Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
19:03:43 (2884371): wrapper (7.7.26015): starting
19:03:43 (2884371): wrapper: running run_atlas (--nthreads 8)
[2025-11-25 19:03:43] Arguments: --nthreads 8
[2025-11-25 19:03:43] Threads: 8
[2025-11-25 19:03:43] Checking for CVMFS
[2025-11-25 19:03:44] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 19:03:44] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 19:03:44] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 19:03:44] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 19:03:44] 2.11.3.0 3082052 27820 200244 153305 1 544 43241051 45568000 22730 130560 0 190005989 99.803 114152736 23017 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.162:3129 1
[2025-11-25 19:03:44] CVMFS is ok
[2025-11-25 19:03:44] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 19:03:44] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 19:03:44] Further information can be found at the LHC@home message board.
[2025-11-25 19:03:44] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 19:03:44] Checking for apptainer binary...
[2025-11-25 19:03:44] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 19:03:44] Running /usr/bin/apptainer --version
[2025-11-25 19:03:44] apptainer version 1.4.1-1.el9
[2025-11-25 19:03:44] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 19:03:44] wns0019.triumf.lcg
[2025-11-25 19:03:44] apptainer works
[2025-11-25 19:03:44] Set ATHENA_PROC_NUMBER=8
[2025-11-25 19:03:44] Set ATHENA_CORE_NUMBER=8
[2025-11-25 19:03:44] Starting ATLAS job with PandaID=6897372749
[2025-11-25 19:03:44] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 19:10:04]  *** The last 200 lines of the pilot log: ***
[2025-11-25 19:10:04] 2025-11-26 03:09:02,748 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-25 19:10:04] 2025-11-26 03:09:02,749 | WARNING  | wrong length of table data, x=[1764126269.0, 1764126330.0, 1764126391.0], y=[1406.0, 724809.0, 536324.0] (must be same and length>=4)
[2025-11-25 19:10:04] 2025-11-26 03:09:02,750 | INFO     | could have reported an average CPU frequency of 2095 MHz (4 samples)
[2025-11-25 19:10:04] 2025-11-26 03:09:02,750 | INFO     | ..............................
[2025-11-25 19:10:04] 2025-11-26 03:09:02,750 | INFO     | . Timing measurements:
[2025-11-25 19:10:04] 2025-11-26 03:09:02,750 | INFO     | . get job = 0 s
[2025-11-25 19:10:04] 2025-11-26 03:09:02,750 | INFO     | . initial setup = 2 s
[2025-11-25 19:10:04] 2025-11-26 03:09:02,750 | INFO     | . payload setup = 7 s
[2025-11-25 19:10:04] 2025-11-26 03:09:02,750 | INFO     | . stage-in = 0 s
[2025-11-25 19:10:04] 2025-11-26 03:09:02,750 | INFO     | . payload execution = 151 s
[2025-11-25 19:10:04] 2025-11-26 03:09:02,750 | INFO     | . stage-out = 0 s
[2025-11-25 19:10:04] 2025-11-26 03:09:02,750 | INFO     | . log creation = 0 s
[2025-11-25 19:10:04] 2025-11-26 03:09:02,751 | INFO     | ..............................
[2025-11-25 19:10:04] 2025-11-26 03:09:02,751 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-25 19:10:04] 2025-11-26 03:09:02,751 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6897372749/pilotlog.txt
[2025-11-25 19:10:04] 2025-11-26 03:09:02,761 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-11-25 19:10:04] - Log from pilotlog.txt -
[2025-11-25 19:10:04] 2025-11-26 03:09:02,747 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6897372749/memory_monitor_summary.json (trf name=prmon)
[2025-11-25 19:10:04] 2025-11-26 03:09:02,748 | INFO     | extracted standard info from prmon json
[2025-11-25 19:10:04] 2025-11-26 03:09:02,748 | INFO     | extracted standard memory fields from prmon json
[2025-11-25 19:10:04] 2025-11-26 03:09:02,748 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-25 19:10:04] 2025-11-26 03:09:02,748 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-25 19:10:04] 2025-11-26 03:09:02,748 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-25 19:10:04] 2025-11-26 03:09:02,749 | WARNING  | wrong length of table data, x=[1764126269.0, 1764126330.0, 1764126391.0], y=[1406.0, 724809.0, 536324.0] (must be same and length>=4)
[2025-11-25 19:10:04] 2025-11-26 03:09:02,750 | INFO     | could have reported an average CPU frequency of 2095 MHz (4 samples)
[2025-11-25 19:10:04] 2025-11-26 03:09:02,750 | INFO     | ..............................
[2025-11-25 19:10:04] 2025-11-26 03:09:02,750 | INFO     | . Timing measurements:
[2025-11-25 19:10:04] 2025-11-26 03:09:02,750 | INFO     | . get job = 0 s
[2025-11-25 19:10:04] 2025-11-26 03:09:02,750 | INFO     | . initial setup = 2 s
[2025-11-25 19:10:04] 2025-11-26 03:09:02,750 | INFO     | . payload setup = 7 s
[2025-11-25 19:10:04] 2025-11-26 03:09:02,750 | INFO     | . stage-in = 0 s
[2025-11-25 19:10:04] 2025-11-26 03:09:02,750 | INFO     | . payload execution = 151 s
[2025-11-25 19:10:04] 2025-11-26 03:09:02,750 | INFO     | . stage-out = 0 s
[2025-11-25 19:10:04] 2025-11-26 03:09:02,750 | INFO     | . log creation = 0 s
[2025-11-25 19:10:04] 2025-11-26 03:09:02,751 | INFO     | ..............................
[2025-11-25 19:10:04] 2025-11-26 03:09:02,751 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-25 19:10:04] 2025-11-26 03:09:02,751 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6897372749/pilotlog.txt
[2025-11-25 19:10:04] 2025-11-26 03:09:02,762 | WARNING  | 
[2025-11-25 19:10:04] [begin log extracts]
[2025-11-25 19:10:04] - Log from pilotlog.txt -
[2025-11-25 19:10:04] 2025-11-26 03:09:02,747 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6897372749/memory_monitor_summary.json (trf name=prmon)
[2025-11-25 19:10:04] 2025-11-26 03:09:02,748 | INFO     | extracted standard info from prmon json
[2025-11-25 19:10:04] 2025-11-26 03:09:02,748 | INFO     | extracted standard memory fields from prmon json
[2025-11-25 19:10:04] 2025-11-26 03:09:02,748 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-25 19:10:04] 2025-11-26 03:09:02,748 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-25 19:10:04] 2025-11-26 03:09:02,748 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-25 19:10:04] 2025-11-26 03:09:02,749 | WARNING  | wrong length of table data, x=[1764126269.0, 1764126330.0, 1764126391.0], y=[1406.0, 724809.0, 536324.0] (must be same and length>=4)
[2025-11-25 19:10:04] 2025-11-26 03:09:02,750 | INFO     | could have reported an average CPU frequency of 2095 MHz (4 samples)
[2025-11-25 19:10:04] 2025-11-26 03:09:02,750 | INFO     | ..............................
[2025-11-25 19:10:04] 2025-11-26 03:09:02,750 | INFO     | . Timing measurements:
[2025-11-25 19:10:04] 2025-11-26 03:09:02,750 | INFO     | . get job = 0 s
[2025-11-25 19:10:04] 2025-11-26 03:09:02,750 | INFO     | . initial setup = 2 s
[2025-11-25 19:10:04] 2025-11-26 03:09:02,750 | INFO     | . payload setup = 7 s
[2025-11-25 19:10:04] 2025-11-26 03:09:02,750 | INFO     | . stage-in = 0 s
[2025-11-25 19:10:04] 2025-11-26 03:09:02,750 | INFO     | . payload execution = 151 s
[2025-11-25 19:10:04] 2025-11-26 03:09:02,750 | INFO     | . stage-out = 0 s
[2025-11-25 19:10:04] 2025-11-26 03:09:02,750 | INFO     | . log creation = 0 s
[2025-11-25 19:10:04] 2025-11-26 03:09:02,751 | INFO     | ..............................
[2025-11-25 19:10:04] 2025-11-26 03:09:02,751 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-25 19:10:04] 2025-11-26 03:09:02,751 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6897372749/pilotlog.txt
[2025-11-25 19:10:04] [end log extracts]
[2025-11-25 19:10:04] 2025-11-26 03:09:02,762 | WARNING  | pilotErrorCodes = [1305, 1165] (will report primary/first error code)
[2025-11-25 19:10:04] 2025-11-26 03:09:02,762 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2025-11-25 19:10:04] 2025-11-26 03:09:02,830 | INFO     | 
[2025-11-25 19:10:04] 2025-11-26 03:09:02,830 | INFO     | job summary report
[2025-11-25 19:10:04] 2025-11-26 03:09:02,830 | INFO     | --------------------------------------------------
[2025-11-25 19:10:04] 2025-11-26 03:09:02,830 | INFO     | PanDA job id: 6897372749
[2025-11-25 19:10:04] 2025-11-26 03:09:02,830 | INFO     | task id: 47556173
[2025-11-25 19:10:04] 2025-11-26 03:09:02,830 | INFO     | error 1/2: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-11-25 19:06:49,723 CRITICAL Transform executor raised TransformValidationExceptio
[2025-11-25 19:10:04] 2025-11-26 03:09:02,830 | INFO     | error 2/2: 1165: Local output file is missing
[2025-11-25 19:10:04] 2025-11-26 03:09:02,830 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-25 19:10:04] 2025-11-26 03:09:02,830 | INFO     | pilot state: failed 
[2025-11-25 19:10:04] 2025-11-26 03:09:02,830 | INFO     | transexitcode: 65
[2025-11-25 19:10:04] 2025-11-26 03:09:02,830 | INFO     | exeerrorcode: 65
[2025-11-25 19:10:04] 2025-11-26 03:09:02,831 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFL
[2025-11-25 19:10:04] 2025-11-26 03:09:02,831 | INFO     | exitcode: 65
[2025-11-25 19:10:04] 2025-11-26 03:09:02,831 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 
[2025-11-25 19:10:04] 2025-11-26 03:09:02,831 | INFO     | cpuconsumptiontime: 48 s
[2025-11-25 19:10:04] 2025-11-26 03:09:02,831 | INFO     | nevents: 0
[2025-11-25 19:10:04] 2025-11-26 03:09:02,831 | INFO     | neventsw: 0
[2025-11-25 19:10:04] 2025-11-26 03:09:02,831 | INFO     | pid: 2894630
[2025-11-25 19:10:04] 2025-11-26 03:09:02,831 | INFO     | pgrp: 2894630
[2025-11-25 19:10:04] 2025-11-26 03:09:02,831 | INFO     | corecount: 8
[2025-11-25 19:10:04] 2025-11-26 03:09:02,831 | INFO     | event service: False
[2025-11-25 19:10:04] 2025-11-26 03:09:02,831 | INFO     | sizes: {0: 2284089, 1: 2284288, 6: 2284550, 12: 2284578, 163: 2310021, 164: 2314443, 167: 2314443, 289: 2314637}
[2025-11-25 19:10:04] 2025-11-26 03:09:02,831 | INFO     | --------------------------------------------------
[2025-11-25 19:10:04] 2025-11-26 03:09:02,831 | INFO     | 
[2025-11-25 19:10:04] 2025-11-26 03:09:02,832 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2025-11-25 19:10:04] 2025-11-26 03:09:02,846 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-25 19:10:04] 2025-11-26 03:09:02,846 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-25 19:10:04] 2025-11-26 03:09:02,846 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-25 19:10:04] 2025-11-26 03:09:02,846 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-25 19:10:04] 2025-11-26 03:09:02,847 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-25 19:10:04] 2025-11-26 03:09:02,847 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-25 19:10:04] 2025-11-26 03:09:02,847 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-25 19:10:04] 2025-11-26 03:09:02,847 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-25 19:10:04] 2025-11-26 03:09:02,847 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-25 19:10:04] 2025-11-26 03:09:02,847 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-25 19:10:04] 2025-11-26 03:09:02,847 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-25 19:10:04] 2025-11-26 03:09:02,847 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-25 19:10:04] 2025-11-26 03:09:02,847 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-25 19:10:04] 2025-11-26 03:09:02,847 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-25 19:10:04] 2025-11-26 03:09:02,847 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-25 19:10:04] 2025-11-26 03:09:02,847 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-25 19:10:04] 2025-11-26 03:09:02,848 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-25 19:10:04] 2025-11-26 03:09:02,848 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-25 19:10:04] 2025-11-26 03:09:02,848 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-25 19:10:04] 2025-11-26 03:09:02,848 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-25 19:10:04] 2025-11-26 03:09:02,848 | INFO     | job 6897372749 has completed (purged errors)
[2025-11-25 19:10:04] 2025-11-26 03:09:02,848 | INFO     | overall cleanup function is called
[2025-11-25 19:10:04] 2025-11-26 03:09:03,855 | INFO     | --- collectZombieJob: --- 10, [2894630]
[2025-11-25 19:10:04] 2025-11-26 03:09:03,855 | INFO     | zombie collector waiting for pid 2894630
[2025-11-25 19:10:04] 2025-11-26 03:09:03,855 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-25 19:10:04] 2025-11-26 03:09:03,856 | INFO     | collected zombie processes
[2025-11-25 19:10:04] 2025-11-26 03:09:03,856 | INFO     | will attempt to kill all subprocesses of pid=2894630
[2025-11-25 19:10:04] 2025-11-26 03:09:04,069 | INFO     | process IDs to be killed: [2894630] (in reverse order)
[2025-11-25 19:10:04] 2025-11-26 03:09:04,130 | WARNING  | found no corresponding commands to process id(s)
[2025-11-25 19:10:04] 2025-11-26 03:09:04,130 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-25 19:10:04] 2025-11-26 03:09:04,137 | INFO     | did not find any defunct processes belonging to 2894630
[2025-11-25 19:10:04] 2025-11-26 03:09:04,142 | INFO     | did not find any defunct processes belonging to 2894630
[2025-11-25 19:10:04] 2025-11-26 03:09:04,143 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-25 19:10:04] 2025-11-26 03:09:04,143 | INFO     | ready for new job
[2025-11-25 19:10:04] 2025-11-26 03:09:04,143 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-25 19:10:04] 2025-11-26 03:09:04,144 | INFO     | ***************************************
[2025-11-25 19:10:04] 2025-11-26 03:09:04,144 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-25 19:10:04] 2025-11-26 03:09:04,144 | INFO     | ***************************************
[2025-11-25 19:10:04] 2025-11-26 03:09:04,144 | INFO     | 
[2025-11-25 19:10:04] 2025-11-26 03:09:04,146 | INFO     | architecture information:
[2025-11-25 19:10:04] 2025-11-26 03:09:04,146 | INFO     | executing command: cat /etc/os-release
[2025-11-25 19:10:04] 2025-11-26 03:09:04,157 | INFO     | cat /etc/os-release:
[2025-11-25 19:10:04] NAME="CentOS Linux"
[2025-11-25 19:10:04] VERSION="7 (Core)"
[2025-11-25 19:10:04] ID="centos"
[2025-11-25 19:10:04] ID_LIKE="rhel fedora"
[2025-11-25 19:10:04] VERSION_ID="7"
[2025-11-25 19:10:04] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-25 19:10:04] ANSI_COLOR="0;31"
[2025-11-25 19:10:04] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-25 19:10:04] HOME_URL="https://www.centos.org/"
[2025-11-25 19:10:04] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-25 19:10:04] 
[2025-11-25 19:10:04] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-25 19:10:04] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-25 19:10:04] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-25 19:10:04] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-25 19:10:04] 
[2025-11-25 19:10:04] 2025-11-26 03:09:04,158 | INFO     | ***************************************
[2025-11-25 19:10:04] 2025-11-26 03:09:04,665 | INFO     | executing command: df -mP /home/boinc/slots/0
[2025-11-25 19:10:04] 2025-11-26 03:09:04,679 | INFO     | sufficient remaining disk space (1057741602816 B)
[2025-11-25 19:10:04] 2025-11-26 03:09:04,686 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-25 19:10:04] 2025-11-26 03:09:04,686 | INFO     | current server update state: UPDATING_FINAL
[2025-11-25 19:10:04] 2025-11-26 03:09:04,686 | INFO     | update_server=False
[2025-11-25 19:10:04] 2025-11-26 03:09:04,686 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 19:10:04] 2025-11-26 03:09:04,687 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 19:10:04] 2025-11-26 03:09:04,695 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 19:10:04] 2025-11-26 03:09:04,695 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 19:10:04] 2025-11-26 03:09:04,735 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 19:10:04] 2025-11-26 03:09:04,735 | INFO     | aborting loop
[2025-11-25 19:10:04] 2025-11-26 03:09:05,064 | INFO     | all payload control threads have been joined
[2025-11-25 19:10:04] 2025-11-26 03:09:05,435 | INFO     | all data control threads have been joined
[2025-11-25 19:10:04] 2025-11-26 03:09:05,693 | INFO     | [job] retrieve thread has finished
[2025-11-25 19:10:04] 2025-11-26 03:09:05,702 | INFO     | [job] queue monitor thread has finished
[2025-11-25 19:10:04] 2025-11-26 03:09:05,741 | INFO     | [job] job monitor thread has finished
[2025-11-25 19:10:04] 2025-11-26 03:09:05,780 | INFO     | [payload] validate_post thread has finished
[2025-11-25 19:10:04] 2025-11-26 03:09:05,877 | INFO     | all job control threads have been joined
[2025-11-25 19:10:04] 2025-11-26 03:09:06,028 | INFO     | [payload] failed_post thread has finished
[2025-11-25 19:10:04] 2025-11-26 03:09:06,032 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 19:10:04] 2025-11-26 03:09:06,072 | INFO     | [payload] control thread has finished
[2025-11-25 19:10:04] 2025-11-26 03:09:06,441 | INFO     | [data] control thread has finished
[2025-11-25 19:10:04] 2025-11-26 03:09:06,665 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 19:10:04] 2025-11-26 03:09:06,703 | INFO     | [data] copytool_out thread has finished
[2025-11-25 19:10:04] 2025-11-26 03:09:06,757 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 19:10:04] 2025-11-26 03:09:06,778 | INFO     | [job] validate thread has finished
[2025-11-25 19:10:04] 2025-11-26 03:09:06,875 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 19:10:04] 2025-11-26 03:09:06,883 | INFO     | [job] control thread has finished
[2025-11-25 19:10:04] 2025-11-26 03:09:07,074 | INFO     | [data] copytool_in thread has finished
[2025-11-25 19:10:04] 2025-11-26 03:09:08,698 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 19:10:04] 2025-11-26 03:09:35,492 | INFO     | PID=2888043 has CPU usage=1.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-25 19:10:04] 2025-11-26 03:09:35,492 | INFO     | .. there are 26 such processes running
[2025-11-25 19:10:04] 2025-11-26 03:09:35,493 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 19:10:04] 2025-11-26 03:09:35,493 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 19:10:04] 2025-11-26 03:09:35,493 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 19:10:04] 2025-11-26 03:09:58,262 | INFO     | [monitor] cgroup control has ended
[2025-11-25 19:10:04] 2025-11-26 03:09:58,271 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139652594173760)>', '<ExcThread(monitor, started 139652069586688)>']
[2025-11-25 19:10:04] 2025-11-26 03:09:58,666 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 19:10:04] 2025-11-26 03:09:58,666 | INFO     | [monitor] control thread has ended
[2025-11-25 19:10:04] 2025-11-26 03:10:03,298 | INFO     | all workflow threads have been joined
[2025-11-25 19:10:04] 2025-11-26 03:10:03,298 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 19:10:04] 2025-11-26 03:10:03,298 | INFO     | traces error code: 0
[2025-11-25 19:10:04] 2025-11-26 03:10:03,298 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 19:10:04] 2025-11-26 03:10:03,751 [wrapper] ==== pilot stdout END ====
[2025-11-25 19:10:04] 2025-11-26 03:10:03,765 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 19:10:04] 2025-11-26 03:10:03,766 [wrapper] pilotpid: 2888043
[2025-11-25 19:10:04] 2025-11-26 03:10:03,771 [wrapper] Pilot exit status: 0
[2025-11-25 19:10:04] 2025-11-26 03:10:03,850 [wrapper] pandaids: 6897372749
[2025-11-25 19:10:04] 2025-11-26 03:10:03,964 [wrapper] cleanup supervisor_pilot 2888049 2888044
[2025-11-25 19:10:04] 2025-11-26 03:10:03,967 [wrapper] Test setup, not cleaning
[2025-11-25 19:10:04] 2025-11-26 03:10:03,968 [wrapper] apfmon messages muted
[2025-11-25 19:10:04] 2025-11-26 03:10:03,970 [wrapper] ==== wrapper stdout END ====
[2025-11-25 19:10:04] 2025-11-26 03:10:03,972 [wrapper] ==== wrapper stderr END ====
[2025-11-25 19:10:04]  *** Error codes and diagnostics ***
[2025-11-25 19:10:04]     "exeErrorCode": 65,
[2025-11-25 19:10:04]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 cannot be opened - STOP\"",
[2025-11-25 19:10:04]     "pilotErrorCode": 1305,
[2025-11-25 19:10:04]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 canno",
[2025-11-25 19:10:04]  *** Listing of results directory ***
[2025-11-25 19:10:04] total 403932
[2025-11-25 19:10:04] -rw-r--r--. 1 boinc boinc    576529 Nov 25 08:48 pilot3.tar.gz
[2025-11-25 19:10:04] -rw-r--r--. 1 boinc boinc      5112 Nov 25 08:55 queuedata.json
[2025-11-25 19:10:04] -rwx------. 1 boinc boinc     36292 Nov 25 08:57 runpilot2-wrapper.sh
[2025-11-25 19:10:04] -rw-r--r--. 1 boinc boinc       100 Nov 25 19:03 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 19:10:04] -rwxr-xr-x. 1 boinc boinc      7986 Nov 25 19:03 run_atlas
[2025-11-25 19:10:04] -rw-r--r--. 1 boinc boinc       105 Nov 25 19:03 job.xml
[2025-11-25 19:10:04] -rw-r--r--. 2 boinc boinc 409405911 Nov 25 19:03 EVNT.47483658._003091.pool.root.1
[2025-11-25 19:10:04] -rw-r--r--. 1 boinc boinc      6445 Nov 25 19:03 init_data.xml
[2025-11-25 19:10:04] -rw-r--r--. 2 boinc boinc     15847 Nov 25 19:03 start_atlas.sh
[2025-11-25 19:10:04] drwxrwx--x. 2 boinc boinc      4096 Nov 25 19:03 shared
[2025-11-25 19:10:04] -rw-r--r--. 2 boinc boinc    590106 Nov 25 19:03 input.tar.gz
[2025-11-25 19:10:04] -rw-r--r--. 1 boinc boinc         0 Nov 25 19:03 boinc_lockfile
[2025-11-25 19:10:04] -rw-r--r--. 1 boinc boinc      2785 Nov 25 19:03 pandaJob.out
[2025-11-25 19:10:04] -rw-------. 1 boinc boinc    991877 Nov 25 19:03 agis_schedconf.cvmfs.json
[2025-11-25 19:10:04] -rw-------. 1 boinc boinc   1516240 Nov 25 19:03 agis_ddmendpoints.agis.ALL.json
[2025-11-25 19:10:04] drwx------. 5 boinc boinc      4096 Nov 25 19:03 pilot3
[2025-11-25 19:10:04] -rw-r--r--. 1 boinc boinc       525 Nov 25 19:06 boinc_task_state.xml
[2025-11-25 19:10:04] -rw-------. 1 boinc boinc       994 Nov 25 19:06 memory_monitor_summary.json
[2025-11-25 19:10:04] -rw-------. 1 boinc boinc     49461 Nov 25 19:06 log.47556173._000739.job.log.tgz.1
[2025-11-25 19:10:04] -rw-------. 1 boinc boinc        95 Nov 25 19:09 pilot_heartbeat.json
[2025-11-25 19:10:04] -rw-------. 1 boinc boinc     10332 Nov 25 19:09 heartbeat.json
[2025-11-25 19:10:04] -rw-r--r--. 1 boinc boinc      8192 Nov 25 19:09 boinc_mmap_file
[2025-11-25 19:10:04] -rw-r--r--. 1 boinc boinc        23 Nov 25 19:10 wrapper_checkpoint.txt
[2025-11-25 19:10:04] -rw-------. 1 boinc boinc      4823 Nov 25 19:10 pilotlog.txt
[2025-11-25 19:10:04] -rw-------. 1 boinc boinc    105426 Nov 25 19:10 log.47556173._000739.job.log.1
[2025-11-25 19:10:04] -rw-------. 1 boinc boinc       186 Nov 25 19:10 output.list
[2025-11-25 19:10:04] -rw-r--r--. 1 boinc boinc       620 Nov 25 19:10 runtime_log
[2025-11-25 19:10:04] -rw-------. 1 boinc boinc    174080 Nov 25 19:10 result.tar.gz
[2025-11-25 19:10:04] -rw-r--r--. 1 boinc boinc      8634 Nov 25 19:10 runtime_log.err
[2025-11-25 19:10:04] -rw-------. 1 boinc boinc       644 Nov 25 19:10 9jLKDm7WBi8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmMaJKDmmlAUFo.diag
[2025-11-25 19:10:04] -rw-r--r--. 1 boinc boinc     22550 Nov 25 19:10 stderr.txt
[2025-11-25 19:10:04] No HITS result produced
[2025-11-25 19:10:04]  *** Contents of shared directory: ***
[2025-11-25 19:10:04] total 400580
[2025-11-25 19:10:04] -rw-r--r--. 2 boinc boinc 409405911 Nov 25 19:03 ATLAS.root_0
[2025-11-25 19:10:04] -rw-r--r--. 2 boinc boinc     15847 Nov 25 19:03 start_atlas.sh
[2025-11-25 19:10:04] -rw-r--r--. 2 boinc boinc    590106 Nov 25 19:03 input.tar.gz
[2025-11-25 19:10:04] -rw-------. 1 boinc boinc    174080 Nov 25 19:10 result.tar.gz
19:10:05 (2884371): run_atlas exited; CPU time 50.822077
19:10:05 (2884371): called boinc_finish(0)

</stderr_txt>
]]>

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