Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
21:59:12 (468977): wrapper (7.7.26015): starting
21:59:12 (468977): wrapper: running run_atlas (--nthreads 8)
[2025-11-25 21:59:12] Arguments: --nthreads 8
[2025-11-25 21:59:12] Threads: 8
[2025-11-25 21:59:12] Checking for CVMFS
[2025-11-25 21:59:12] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 21:59:13] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 21:59:13] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 21:59:14] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 21:59:14] 2.13.3.0 12348 29482 377412 153305 2 381 30645497 32935936 33889 16776704 0 146512061 99.488 188541672 35502 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-25 21:59:14] CVMFS is ok
[2025-11-25 21:59:14] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 21:59:14] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 21:59:14] Further information can be found at the LHC@home message board.
[2025-11-25 21:59:14] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 21:59:14] Checking for apptainer binary...
[2025-11-25 21:59:14] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 21:59:14] Running /usr/bin/apptainer --version
[2025-11-25 21:59:14] apptainer version 1.4.4-1.el9
[2025-11-25 21:59:14] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 21:59:15] c6-12-27-2.aglt2.org
[2025-11-25 21:59:15] apptainer works
[2025-11-25 21:59:15] Set ATHENA_PROC_NUMBER=8
[2025-11-25 21:59:15] Set ATHENA_CORE_NUMBER=8
[2025-11-25 21:59:15] Starting ATLAS job with PandaID=6897394451
[2025-11-25 21:59:15] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/6 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 11:02:36]  *** The last 200 lines of the pilot log: ***
[2025-11-27 11:02:37] 2025-11-27 16:01:53,280 | INFO     | time since job start (133302s) is within the limit (172800.0s)
[2025-11-27 11:02:37] 2025-11-27 16:01:54,605 | INFO     | monitor loop #7209: job 0:6897394451 is in state 'finished'
[2025-11-27 11:02:37] 2025-11-27 16:01:54,605 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 11:02:37] 2025-11-27 16:01:56,461 | INFO     | PID=476121 has CPU usage=4.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-27 11:02:37] 2025-11-27 16:01:56,461 | INFO     | .. there are 47 such processes running
[2025-11-27 11:02:37] 2025-11-27 16:01:56,726 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-27 11:02:37] 2025-11-27 16:01:56,759 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2671.6962812499996
[2025-11-27 11:02:37] 2025-11-27 16:01:56,804 | INFO     | using path: /tmp/boinchome/slots/6/PanDA_Pilot-6897394451/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 11:02:37] 2025-11-27 16:01:56,805 | INFO     | extracted standard info from prmon json
[2025-11-27 11:02:37] 2025-11-27 16:01:56,805 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 11:02:37] 2025-11-27 16:01:56,805 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 11:02:37] 2025-11-27 16:01:56,881 | INFO     | fitting pss+swap vs Time
[2025-11-27 11:02:37] 2025-11-27 16:01:56,888 | INFO     | sum of square deviations: 3225768866518.853
[2025-11-27 11:02:37] 2025-11-27 16:01:57,137 | INFO     | sum of deviations: 9796065025326.451
[2025-11-27 11:02:37] 2025-11-27 16:01:57,142 | INFO     | mean x: 1764192691.9285388
[2025-11-27 11:02:37] 2025-11-27 16:01:57,142 | INFO     | mean y: 2953946.278515804
[2025-11-27 11:02:37] 2025-11-27 16:01:57,143 | INFO     | intersect: -5354573837.783713
[2025-11-27 11:02:37] 2025-11-27 16:01:57,146 | INFO     | chi2: 13.243496556440746
[2025-11-27 11:02:37] 2025-11-27 16:01:57,153 | INFO     | sum of square deviations: 3203655933777.2373
[2025-11-27 11:02:37] 2025-11-27 16:01:57,137 | INFO     | monitor loop #7210: job 0:6897394451 is in state 'finished'
[2025-11-27 11:02:37] 2025-11-27 16:01:57,166 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 11:02:37] 2025-11-27 16:01:57,354 | INFO     | sum of deviations: 10538081079237.66
[2025-11-27 11:02:37] 2025-11-27 16:01:57,354 | INFO     | mean x: 1764192539.4348025
[2025-11-27 11:02:37] 2025-11-27 16:01:57,354 | INFO     | mean y: 2959062.6983471075
[2025-11-27 11:02:37] 2025-11-27 16:01:57,355 | INFO     | intersect: -5800162247.532482
[2025-11-27 11:02:37] 2025-11-27 16:01:57,361 | INFO     | chi2: 10.138002752491563
[2025-11-27 11:02:37] 2025-11-27 16:01:57,362 | INFO     | current chi2=10.138002752491563 (change=23.449198561076987 %)
[2025-11-27 11:02:37] 2025-11-27 16:01:57,362 | INFO     | right removable region: 2177
[2025-11-27 11:02:37] 2025-11-27 16:01:57,369 | INFO     | sum of square deviations: 3203652167083.37
[2025-11-27 11:02:37] 2025-11-27 16:01:57,470 | INFO     | time since job start (133306s) is within the limit (172800.0s)
[2025-11-27 11:02:37] 2025-11-27 16:01:57,580 | INFO     | sum of deviations: 8986410944024.025
[2025-11-27 11:02:37] 2025-11-27 16:01:57,581 | INFO     | mean x: 1764192844.4352617
[2025-11-27 11:02:37] 2025-11-27 16:01:57,581 | INFO     | mean y: 2959528.095959596
[2025-11-27 11:02:37] 2025-11-27 16:01:57,581 | INFO     | intersect: -4945693152.583572
[2025-11-27 11:02:37] 2025-11-27 16:01:57,588 | INFO     | chi2: 9.887096610540453
[2025-11-27 11:02:37] 2025-11-27 16:01:57,589 | INFO     | current chi2=9.887096610540453 (change=25.343759720826643 %)
[2025-11-27 11:02:37] 2025-11-27 16:01:57,596 | INFO     | sum of square deviations: 3181637170217.3403
[2025-11-27 11:02:37] 2025-11-27 16:01:57,801 | INFO     | sum of deviations: 8710495240120.836
[2025-11-27 11:02:37] 2025-11-27 16:01:57,801 | INFO     | mean x: 1764192996.940635
[2025-11-27 11:02:37] 2025-11-27 16:01:57,801 | INFO     | mean y: 2961438.564657156
[2025-11-27 11:02:37] 2025-11-27 16:01:57,801 | INFO     | intersect: -4826940237.953719
[2025-11-27 11:02:37] 2025-11-27 16:01:57,808 | INFO     | chi2: 9.536850655440047
[2025-11-27 11:02:37] 2025-11-27 16:01:57,808 | INFO     | current chi2=9.536850655440047 (change=3.542455069438849 %)
[2025-11-27 11:02:37] 2025-11-27 16:01:57,808 | INFO     | left removable region: 20
[2025-11-27 11:02:37] 2025-11-27 16:01:57,811 | INFO     | sum of square deviations: 3111872754930.4565
[2025-11-27 11:02:37] 2025-11-27 16:01:58,016 | INFO     | sum of deviations: 9323770042906.75
[2025-11-27 11:02:37] 2025-11-27 16:01:58,036 | INFO     | mean x: 1764193118.954103
[2025-11-27 11:02:37] 2025-11-27 16:01:58,037 | INFO     | mean y: 2969807.250347705
[2025-11-27 11:02:37] 2025-11-27 16:01:58,037 | INFO     | intersect: -5282892516.7617035
[2025-11-27 11:02:37] 2025-11-27 16:01:58,048 | INFO     | chi2: 5.595350746117239
[2025-11-27 11:02:37] 2025-11-27 16:01:58,048 | INFO     | current memory leak: 3.00 B/s (using 2157 data points, chi2=5.60)
[2025-11-27 11:02:37] 2025-11-27 16:01:58,052 | INFO     | could have reported an average CPU frequency of 2686 MHz (76 samples)
[2025-11-27 11:02:37] 2025-11-27 16:01:58,060 | INFO     | ..............................
[2025-11-27 11:02:37] 2025-11-27 16:01:58,060 | INFO     | . Timing measurements:
[2025-11-27 11:02:37] 2025-11-27 16:01:58,060 | INFO     | . get job = 0 s
[2025-11-27 11:02:37] 2025-11-27 16:01:58,061 | INFO     | . initial setup = 4 s
[2025-11-27 11:02:37] 2025-11-27 16:01:58,061 | INFO     | . payload setup = 40 s
[2025-11-27 11:02:37] 2025-11-27 16:01:58,061 | INFO     | . stage-in = 0 s
[2025-11-27 11:02:37] 2025-11-27 16:01:58,061 | INFO     | . payload execution = 133163 s
[2025-11-27 11:02:37] 2025-11-27 16:01:58,061 | INFO     | . stage-out = 12 s
[2025-11-27 11:02:37] 2025-11-27 16:01:58,061 | INFO     | . log creation = 3 s
[2025-11-27 11:02:37] 2025-11-27 16:01:58,061 | INFO     | ..............................
[2025-11-27 11:02:37] 2025-11-27 16:01:58,290 | INFO     | 
[2025-11-27 11:02:37] 2025-11-27 16:01:58,292 | INFO     | job summary report
[2025-11-27 11:02:37] 2025-11-27 16:01:58,292 | INFO     | --------------------------------------------------
[2025-11-27 11:02:37] 2025-11-27 16:01:58,292 | INFO     | PanDA job id: 6897394451
[2025-11-27 11:02:37] 2025-11-27 16:01:58,292 | INFO     | task id: 47556161
[2025-11-27 11:02:37] 2025-11-27 16:01:58,292 | INFO     | errors: (none)
[2025-11-27 11:02:37] 2025-11-27 16:01:58,293 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 11:02:37] 2025-11-27 16:01:58,293 | INFO     | pilot state: finished 
[2025-11-27 11:02:37] 2025-11-27 16:01:58,293 | INFO     | transexitcode: 0
[2025-11-27 11:02:37] 2025-11-27 16:01:58,293 | INFO     | exeerrorcode: 0
[2025-11-27 11:02:37] 2025-11-27 16:01:58,293 | INFO     | exeerrordiag: 
[2025-11-27 11:02:37] 2025-11-27 16:01:58,293 | INFO     | exitcode: 0
[2025-11-27 11:02:37] 2025-11-27 16:01:58,293 | INFO     | exitmsg: OK
[2025-11-27 11:02:37] 2025-11-27 16:01:58,293 | INFO     | cpuconsumptiontime: 272324 s
[2025-11-27 11:02:37] 2025-11-27 16:01:58,293 | INFO     | nevents: 1000
[2025-11-27 11:02:37] 2025-11-27 16:01:58,293 | INFO     | neventsw: 0
[2025-11-27 11:02:37] 2025-11-27 16:01:58,293 | INFO     | pid: 501602
[2025-11-27 11:02:37] 2025-11-27 16:01:58,293 | INFO     | pgrp: 501602
[2025-11-27 11:02:37] 2025-11-27 16:01:58,293 | INFO     | corecount: 8
[2025-11-27 11:02:37] 2025-11-27 16:01:58,294 | INFO     | event service: False
[2025-11-27 11:02:37] 2025-11-27 16:01:58,294 | INFO     | sizes: {0: 2284094, 1: 2284293, 12: 2284293, 23: 2284321, 29: 2284611, 34: 2284639, 133204: 2368715, 133205: 2368714, 133218: 2377764, 133221: 2377820, 133246: 237
[2025-11-27 11:02:37] 2025-11-27 16:01:58,294 | INFO     | --------------------------------------------------
[2025-11-27 11:02:37] 2025-11-27 16:01:58,294 | INFO     | 
[2025-11-27 11:02:37] 2025-11-27 16:01:58,294 | INFO     | executing command: ls -lF /tmp/boinchome/slots/6
[2025-11-27 11:02:37] 2025-11-27 16:01:58,361 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 11:02:37] 2025-11-27 16:01:58,362 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 11:02:37] 2025-11-27 16:01:58,362 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 11:02:37] 2025-11-27 16:01:58,362 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 11:02:37] 2025-11-27 16:01:58,362 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 11:02:37] 2025-11-27 16:01:58,362 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 11:02:37] 2025-11-27 16:01:58,362 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 11:02:37] 2025-11-27 16:01:58,362 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 11:02:37] 2025-11-27 16:01:58,362 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 11:02:37] 2025-11-27 16:01:58,362 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 11:02:37] 2025-11-27 16:01:58,362 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 11:02:37] 2025-11-27 16:01:58,362 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 11:02:37] 2025-11-27 16:01:58,362 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 11:02:37] 2025-11-27 16:01:58,362 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 11:02:37] 2025-11-27 16:01:58,363 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 11:02:37] 2025-11-27 16:01:58,363 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 11:02:37] 2025-11-27 16:01:58,363 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 11:02:37] 2025-11-27 16:01:58,363 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 11:02:37] 2025-11-27 16:01:58,363 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 11:02:37] 2025-11-27 16:01:58,363 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 11:02:37] 2025-11-27 16:01:58,363 | INFO     | job 6897394451 has completed (purged errors)
[2025-11-27 11:02:37] 2025-11-27 16:01:58,363 | INFO     | overall cleanup function is called
[2025-11-27 11:02:37] 2025-11-27 16:01:59,426 | INFO     | --- collectZombieJob: --- 10, [501602]
[2025-11-27 11:02:37] 2025-11-27 16:01:59,426 | INFO     | zombie collector waiting for pid 501602
[2025-11-27 11:02:37] 2025-11-27 16:01:59,426 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 11:02:37] 2025-11-27 16:01:59,426 | INFO     | collected zombie processes
[2025-11-27 11:02:37] 2025-11-27 16:01:59,426 | INFO     | will attempt to kill all subprocesses of pid=501602
[2025-11-27 11:02:37] 2025-11-27 16:02:00,572 | INFO     | process IDs to be killed: [501602] (in reverse order)
[2025-11-27 11:02:37] 2025-11-27 16:02:00,918 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 11:02:37] 2025-11-27 16:02:00,950 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 11:02:37] 2025-11-27 16:02:01,069 | INFO     | did not find any defunct processes belonging to 501602
[2025-11-27 11:02:37] 2025-11-27 16:02:01,092 | INFO     | did not find any defunct processes belonging to 501602
[2025-11-27 11:02:37] 2025-11-27 16:02:01,094 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 11:02:37] 2025-11-27 16:02:01,094 | INFO     | ready for new job
[2025-11-27 11:02:37] 2025-11-27 16:02:01,094 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 11:02:37] 2025-11-27 16:02:01,113 | INFO     | ***************************************
[2025-11-27 11:02:37] 2025-11-27 16:02:01,118 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 11:02:37] 2025-11-27 16:02:01,118 | INFO     | ***************************************
[2025-11-27 11:02:37] 2025-11-27 16:02:01,118 | INFO     | 
[2025-11-27 11:02:37] 2025-11-27 16:02:01,129 | INFO     | architecture information:
[2025-11-27 11:02:37] 2025-11-27 16:02:01,137 | INFO     | executing command: cat /etc/os-release
[2025-11-27 11:02:37] 2025-11-27 16:02:01,229 | INFO     | cat /etc/os-release:
[2025-11-27 11:02:37] NAME="CentOS Linux"
[2025-11-27 11:02:37] VERSION="7 (Core)"
[2025-11-27 11:02:37] ID="centos"
[2025-11-27 11:02:37] ID_LIKE="rhel fedora"
[2025-11-27 11:02:37] VERSION_ID="7"
[2025-11-27 11:02:37] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 11:02:37] ANSI_COLOR="0;31"
[2025-11-27 11:02:37] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 11:02:37] HOME_URL="https://www.centos.org/"
[2025-11-27 11:02:37] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 11:02:37] 
[2025-11-27 11:02:37] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 11:02:37] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 11:02:37] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 11:02:37] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 11:02:37] 
[2025-11-27 11:02:37] 2025-11-27 16:02:01,229 | INFO     | ***************************************
[2025-11-27 11:02:37] 2025-11-27 16:02:01,733 | INFO     | executing command: df -mP /tmp/boinchome/slots/6
[2025-11-27 11:02:37] 2025-11-27 16:02:01,909 | INFO     | sufficient remaining disk space (86047195136 B)
[2025-11-27 11:02:37] 2025-11-27 16:02:01,910 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 11:02:37] 2025-11-27 16:02:01,910 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 11:02:37] 2025-11-27 16:02:01,910 | INFO     | update_server=False
[2025-11-27 11:02:37] 2025-11-27 16:02:01,910 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 11:02:37] 2025-11-27 16:02:01,911 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 11:02:37] 2025-11-27 16:02:01,913 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 11:02:37] 2025-11-27 16:02:01,955 | INFO     | all job control threads have been joined
[2025-11-27 11:02:37] 2025-11-27 16:02:02,161 | INFO     | all data control threads have been joined
[2025-11-27 11:02:37] 2025-11-27 16:02:02,208 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-27 11:02:37] 2025-11-27 16:02:02,210 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-27 11:02:37] 2025-11-27 16:02:02,210 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 11:02:37] 2025-11-27 16:02:02,210 | INFO     | will abort loop
[2025-11-27 11:02:37] 2025-11-27 16:02:02,565 | INFO     | all payload control threads have been joined
[2025-11-27 11:02:37] 2025-11-27 16:02:02,925 | INFO     | [job] retrieve thread has finished
[2025-11-27 11:02:37] 2025-11-27 16:02:02,961 | INFO     | [job] control thread has finished
[2025-11-27 11:02:37] 2025-11-27 16:02:03,167 | INFO     | [data] control thread has finished
[2025-11-27 11:02:37] 2025-11-27 16:02:03,216 | INFO     | [job] job monitor thread has finished
[2025-11-27 11:02:37] 2025-11-27 16:02:03,239 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 11:02:37] 2025-11-27 16:02:03,243 | INFO     | [job] validate thread has finished
[2025-11-27 11:02:37] 2025-11-27 16:02:03,247 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 11:02:37] 2025-11-27 16:02:03,305 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 11:02:37] 2025-11-27 16:02:03,571 | INFO     | [payload] control thread has finished
[2025-11-27 11:02:37] 2025-11-27 16:02:03,923 | INFO     | [data] copytool_out thread has finished
[2025-11-27 11:02:37] 2025-11-27 16:02:03,999 | INFO     | [payload] validate_post thread has finished
[2025-11-27 11:02:37] 2025-11-27 16:02:04,155 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 11:02:37] 2025-11-27 16:02:04,158 | INFO     | [payload] failed_post thread has finished
[2025-11-27 11:02:37] 2025-11-27 16:02:04,187 | INFO     | [data] copytool_in thread has finished
[2025-11-27 11:02:37] 2025-11-27 16:02:04,195 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 11:02:37] 2025-11-27 16:02:04,312 | INFO     | [job] queue monitor thread has finished
[2025-11-27 11:02:37] 2025-11-27 16:02:05,924 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 11:02:37] 2025-11-27 16:02:17,122 | INFO     | [monitor] cgroup control has ended
[2025-11-27 11:02:37] 2025-11-27 16:02:17,138 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140316006139712)>', '<ExcThread(monitor, started 140315365205760)>']
[2025-11-27 11:02:37] 2025-11-27 16:02:22,165 | INFO     | all workflow threads have been joined
[2025-11-27 11:02:37] 2025-11-27 16:02:22,165 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 11:02:37] 2025-11-27 16:02:22,165 | INFO     | traces error code: 0
[2025-11-27 11:02:37] 2025-11-27 16:02:22,166 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 11:02:37] 2025-11-27 16:02:34,639 | INFO     | PID=476121 has CPU usage=6.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-27 11:02:37] 2025-11-27 16:02:34,639 | INFO     | .. there are 46 such processes running
[2025-11-27 11:02:37] 2025-11-27 16:02:34,640 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 11:02:37] 2025-11-27 16:02:34,641 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 11:02:37] 2025-11-27 16:02:34,641 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 11:02:37] 2025-11-27 16:02:34,641 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 11:02:37] 2025-11-27 16:02:34,641 | INFO     | [monitor] control thread has ended
[2025-11-27 11:02:37] 2025-11-27 16:02:35,572 [wrapper] ==== pilot stdout END ====
[2025-11-27 11:02:37] 2025-11-27 16:02:35,605 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 11:02:37] 2025-11-27 16:02:35,622 [wrapper] pilotpid: 476121
[2025-11-27 11:02:37] 2025-11-27 16:02:35,655 [wrapper] Pilot exit status: 0
[2025-11-27 11:02:37] 2025-11-27 16:02:35,735 [wrapper] pandaids: 6897394451
[2025-11-27 11:02:37] 2025-11-27 16:02:36,188 [wrapper] cleanup supervisor_pilot 1334909 476122
[2025-11-27 11:02:37] 2025-11-27 16:02:36,212 [wrapper] Test setup, not cleaning
[2025-11-27 11:02:37] 2025-11-27 16:02:36,240 [wrapper] apfmon messages muted
[2025-11-27 11:02:37] 2025-11-27 16:02:36,256 [wrapper] ==== wrapper stdout END ====
[2025-11-27 11:02:37] 2025-11-27 16:02:36,275 [wrapper] ==== wrapper stderr END ====
[2025-11-27 11:02:37]  *** Error codes and diagnostics ***
[2025-11-27 11:02:37]     "exeErrorCode": 0,
[2025-11-27 11:02:37]     "exeErrorDiag": "",
[2025-11-27 11:02:37]     "pilotErrorCode": 0,
[2025-11-27 11:02:37]     "pilotErrorDiag": "",
[2025-11-27 11:02:37]  *** Listing of results directory ***
[2025-11-27 11:02:37] total 1337804
[2025-11-27 11:02:37] -rw-r--r--. 1 boincer umatlas    576529 Nov 25 11:48 pilot3.tar.gz
[2025-11-27 11:02:37] -rw-r--r--. 1 boincer umatlas      5112 Nov 25 11:55 queuedata.json
[2025-11-27 11:02:37] -rwx------. 1 boincer umatlas     36292 Nov 25 11:57 runpilot2-wrapper.sh
[2025-11-27 11:02:37] -rw-r--r--. 1 boincer umatlas       100 Nov 25 21:59 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 11:02:37] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 25 21:59 run_atlas
[2025-11-27 11:02:37] -rw-r--r--. 1 boincer umatlas       105 Nov 25 21:59 job.xml
[2025-11-27 11:02:37] -rw-r--r--. 2 boincer umatlas 409264924 Nov 25 21:59 EVNT.47483658._002217.pool.root.1
[2025-11-27 11:02:37] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 21:59 start_atlas.sh
[2025-11-27 11:02:37] drwxrwx--x. 2 boincer umatlas      4096 Nov 25 21:59 shared
[2025-11-27 11:02:37] -rw-r--r--. 2 boincer umatlas    590109 Nov 25 21:59 input.tar.gz
[2025-11-27 11:02:37] -rw-r--r--. 1 boincer umatlas         0 Nov 25 21:59 boinc_lockfile
[2025-11-27 11:02:37] -rw-r--r--. 1 boincer umatlas      2786 Nov 25 21:59 pandaJob.out
[2025-11-27 11:02:37] -rw-------. 1 boincer umatlas        57 Nov 25 21:59 setup.sh.local
[2025-11-27 11:02:37] -rw-------. 1 boincer umatlas    991877 Nov 25 22:00 agis_schedconf.cvmfs.json
[2025-11-27 11:02:37] drwx------. 5 boincer umatlas      4096 Nov 25 22:00 pilot3
[2025-11-27 11:02:37] -rw-r--r--. 1 boincer umatlas       533 Nov 27 10:30 boinc_task_state.xml
[2025-11-27 11:02:37] -rw-r--r--. 1 boincer umatlas      6880 Nov 27 10:56 init_data.xml
[2025-11-27 11:02:37] -rw-------. 1 boincer umatlas 919351138 Nov 27 10:59 HITS.47556161._002009.pool.root.1
[2025-11-27 11:02:37] -rw-------. 1 boincer umatlas      1060 Nov 27 11:01 memory_monitor_summary.json
[2025-11-27 11:02:37] -rw-------. 1 boincer umatlas   1516240 Nov 27 11:01 agis_ddmendpoints.agis.ALL.json
[2025-11-27 11:02:37] -rw-------. 1 boincer umatlas   2939674 Nov 27 11:01 log.47556161._002009.job.log.tgz.1
[2025-11-27 11:02:37] -rw-------. 1 boincer umatlas      8626 Nov 27 11:01 heartbeat.json
[2025-11-27 11:02:37] -rw-r--r--. 1 boincer umatlas      8192 Nov 27 11:02 boinc_mmap_file
[2025-11-27 11:02:37] -rw-r--r--. 1 boincer umatlas        29 Nov 27 11:02 wrapper_checkpoint.txt
[2025-11-27 11:02:37] -rw-------. 1 boincer umatlas        95 Nov 27 11:02 pilot_heartbeat.json
[2025-11-27 11:02:37] -rw-------. 1 boincer umatlas       822 Nov 27 11:02 pilotlog.txt
[2025-11-27 11:02:37] -rw-------. 1 boincer umatlas  15747464 Nov 27 11:02 log.47556161._002009.job.log.1
[2025-11-27 11:02:37] -rw-------. 1 boincer umatlas       353 Nov 27 11:02 output.list
[2025-11-27 11:02:37] -rw-r--r--. 1 boincer umatlas       620 Nov 27 11:02 runtime_log
[2025-11-27 11:02:37] -rw-------. 1 boincer umatlas  18708480 Nov 27 11:02 result.tar.gz
[2025-11-27 11:02:37] -rw-r--r--. 1 boincer umatlas      9354 Nov 27 11:02 runtime_log.err
[2025-11-27 11:02:37] -rw-------. 1 boincer umatlas       665 Nov 27 11:02 8etKDm7WBi8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmkaJKDmBaR4hm.diag
[2025-11-27 11:02:37] -rw-r--r--. 1 boincer umatlas     21642 Nov 27 11:02 stderr.txt
[2025-11-27 11:02:37] HITS file was successfully produced:
[2025-11-27 11:02:37] -rw-------. 1 boincer umatlas 919351138 Nov 27 10:59 shared/HITS.pool.root.1
[2025-11-27 11:02:37]  *** Contents of shared directory: ***
[2025-11-27 11:02:37] total 1316356
[2025-11-27 11:02:37] -rw-r--r--. 2 boincer umatlas 409264924 Nov 25 21:59 ATLAS.root_0
[2025-11-27 11:02:37] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 21:59 start_atlas.sh
[2025-11-27 11:02:37] -rw-r--r--. 2 boincer umatlas    590109 Nov 25 21:59 input.tar.gz
[2025-11-27 11:02:37] -rw-------. 1 boincer umatlas 919351138 Nov 27 10:59 HITS.pool.root.1
[2025-11-27 11:02:37] -rw-------. 1 boincer umatlas  18708480 Nov 27 11:02 result.tar.gz
11:02:38 (468977): run_atlas exited; CPU time 277641.697068
11:02:38 (468977): called boinc_finish(0)

</stderr_txt>
]]>

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