Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
19:18:07 (2834561): wrapper (7.7.26015): starting
19:18:07 (2834561): wrapper: running run_atlas (--nthreads 12)
[2025-11-25 19:18:07] Arguments: --nthreads 12
[2025-11-25 19:18:07] Threads: 12
[2025-11-25 19:18:07] Checking for CVMFS
[2025-11-25 19:18:07] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 19:18:07] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 19:18:07] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 19:18:07] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 19:18:07] 2.11.5.0 3636299 27549 164844 153305 0 503 32805960 45568000 43505 130560 0 283828103 99.811 153524449 24843 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.162:3129 1
[2025-11-25 19:18:07] CVMFS is ok
[2025-11-25 19:18:07] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 19:18:07] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 19:18:07] Further information can be found at the LHC@home message board.
[2025-11-25 19:18:07] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 19:18:07] Checking for apptainer binary...
[2025-11-25 19:18:07] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 19:18:07] Running /usr/bin/apptainer --version
[2025-11-25 19:18:07] apptainer version 1.4.1-1.el9
[2025-11-25 19:18:07] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 19:18:08] wns0045.triumf.lcg
[2025-11-25 19:18:08] apptainer works
[2025-11-25 19:18:08] Set ATHENA_PROC_NUMBER=12
[2025-11-25 19:18:08] Set ATHENA_CORE_NUMBER=12
[2025-11-25 19:18:08] Starting ATLAS job with PandaID=6897394429
[2025-11-25 19:18:08] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 19:23:47]  *** The last 200 lines of the pilot log: ***
[2025-11-25 19:23:47] 2025-11-26 03:23:13,379 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-25 19:23:47] 2025-11-26 03:23:13,380 | WARNING  | wrong length of table data, x=[1764127158.0, 1764127219.0], y=[1430.0, 860929.0] (must be same and length>=4)
[2025-11-25 19:23:47] 2025-11-26 03:23:13,380 | INFO     | could have reported an average CPU frequency of 2777 MHz (4 samples)
[2025-11-25 19:23:47] 2025-11-26 03:23:13,380 | INFO     | ..............................
[2025-11-25 19:23:47] 2025-11-26 03:23:13,381 | INFO     | . Timing measurements:
[2025-11-25 19:23:47] 2025-11-26 03:23:13,381 | INFO     | . get job = 0 s
[2025-11-25 19:23:47] 2025-11-26 03:23:13,381 | INFO     | . initial setup = 3 s
[2025-11-25 19:23:47] 2025-11-26 03:23:13,381 | INFO     | . payload setup = 12 s
[2025-11-25 19:23:47] 2025-11-26 03:23:13,381 | INFO     | . stage-in = 0 s
[2025-11-25 19:23:47] 2025-11-26 03:23:13,381 | INFO     | . payload execution = 112 s
[2025-11-25 19:23:47] 2025-11-26 03:23:13,381 | INFO     | . stage-out = 0 s
[2025-11-25 19:23:47] 2025-11-26 03:23:13,381 | INFO     | . log creation = 0 s
[2025-11-25 19:23:47] 2025-11-26 03:23:13,381 | INFO     | ..............................
[2025-11-25 19:23:47] 2025-11-26 03:23:13,381 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-25 19:23:47] 2025-11-26 03:23:13,381 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6897394429/pilotlog.txt
[2025-11-25 19:23:47] 2025-11-26 03:23:13,395 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-11-25 19:23:47] - Log from pilotlog.txt -
[2025-11-25 19:23:47] 2025-11-26 03:23:13,379 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6897394429/memory_monitor_summary.json (trf name=prmon)
[2025-11-25 19:23:47] 2025-11-26 03:23:13,379 | INFO     | extracted standard info from prmon json
[2025-11-25 19:23:47] 2025-11-26 03:23:13,379 | INFO     | extracted standard memory fields from prmon json
[2025-11-25 19:23:47] 2025-11-26 03:23:13,379 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-25 19:23:47] 2025-11-26 03:23:13,379 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-25 19:23:47] 2025-11-26 03:23:13,379 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-25 19:23:47] 2025-11-26 03:23:13,380 | WARNING  | wrong length of table data, x=[1764127158.0, 1764127219.0], y=[1430.0, 860929.0] (must be same and length>=4)
[2025-11-25 19:23:47] 2025-11-26 03:23:13,380 | INFO     | could have reported an average CPU frequency of 2777 MHz (4 samples)
[2025-11-25 19:23:47] 2025-11-26 03:23:13,380 | INFO     | ..............................
[2025-11-25 19:23:47] 2025-11-26 03:23:13,381 | INFO     | . Timing measurements:
[2025-11-25 19:23:47] 2025-11-26 03:23:13,381 | INFO     | . get job = 0 s
[2025-11-25 19:23:47] 2025-11-26 03:23:13,381 | INFO     | . initial setup = 3 s
[2025-11-25 19:23:47] 2025-11-26 03:23:13,381 | INFO     | . payload setup = 12 s
[2025-11-25 19:23:47] 2025-11-26 03:23:13,381 | INFO     | . stage-in = 0 s
[2025-11-25 19:23:47] 2025-11-26 03:23:13,381 | INFO     | . payload execution = 112 s
[2025-11-25 19:23:47] 2025-11-26 03:23:13,381 | INFO     | . stage-out = 0 s
[2025-11-25 19:23:47] 2025-11-26 03:23:13,381 | INFO     | . log creation = 0 s
[2025-11-25 19:23:47] 2025-11-26 03:23:13,381 | INFO     | ..............................
[2025-11-25 19:23:47] 2025-11-26 03:23:13,381 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-25 19:23:47] 2025-11-26 03:23:13,381 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6897394429/pilotlog.txt
[2025-11-25 19:23:47] 2025-11-26 03:23:13,395 | WARNING  | 
[2025-11-25 19:23:47] [begin log extracts]
[2025-11-25 19:23:47] - Log from pilotlog.txt -
[2025-11-25 19:23:47] 2025-11-26 03:23:13,379 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6897394429/memory_monitor_summary.json (trf name=prmon)
[2025-11-25 19:23:47] 2025-11-26 03:23:13,379 | INFO     | extracted standard info from prmon json
[2025-11-25 19:23:47] 2025-11-26 03:23:13,379 | INFO     | extracted standard memory fields from prmon json
[2025-11-25 19:23:47] 2025-11-26 03:23:13,379 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-25 19:23:47] 2025-11-26 03:23:13,379 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-25 19:23:47] 2025-11-26 03:23:13,379 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-25 19:23:47] 2025-11-26 03:23:13,380 | WARNING  | wrong length of table data, x=[1764127158.0, 1764127219.0], y=[1430.0, 860929.0] (must be same and length>=4)
[2025-11-25 19:23:47] 2025-11-26 03:23:13,380 | INFO     | could have reported an average CPU frequency of 2777 MHz (4 samples)
[2025-11-25 19:23:47] 2025-11-26 03:23:13,380 | INFO     | ..............................
[2025-11-25 19:23:47] 2025-11-26 03:23:13,381 | INFO     | . Timing measurements:
[2025-11-25 19:23:47] 2025-11-26 03:23:13,381 | INFO     | . get job = 0 s
[2025-11-25 19:23:47] 2025-11-26 03:23:13,381 | INFO     | . initial setup = 3 s
[2025-11-25 19:23:47] 2025-11-26 03:23:13,381 | INFO     | . payload setup = 12 s
[2025-11-25 19:23:47] 2025-11-26 03:23:13,381 | INFO     | . stage-in = 0 s
[2025-11-25 19:23:47] 2025-11-26 03:23:13,381 | INFO     | . payload execution = 112 s
[2025-11-25 19:23:47] 2025-11-26 03:23:13,381 | INFO     | . stage-out = 0 s
[2025-11-25 19:23:47] 2025-11-26 03:23:13,381 | INFO     | . log creation = 0 s
[2025-11-25 19:23:47] 2025-11-26 03:23:13,381 | INFO     | ..............................
[2025-11-25 19:23:47] 2025-11-26 03:23:13,381 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-25 19:23:47] 2025-11-26 03:23:13,381 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6897394429/pilotlog.txt
[2025-11-25 19:23:47] [end log extracts]
[2025-11-25 19:23:47] 2025-11-26 03:23:13,396 | WARNING  | pilotErrorCodes = [1305, 1165] (will report primary/first error code)
[2025-11-25 19:23:47] 2025-11-26 03:23:13,396 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2025-11-25 19:23:47] 2025-11-26 03:23:13,519 | INFO     | 
[2025-11-25 19:23:47] 2025-11-26 03:23:13,519 | INFO     | job summary report
[2025-11-25 19:23:47] 2025-11-26 03:23:13,519 | INFO     | --------------------------------------------------
[2025-11-25 19:23:47] 2025-11-26 03:23:13,519 | INFO     | PanDA job id: 6897394429
[2025-11-25 19:23:47] 2025-11-26 03:23:13,519 | INFO     | task id: 47556173
[2025-11-25 19:23:47] 2025-11-26 03:23:13,519 | INFO     | error 1/2: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-11-25 19:20:52,759 CRITICAL Transform executor raised TransformValidationExceptio
[2025-11-25 19:23:47] 2025-11-26 03:23:13,519 | INFO     | error 2/2: 1165: Local output file is missing
[2025-11-25 19:23:47] 2025-11-26 03:23:13,519 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-25 19:23:47] 2025-11-26 03:23:13,519 | INFO     | pilot state: failed 
[2025-11-25 19:23:47] 2025-11-26 03:23:13,519 | INFO     | transexitcode: 65
[2025-11-25 19:23:47] 2025-11-26 03:23:13,519 | INFO     | exeerrorcode: 65
[2025-11-25 19:23:47] 2025-11-26 03:23:13,519 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFL
[2025-11-25 19:23:47] 2025-11-26 03:23:13,519 | INFO     | exitcode: 65
[2025-11-25 19:23:47] 2025-11-26 03:23:13,519 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 
[2025-11-25 19:23:47] 2025-11-26 03:23:13,519 | INFO     | cpuconsumptiontime: 41 s
[2025-11-25 19:23:47] 2025-11-26 03:23:13,519 | INFO     | nevents: 0
[2025-11-25 19:23:47] 2025-11-26 03:23:13,519 | INFO     | neventsw: 0
[2025-11-25 19:23:47] 2025-11-26 03:23:13,520 | INFO     | pid: 2846301
[2025-11-25 19:23:47] 2025-11-26 03:23:13,520 | INFO     | pgrp: 2846301
[2025-11-25 19:23:47] 2025-11-26 03:23:13,520 | INFO     | corecount: 12
[2025-11-25 19:23:47] 2025-11-26 03:23:13,520 | INFO     | event service: False
[2025-11-25 19:23:47] 2025-11-26 03:23:13,520 | INFO     | sizes: {0: 2284260, 11: 2284550, 128: 2310054, 129: 2314344, 132: 2314400, 261: 2314622}
[2025-11-25 19:23:47] 2025-11-26 03:23:13,520 | INFO     | --------------------------------------------------
[2025-11-25 19:23:47] 2025-11-26 03:23:13,520 | INFO     | 
[2025-11-25 19:23:47] 2025-11-26 03:23:13,520 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2025-11-25 19:23:47] 2025-11-26 03:23:13,538 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-25 19:23:47] 2025-11-26 03:23:13,539 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-25 19:23:47] 2025-11-26 03:23:13,539 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-25 19:23:47] 2025-11-26 03:23:13,539 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-25 19:23:47] 2025-11-26 03:23:13,539 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-25 19:23:47] 2025-11-26 03:23:13,539 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-25 19:23:47] 2025-11-26 03:23:13,539 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-25 19:23:47] 2025-11-26 03:23:13,539 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-25 19:23:47] 2025-11-26 03:23:13,539 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-25 19:23:47] 2025-11-26 03:23:13,539 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-25 19:23:47] 2025-11-26 03:23:13,539 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-25 19:23:47] 2025-11-26 03:23:13,539 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-25 19:23:47] 2025-11-26 03:23:13,539 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-25 19:23:47] 2025-11-26 03:23:13,539 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-25 19:23:47] 2025-11-26 03:23:13,539 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-25 19:23:47] 2025-11-26 03:23:13,539 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-25 19:23:47] 2025-11-26 03:23:13,539 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-25 19:23:47] 2025-11-26 03:23:13,539 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-25 19:23:47] 2025-11-26 03:23:13,540 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-25 19:23:47] 2025-11-26 03:23:13,540 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-25 19:23:47] 2025-11-26 03:23:13,540 | INFO     | job 6897394429 has completed (purged errors)
[2025-11-25 19:23:47] 2025-11-26 03:23:13,540 | INFO     | overall cleanup function is called
[2025-11-25 19:23:47] 2025-11-26 03:23:14,548 | INFO     | --- collectZombieJob: --- 10, [2846301]
[2025-11-25 19:23:47] 2025-11-26 03:23:14,548 | INFO     | zombie collector waiting for pid 2846301
[2025-11-25 19:23:47] 2025-11-26 03:23:14,548 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-25 19:23:47] 2025-11-26 03:23:14,548 | INFO     | collected zombie processes
[2025-11-25 19:23:47] 2025-11-26 03:23:14,548 | INFO     | will attempt to kill all subprocesses of pid=2846301
[2025-11-25 19:23:47] 2025-11-26 03:23:14,970 | INFO     | process IDs to be killed: [2846301] (in reverse order)
[2025-11-25 19:23:47] 2025-11-26 03:23:15,141 | WARNING  | found no corresponding commands to process id(s)
[2025-11-25 19:23:47] 2025-11-26 03:23:15,141 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-25 19:23:47] 2025-11-26 03:23:15,158 | INFO     | did not find any defunct processes belonging to 2846301
[2025-11-25 19:23:47] 2025-11-26 03:23:15,176 | INFO     | did not find any defunct processes belonging to 2846301
[2025-11-25 19:23:47] 2025-11-26 03:23:15,177 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-25 19:23:47] 2025-11-26 03:23:15,177 | INFO     | ready for new job
[2025-11-25 19:23:47] 2025-11-26 03:23:15,177 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-25 19:23:47] 2025-11-26 03:23:15,178 | INFO     | ***************************************
[2025-11-25 19:23:47] 2025-11-26 03:23:15,178 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-25 19:23:47] 2025-11-26 03:23:15,178 | INFO     | ***************************************
[2025-11-25 19:23:47] 2025-11-26 03:23:15,178 | INFO     | 
[2025-11-25 19:23:47] 2025-11-26 03:23:15,182 | INFO     | architecture information:
[2025-11-25 19:23:47] 2025-11-26 03:23:15,183 | INFO     | executing command: cat /etc/os-release
[2025-11-25 19:23:47] 2025-11-26 03:23:15,216 | INFO     | cat /etc/os-release:
[2025-11-25 19:23:47] NAME="CentOS Linux"
[2025-11-25 19:23:47] VERSION="7 (Core)"
[2025-11-25 19:23:47] ID="centos"
[2025-11-25 19:23:47] ID_LIKE="rhel fedora"
[2025-11-25 19:23:47] VERSION_ID="7"
[2025-11-25 19:23:47] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-25 19:23:47] ANSI_COLOR="0;31"
[2025-11-25 19:23:47] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-25 19:23:47] HOME_URL="https://www.centos.org/"
[2025-11-25 19:23:47] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-25 19:23:47] 
[2025-11-25 19:23:47] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-25 19:23:47] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-25 19:23:47] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-25 19:23:47] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-25 19:23:47] 
[2025-11-25 19:23:47] 2025-11-26 03:23:15,218 | INFO     | ***************************************
[2025-11-25 19:23:47] 2025-11-26 03:23:15,721 | INFO     | executing command: df -mP /home/boinc/slots/0
[2025-11-25 19:23:47] 2025-11-26 03:23:15,748 | INFO     | sufficient remaining disk space (954136002560 B)
[2025-11-25 19:23:47] 2025-11-26 03:23:15,748 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-25 19:23:47] 2025-11-26 03:23:15,749 | INFO     | current server update state: UPDATING_FINAL
[2025-11-25 19:23:47] 2025-11-26 03:23:15,749 | INFO     | update_server=False
[2025-11-25 19:23:47] 2025-11-26 03:23:15,749 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 19:23:47] 2025-11-26 03:23:16,203 | INFO     | all data control threads have been joined
[2025-11-25 19:23:47] 2025-11-26 03:23:16,247 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 19:23:47] 2025-11-26 03:23:16,495 | INFO     | all payload control threads have been joined
[2025-11-25 19:23:47] 2025-11-26 03:23:16,498 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 19:23:47] 2025-11-26 03:23:16,498 | INFO     | aborting loop
[2025-11-25 19:23:47] 2025-11-26 03:23:16,755 | INFO     | [job] retrieve thread has finished
[2025-11-25 19:23:47] 2025-11-26 03:23:16,772 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 19:23:47] 2025-11-26 03:23:16,802 | INFO     | [payload] validate_post thread has finished
[2025-11-25 19:23:47] 2025-11-26 03:23:16,859 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 19:23:47] 2025-11-26 03:23:16,977 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 19:23:47] 2025-11-26 03:23:17,209 | INFO     | [data] control thread has finished
[2025-11-25 19:23:47] 2025-11-26 03:23:17,267 | INFO     | all job control threads have been joined
[2025-11-25 19:23:47] 2025-11-26 03:23:17,502 | INFO     | [payload] control thread has finished
[2025-11-25 19:23:47] 2025-11-26 03:23:17,504 | INFO     | [job] job monitor thread has finished
[2025-11-25 19:23:47] 2025-11-26 03:23:17,521 | INFO     | [job] validate thread has finished
[2025-11-25 19:23:47] 2025-11-26 03:23:17,896 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 19:23:47] 2025-11-26 03:23:18,014 | INFO     | [data] copytool_in thread has finished
[2025-11-25 19:23:47] 2025-11-26 03:23:18,123 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 19:23:47] 2025-11-26 03:23:18,181 | INFO     | [payload] failed_post thread has finished
[2025-11-25 19:23:47] 2025-11-26 03:23:18,274 | INFO     | [job] control thread has finished
[2025-11-25 19:23:47] 2025-11-26 03:23:18,464 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 19:23:47] 2025-11-26 03:23:18,866 | INFO     | [data] copytool_out thread has finished
[2025-11-25 19:23:47] 2025-11-26 03:23:19,470 | INFO     | [job] queue monitor thread has finished
[2025-11-25 19:23:47] 2025-11-26 03:23:20,256 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 19:23:47] 2025-11-26 03:23:28,444 | INFO     | [monitor] cgroup control has ended
[2025-11-25 19:23:47] 2025-11-26 03:23:30,527 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139851718100800)>', '<ExcThread(monitor, started 139851397568256)>']
[2025-11-25 19:23:47] 2025-11-26 03:23:35,553 | INFO     | all workflow threads have been joined
[2025-11-25 19:23:47] 2025-11-26 03:23:35,553 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 19:23:47] 2025-11-26 03:23:35,553 | INFO     | traces error code: 0
[2025-11-25 19:23:47] 2025-11-26 03:23:35,553 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 19:23:47] 2025-11-26 03:23:46,593 | INFO     | PID=2839405 has CPU usage=1.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-25 19:23:47] 2025-11-26 03:23:46,593 | INFO     | .. there are 47 such processes running
[2025-11-25 19:23:47] 2025-11-26 03:23:46,594 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 19:23:47] 2025-11-26 03:23:46,594 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 19:23:47] 2025-11-26 03:23:46,594 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 19:23:47] 2025-11-26 03:23:46,594 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 19:23:47] 2025-11-26 03:23:46,594 | INFO     | [monitor] control thread has ended
[2025-11-25 19:23:47] 2025-11-26 03:23:47,082 [wrapper] ==== pilot stdout END ====
[2025-11-25 19:23:47] 2025-11-26 03:23:47,088 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 19:23:47] 2025-11-26 03:23:47,090 [wrapper] pilotpid: 2839405
[2025-11-25 19:23:47] 2025-11-26 03:23:47,091 [wrapper] Pilot exit status: 0
[2025-11-25 19:23:47] 2025-11-26 03:23:47,118 [wrapper] pandaids: 6897394429
[2025-11-25 19:23:47] 2025-11-26 03:23:47,208 [wrapper] cleanup supervisor_pilot 2839411 2839406
[2025-11-25 19:23:47] 2025-11-26 03:23:47,218 [wrapper] Test setup, not cleaning
[2025-11-25 19:23:47] 2025-11-26 03:23:47,223 [wrapper] apfmon messages muted
[2025-11-25 19:23:47] 2025-11-26 03:23:47,226 [wrapper] ==== wrapper stdout END ====
[2025-11-25 19:23:47] 2025-11-26 03:23:47,228 [wrapper] ==== wrapper stderr END ====
[2025-11-25 19:23:47]  *** Error codes and diagnostics ***
[2025-11-25 19:23:47]     "exeErrorCode": 65,
[2025-11-25 19:23:47]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 cannot be opened - STOP\"",
[2025-11-25 19:23:47]     "pilotErrorCode": 1305,
[2025-11-25 19:23:47]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 canno",
[2025-11-25 19:23:47]  *** Listing of results directory ***
[2025-11-25 19:23:47] total 406664
[2025-11-25 19:23:47] -rw-r--r--. 1 boinc boinc    576529 Nov 25 08:48 pilot3.tar.gz
[2025-11-25 19:23:47] -rw-r--r--. 1 boinc boinc      5112 Nov 25 08:55 queuedata.json
[2025-11-25 19:23:47] -rwx------. 1 boinc boinc     36292 Nov 25 08:57 runpilot2-wrapper.sh
[2025-11-25 19:23:47] -rw-r--r--. 1 boinc boinc       100 Nov 25 19:18 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 19:23:47] -rwxr-xr-x. 1 boinc boinc      7986 Nov 25 19:18 run_atlas
[2025-11-25 19:23:47] -rw-r--r--. 1 boinc boinc       105 Nov 25 19:18 job.xml
[2025-11-25 19:23:47] -rw-r--r--. 1 boinc boinc      6594 Nov 25 19:18 init_data.xml
[2025-11-25 19:23:47] -rw-r--r--. 2 boinc boinc 412208815 Nov 25 19:18 EVNT.47483658._003096.pool.root.1
[2025-11-25 19:23:47] -rw-r--r--. 2 boinc boinc     15847 Nov 25 19:18 start_atlas.sh
[2025-11-25 19:23:47] drwxrwx--x. 2 boinc boinc      4096 Nov 25 19:18 shared
[2025-11-25 19:23:47] -rw-r--r--. 2 boinc boinc    590105 Nov 25 19:18 input.tar.gz
[2025-11-25 19:23:47] -rw-r--r--. 1 boinc boinc         0 Nov 25 19:18 boinc_lockfile
[2025-11-25 19:23:47] -rw-r--r--. 1 boinc boinc      2785 Nov 25 19:18 pandaJob.out
[2025-11-25 19:23:47] -rw-------. 1 boinc boinc    991877 Nov 25 19:18 agis_schedconf.cvmfs.json
[2025-11-25 19:23:47] -rw-------. 1 boinc boinc   1516240 Nov 25 19:18 agis_ddmendpoints.agis.ALL.json
[2025-11-25 19:23:47] drwx------. 5 boinc boinc      4096 Nov 25 19:18 pilot3
[2025-11-25 19:23:47] -rw-r--r--. 1 boinc boinc       524 Nov 25 19:20 boinc_task_state.xml
[2025-11-25 19:23:47] -rw-------. 1 boinc boinc       999 Nov 25 19:20 memory_monitor_summary.json
[2025-11-25 19:23:47] -rw-------. 1 boinc boinc     48320 Nov 25 19:21 log.47556173._000783.job.log.tgz.1
[2025-11-25 19:23:47] -rw-------. 1 boinc boinc     10339 Nov 25 19:23 heartbeat.json
[2025-11-25 19:23:47] -rw-r--r--. 1 boinc boinc      8192 Nov 25 19:23 boinc_mmap_file
[2025-11-25 19:23:47] -rw-r--r--. 1 boinc boinc        23 Nov 25 19:23 wrapper_checkpoint.txt
[2025-11-25 19:23:47] -rw-------. 1 boinc boinc       823 Nov 25 19:23 pilotlog.txt
[2025-11-25 19:23:47] -rw-------. 1 boinc boinc        95 Nov 25 19:23 pilot_heartbeat.json
[2025-11-25 19:23:47] -rw-------. 1 boinc boinc    103763 Nov 25 19:23 log.47556173._000783.job.log.1
[2025-11-25 19:23:47] -rw-------. 1 boinc boinc       186 Nov 25 19:23 output.list
[2025-11-25 19:23:47] -rw-r--r--. 1 boinc boinc       620 Nov 25 19:23 runtime_log
[2025-11-25 19:23:47] -rw-------. 1 boinc boinc    174080 Nov 25 19:23 result.tar.gz
[2025-11-25 19:23:47] -rw-r--r--. 1 boinc boinc      8636 Nov 25 19:23 runtime_log.err
[2025-11-25 19:23:47] -rw-------. 1 boinc boinc       647 Nov 25 19:23 PchKDm7WBi8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmbaJKDmFNmzlm.diag
[2025-11-25 19:23:47] -rw-r--r--. 1 boinc boinc     22462 Nov 25 19:23 stderr.txt
[2025-11-25 19:23:47] No HITS result produced
[2025-11-25 19:23:47]  *** Contents of shared directory: ***
[2025-11-25 19:23:47] total 403320
[2025-11-25 19:23:47] -rw-r--r--. 2 boinc boinc 412208815 Nov 25 19:18 ATLAS.root_0
[2025-11-25 19:23:47] -rw-r--r--. 2 boinc boinc     15847 Nov 25 19:18 start_atlas.sh
[2025-11-25 19:23:47] -rw-r--r--. 2 boinc boinc    590105 Nov 25 19:18 input.tar.gz
[2025-11-25 19:23:47] -rw-------. 1 boinc boinc    174080 Nov 25 19:23 result.tar.gz
19:23:48 (2834561): run_atlas exited; CPU time 45.402047
19:23:48 (2834561): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN