
[2025-11-26 12:36:35] 2025-11-26 17:26:42,063 | INFO     | executing command: cat /etc/os-release
[2025-11-26 12:36:35] 2025-11-26 17:26:42,182 | INFO     | cat /etc/os-release:
[2025-11-26 12:36:35] NAME="CentOS Linux"
[2025-11-26 12:36:35] VERSION="7 (Core)"
[2025-11-26 12:36:35] ID="centos"
[2025-11-26 12:36:35] ID_LIKE="rhel fedora"
[2025-11-26 12:36:35] VERSION_ID="7"
[2025-11-26 12:36:35] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 12:36:35] ANSI_COLOR="0;31"
[2025-11-26 12:36:35] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 12:36:35] HOME_URL="https://www.centos.org/"
[2025-11-26 12:36:35] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 12:36:35] 
[2025-11-26 12:36:35] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 12:36:35] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 12:36:35] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 12:36:35] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 12:36:35] 
[2025-11-26 12:36:35] 2025-11-26 17:26:42,183 | INFO     | ***************************************
[2025-11-26 12:36:35] 2025-11-26 17:26:42,686 | INFO     | executing command: df -mP /tmp/boinchome/slots/8
[2025-11-26 12:36:35] 2025-11-26 17:26:42,737 | INFO     | sufficient remaining disk space (66159902720 B)
[2025-11-26 12:36:35] 2025-11-26 17:26:42,737 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 12:36:35] 2025-11-26 17:26:42,738 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 12:36:35] 2025-11-26 17:26:42,738 | INFO     | update_server=False
[2025-11-26 12:36:35] 2025-11-26 17:26:42,738 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 12:36:35] 2025-11-26 17:26:42,738 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 12:36:35] 2025-11-26 17:26:42,738 | INFO     | aborting loop
[2025-11-26 12:36:35] 2025-11-26 17:26:43,171 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 12:36:35] 2025-11-26 17:26:43,452 | INFO     | all job control threads have been joined
[2025-11-26 12:36:35] 2025-11-26 17:26:43,637 | INFO     | all data control threads have been joined
[2025-11-26 12:36:35] 2025-11-26 17:26:43,744 | INFO     | [job] retrieve thread has finished
[2025-11-26 12:36:35] 2025-11-26 17:26:43,744 | INFO     | [job] job monitor thread has finished
[2025-11-26 12:36:35] 2025-11-26 17:26:43,750 | INFO     | [data] copytool_in thread has finished
[2025-11-26 12:36:35] 2025-11-26 17:26:44,038 | INFO     | all payload control threads have been joined
[2025-11-26 12:36:35] 2025-11-26 17:26:44,053 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 12:36:35] 2025-11-26 17:26:44,298 | INFO     | [payload] validate_post thread has finished
[2025-11-26 12:36:35] 2025-11-26 17:26:44,485 | INFO     | [job] control thread has finished
[2025-11-26 12:36:35] 2025-11-26 17:26:44,529 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 12:36:35] 2025-11-26 17:26:44,645 | INFO     | [data] control thread has finished
[2025-11-26 12:36:35] 2025-11-26 17:26:44,774 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 12:36:35] 2025-11-26 17:26:45,043 | INFO     | [payload] control thread has finished
[2025-11-26 12:36:35] 2025-11-26 17:26:45,061 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 12:36:35] 2025-11-26 17:26:45,140 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 12:36:35] 2025-11-26 17:26:45,178 | INFO     | [data] copytool_out thread has finished
[2025-11-26 12:36:35] 2025-11-26 17:26:45,192 | INFO     | [job] validate thread has finished
[2025-11-26 12:36:35] 2025-11-26 17:26:45,240 | INFO     | [payload] failed_post thread has finished
[2025-11-26 12:36:35] 2025-11-26 17:26:45,537 | INFO     | [job] queue monitor thread has finished
[2025-11-26 12:36:35] 2025-11-26 17:26:46,208 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 12:36:35] 2025-11-26 17:26:50,260 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 12:36:35] 2025-11-26 17:27:13,544 | INFO     | PID=2841809 has CPU usage=7.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-26 12:36:35] 2025-11-26 17:27:13,545 | INFO     | .. there are 46 such processes running
[2025-11-26 12:36:35] 2025-11-26 17:27:13,545 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 12:36:35] 2025-11-26 17:27:13,545 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 12:36:35] 2025-11-26 17:27:13,546 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 12:36:35] 2025-11-26 17:27:37,225 | INFO     | [monitor] cgroup control has ended
[2025-11-26 12:36:35] 2025-11-26 17:27:39,279 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139761844762432)>', '<ExcThread(monitor, started 139760920164096)>']
[2025-11-26 12:36:35] 2025-11-26 17:27:39,730 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 12:36:35] 2025-11-26 17:27:39,731 | INFO     | [monitor] control thread has ended
[2025-11-26 12:36:35] 2025-11-26 17:27:44,306 | INFO     | all workflow threads have been joined
[2025-11-26 12:36:35] 2025-11-26 17:27:44,307 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 12:36:35] 2025-11-26 17:27:44,307 | INFO     | traces error code: 0
[2025-11-26 12:36:35] 2025-11-26 17:27:44,307 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 12:36:35] 2025-11-26 17:27:44,808 [wrapper] ==== pilot stdout END ====
[2025-11-26 12:36:35] 2025-11-26 17:27:44,812 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 12:36:35] 2025-11-26 17:27:44,815 [wrapper] pilotpid: 2841809
[2025-11-26 12:36:35] 2025-11-26 17:27:44,819 [wrapper] Pilot exit status: 0
[2025-11-26 12:36:35] 2025-11-26 17:27:44,838 [wrapper] pandaids: 6896713744
[2025-11-26 12:36:35] 2025-11-26 17:27:44,973 [wrapper] cleanup supervisor_pilot 2124634 2841810
[2025-11-26 12:36:35] 2025-11-26 17:27:44,976 [wrapper] Test setup, not cleaning
[2025-11-26 12:36:35] 2025-11-26 17:27:44,980 [wrapper] apfmon messages muted
[2025-11-26 12:36:35] 2025-11-26 17:27:44,983 [wrapper] ==== wrapper stdout END ====
[2025-11-26 12:36:35] 2025-11-26 17:27:44,990 [wrapper] ==== wrapper stderr END ====
[2025-11-26 12:36:35]  *** Error codes and diagnostics ***
[2025-11-26 12:36:35]     "exeErrorCode": 0,
[2025-11-26 12:36:35]     "exeErrorDiag": "",
[2025-11-26 12:36:35]     "pilotErrorCode": 0,
[2025-11-26 12:36:35]     "pilotErrorDiag": "",
[2025-11-26 12:36:35]  *** Listing of results directory ***
[2025-11-26 12:36:35] total 1312484
[2025-11-26 12:36:35] -rw-r--r--. 1 boincer umatlas    576529 Nov 25 00:12 pilot3.tar.gz
[2025-11-26 12:36:35] -rw-r--r--. 1 boincer umatlas      5112 Nov 25 00:41 queuedata.json
[2025-11-26 12:36:35] -rwx------. 1 boincer umatlas     36292 Nov 25 00:45 runpilot2-wrapper.sh
[2025-11-26 12:36:35] -rw-r--r--. 1 boincer umatlas       100 Nov 26 00:01 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 12:36:35] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 26 00:01 run_atlas
[2025-11-26 12:36:35] -rw-r--r--. 1 boincer umatlas       105 Nov 26 00:01 job.xml
[2025-11-26 12:36:35] -rw-r--r--. 2 boincer umatlas 409247730 Nov 26 00:01 EVNT.47483658._002110.pool.root.1
[2025-11-26 12:36:35] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 00:01 start_atlas.sh
[2025-11-26 12:36:35] drwxrwx--x. 2 boincer umatlas      4096 Nov 26 00:01 shared
[2025-11-26 12:36:35] -rw-r--r--. 2 boincer umatlas    590107 Nov 26 00:01 input.tar.gz
[2025-11-26 12:36:35] -rw-r--r--. 1 boincer umatlas         0 Nov 26 00:01 boinc_lockfile
[2025-11-26 12:36:35] -rw-r--r--. 1 boincer umatlas      2783 Nov 26 00:01 pandaJob.out
[2025-11-26 12:36:35] -rw-------. 1 boincer umatlas        57 Nov 26 00:01 setup.sh.local
[2025-11-26 12:36:35] -rw-------. 1 boincer umatlas    991877 Nov 26 00:02 agis_schedconf.cvmfs.json
[2025-11-26 12:36:35] drwx------. 5 boincer umatlas      4096 Nov 26 00:02 pilot3
[2025-11-26 12:36:35] -rw-r--r--. 1 boincer umatlas       533 Nov 26 12:09 boinc_task_state.xml
[2025-11-26 12:36:35] -rw-------. 1 boincer umatlas 915187610 Nov 26 12:25 HITS.47556161._000934.pool.root.1
[2025-11-26 12:36:35] -rw-------. 1 boincer umatlas      1072 Nov 26 12:26 memory_monitor_summary.json
[2025-11-26 12:36:35] -rw-------. 1 boincer umatlas   1516240 Nov 26 12:26 agis_ddmendpoints.agis.ALL.json
[2025-11-26 12:36:35] -rw-------. 1 boincer umatlas   2051183 Nov 26 12:26 log.47556161._000934.job.log.tgz.1
[2025-11-26 12:36:35] -rw-------. 1 boincer umatlas      8635 Nov 26 12:26 heartbeat.json
[2025-11-26 12:36:35] -rw-------. 1 boincer umatlas        95 Nov 26 12:27 pilot_heartbeat.json
[2025-11-26 12:36:35] -rw-------. 1 boincer umatlas      4824 Nov 26 12:27 pilotlog.txt
[2025-11-26 12:36:35] -rw-------. 1 boincer umatlas   5762173 Nov 26 12:27 log.47556161._000934.job.log.1
[2025-11-26 12:36:35] -rw-------. 1 boincer umatlas       353 Nov 26 12:27 output.list
[2025-11-26 12:36:35] -rw-r--r--. 1 boincer umatlas       620 Nov 26 12:27 runtime_log
[2025-11-26 12:36:35] -rw-------. 1 boincer umatlas   7833600 Nov 26 12:27 result.tar.gz
[2025-11-26 12:36:35] -rw-r--r--. 1 boincer umatlas      9338 Nov 26 12:27 runtime_log.err
[2025-11-26 12:36:35] -rw-------. 1 boincer umatlas       664 Nov 26 12:27 3l1LDmm20h8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmSBMKDm5S8vYn.diag
[2025-11-26 12:36:35] -rw-r--r--. 1 boincer umatlas        29 Nov 26 12:36 wrapper_checkpoint.txt
[2025-11-26 12:36:35] -rw-r--r--. 1 boincer umatlas      6947 Nov 26 12:36 init_data.xml
[2025-11-26 12:36:35] -rw-r--r--. 1 boincer umatlas      8192 Nov 26 12:36 boinc_mmap_file
[2025-11-26 12:36:35] -rw-r--r--. 1 boincer umatlas     21800 Nov 26 12:36 stderr.txt
[2025-11-26 12:36:35] HITS file was successfully produced:
[2025-11-26 12:36:35] -rw-------. 1 boincer umatlas 915187610 Nov 26 12:25 shared/HITS.pool.root.1
[2025-11-26 12:36:35]  *** Contents of shared directory: ***
[2025-11-26 12:36:35] total 1301652
[2025-11-26 12:36:35] -rw-r--r--. 2 boincer umatlas 409247730 Nov 26 00:01 ATLAS.root_0
[2025-11-26 12:36:35] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 00:01 start_atlas.sh
[2025-11-26 12:36:35] -rw-r--r--. 2 boincer umatlas    590107 Nov 26 00:01 input.tar.gz
[2025-11-26 12:36:35] -rw-------. 1 boincer umatlas 915187610 Nov 26 12:25 HITS.pool.root.1
[2025-11-26 12:36:35] -rw-------. 1 boincer umatlas   7833600 Nov 26 12:27 result.tar.gz
12:36:37 (2835476): run_atlas exited; CPU time 201523.507521
12:36:37 (2835476): called boinc_finish(0)

</stderr_txt>
]]>

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