Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
22:01:52 (15975): wrapper (7.7.26015): starting
22:01:52 (15975): wrapper: running run_atlas (--nthreads 12)
[2025-11-25 22:01:52] Arguments: --nthreads 12
[2025-11-25 22:01:52] Threads: 12
[2025-11-25 22:01:52] Checking for CVMFS
[2025-11-25 22:01:52] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 22:01:52] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 22:01:52] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 22:01:52] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 22:01:52] 2.11.2.0 3035 287069 94540 153305 0 57 17914559 20275200 1 130560 3 128849659 99.968 17087079 14272 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-25 22:01:52] CVMFS is ok
[2025-11-25 22:01:52] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 22:01:52] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 22:01:52] Further information can be found at the LHC@home message board.
[2025-11-25 22:01:52] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 22:01:52] Checking for apptainer binary...
[2025-11-25 22:01:52] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 22:01:52] Running /usr/bin/apptainer --version
[2025-11-25 22:01:52] apptainer version 1.3.2-1.el7
[2025-11-25 22:01:52] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 22:01:53] c-205-31.aglt2.org
[2025-11-25 22:01:53] apptainer works
[2025-11-25 22:01:53] Set ATHENA_PROC_NUMBER=12
[2025-11-25 22:01:53] Set ATHENA_CORE_NUMBER=12
[2025-11-25 22:01:53] Starting ATLAS job with PandaID=6897373280
[2025-11-25 22:01:53] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 05:08:03]  *** The last 200 lines of the pilot log: ***
[2025-11-26 05:08:03] 2025-11-26 10:07:31,515 | INFO     | monitor loop #1912: job 0:6897373280 is in state 'finished'
[2025-11-26 05:08:03] 2025-11-26 10:07:31,515 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 05:08:03] 2025-11-26 10:07:31,796 | INFO     | CPU arch script returned: x86-64-v2
[2025-11-26 05:08:03] 2025-11-26 10:07:31,800 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1706.9166666666667
[2025-11-26 05:08:03] 2025-11-26 10:07:31,803 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6897373280/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 05:08:03] 2025-11-26 10:07:31,803 | INFO     | extracted standard info from prmon json
[2025-11-26 05:08:03] 2025-11-26 10:07:31,804 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 05:08:03] 2025-11-26 10:07:31,804 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 05:08:03] 2025-11-26 10:07:31,810 | INFO     | fitting pss+swap vs Time
[2025-11-26 05:08:03] 2025-11-26 10:07:31,811 | INFO     | sum of square deviations: 22646741044.89243
[2025-11-26 05:08:03] 2025-11-26 10:07:31,815 | INFO     | sum of deviations: 442703213162.45905
[2025-11-26 05:08:03] 2025-11-26 10:07:31,815 | INFO     | mean x: 1764138876.791866
[2025-11-26 05:08:03] 2025-11-26 10:07:31,815 | INFO     | mean y: 3414162.4880382777
[2025-11-26 05:08:03] 2025-11-26 10:07:31,815 | INFO     | intersect: -34482340219.23167
[2025-11-26 05:08:03] 2025-11-26 10:07:31,816 | INFO     | chi2: 5.446672814971241
[2025-11-26 05:08:03] 2025-11-26 10:07:31,816 | INFO     | sum of square deviations: 21843777151.961323
[2025-11-26 05:08:03] 2025-11-26 10:07:31,820 | INFO     | sum of deviations: 587818330039.247
[2025-11-26 05:08:03] 2025-11-26 10:07:31,820 | INFO     | mean x: 1764138724.2953994
[2025-11-26 05:08:03] 2025-11-26 10:07:31,820 | INFO     | mean y: 3441688.8668280873
[2025-11-26 05:08:03] 2025-11-26 10:07:31,820 | INFO     | intersect: -47469716074.042274
[2025-11-26 05:08:03] 2025-11-26 10:07:31,821 | INFO     | chi2: 2.8619407089566367
[2025-11-26 05:08:03] 2025-11-26 10:07:31,821 | INFO     | current chi2=2.8619407089566367 (change=47.45524825559496 %)
[2025-11-26 05:08:03] 2025-11-26 10:07:31,822 | INFO     | sum of square deviations: 21059997972.11524
[2025-11-26 05:08:03] 2025-11-26 10:07:31,825 | INFO     | sum of deviations: 602265435604.4391
[2025-11-26 05:08:03] 2025-11-26 10:07:31,825 | INFO     | mean x: 1764138571.7965686
[2025-11-26 05:08:03] 2025-11-26 10:07:31,825 | INFO     | mean y: 3444464.8848039214
[2025-11-26 05:08:03] 2025-11-26 10:07:31,826 | INFO     | intersect: -50446687905.32926
[2025-11-26 05:08:03] 2025-11-26 10:07:31,826 | INFO     | chi2: 2.6904349578529145
[2025-11-26 05:08:03] 2025-11-26 10:07:31,826 | INFO     | current chi2=2.6904349578529145 (change=5.992638162173776 %)
[2025-11-26 05:08:03] 2025-11-26 10:07:31,826 | INFO     | right removable region: 407
[2025-11-26 05:08:03] 2025-11-26 10:07:31,827 | INFO     | sum of square deviations: 21843702731.961308
[2025-11-26 05:08:03] 2025-11-26 10:07:31,831 | INFO     | sum of deviations: 297824567873.6683
[2025-11-26 05:08:03] 2025-11-26 10:07:31,831 | INFO     | mean x: 1764139029.2953994
[2025-11-26 05:08:03] 2025-11-26 10:07:31,831 | INFO     | mean y: 3441603.4043583535
[2025-11-26 05:08:03] 2025-11-26 10:07:31,831 | INFO     | intersect: -24049437641.295006
[2025-11-26 05:08:03] 2025-11-26 10:07:31,831 | INFO     | chi2: 2.9835405479820096
[2025-11-26 05:08:03] 2025-11-26 10:07:31,832 | INFO     | current chi2=2.9835405479820096 (change=45.22269559167999 %)
[2025-11-26 05:08:03] 2025-11-26 10:07:31,832 | INFO     | sum of square deviations: 21059874081.519604
[2025-11-26 05:08:03] 2025-11-26 10:07:31,836 | INFO     | sum of deviations: 257947053383.80853
[2025-11-26 05:08:03] 2025-11-26 10:07:31,836 | INFO     | mean x: 1764139181.7990196
[2025-11-26 05:08:03] 2025-11-26 10:07:31,836 | INFO     | mean y: 3449354.5220588236
[2025-11-26 05:08:03] 2025-11-26 10:07:31,836 | INFO     | intersect: -21604206130.146675
[2025-11-26 05:08:03] 2025-11-26 10:07:31,836 | INFO     | chi2: 2.8935172295557994
[2025-11-26 05:08:03] 2025-11-26 10:07:31,837 | INFO     | current chi2=2.8935172295557994 (change=3.017331823664998 %)
[2025-11-26 05:08:03] 2025-11-26 10:07:31,837 | INFO     | left removable region: 20
[2025-11-26 05:08:03] 2025-11-26 10:07:31,837 | INFO     | sum of square deviations: 17972455824.408283
[2025-11-26 05:08:03] 2025-11-26 10:07:31,840 | INFO     | sum of deviations: 360043845126.62
[2025-11-26 05:08:03] 2025-11-26 10:07:31,840 | INFO     | mean x: 1764139151.3074934
[2025-11-26 05:08:03] 2025-11-26 10:07:31,841 | INFO     | mean y: 3492688.0620155036
[2025-11-26 05:08:03] 2025-11-26 10:07:31,841 | INFO     | intersect: -35337667673.147224
[2025-11-26 05:08:03] 2025-11-26 10:07:31,841 | INFO     | chi2: 0.0631944134065479
[2025-11-26 05:08:03] 2025-11-26 10:07:31,841 | INFO     | current memory leak: 20.03 B/s (using 387 data points, chi2=0.06)
[2025-11-26 05:08:03] 2025-11-26 10:07:31,842 | INFO     | could have reported an average CPU frequency of 2350 MHz (18 samples)
[2025-11-26 05:08:03] 2025-11-26 10:07:31,842 | INFO     | ..............................
[2025-11-26 05:08:03] 2025-11-26 10:07:31,842 | INFO     | . Timing measurements:
[2025-11-26 05:08:03] 2025-11-26 10:07:31,842 | INFO     | . get job = 0 s
[2025-11-26 05:08:03] 2025-11-26 10:07:31,842 | INFO     | . initial setup = 2 s
[2025-11-26 05:08:03] 2025-11-26 10:07:31,842 | INFO     | . payload setup = 7 s
[2025-11-26 05:08:03] 2025-11-26 10:07:31,843 | INFO     | . stage-in = 0 s
[2025-11-26 05:08:03] 2025-11-26 10:07:31,843 | INFO     | . payload execution = 25485 s
[2025-11-26 05:08:03] 2025-11-26 10:07:31,843 | INFO     | . stage-out = 3 s
[2025-11-26 05:08:03] 2025-11-26 10:07:31,843 | INFO     | . log creation = 0 s
[2025-11-26 05:08:03] 2025-11-26 10:07:31,843 | INFO     | ..............................
[2025-11-26 05:08:03] 2025-11-26 10:07:31,922 | INFO     | 
[2025-11-26 05:08:03] 2025-11-26 10:07:31,922 | INFO     | job summary report
[2025-11-26 05:08:03] 2025-11-26 10:07:31,922 | INFO     | --------------------------------------------------
[2025-11-26 05:08:03] 2025-11-26 10:07:31,923 | INFO     | PanDA job id: 6897373280
[2025-11-26 05:08:03] 2025-11-26 10:07:31,923 | INFO     | task id: 47556161
[2025-11-26 05:08:03] 2025-11-26 10:07:31,923 | INFO     | errors: (none)
[2025-11-26 05:08:03] 2025-11-26 10:07:31,923 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 05:08:03] 2025-11-26 10:07:31,923 | INFO     | pilot state: finished 
[2025-11-26 05:08:03] 2025-11-26 10:07:31,923 | INFO     | transexitcode: 0
[2025-11-26 05:08:03] 2025-11-26 10:07:31,924 | INFO     | exeerrorcode: 0
[2025-11-26 05:08:03] 2025-11-26 10:07:31,924 | INFO     | exeerrordiag: 
[2025-11-26 05:08:03] 2025-11-26 10:07:31,924 | INFO     | exitcode: 0
[2025-11-26 05:08:03] 2025-11-26 10:07:31,924 | INFO     | exitmsg: OK
[2025-11-26 05:08:03] 2025-11-26 10:07:31,924 | INFO     | cpuconsumptiontime: 292940 s
[2025-11-26 05:08:03] 2025-11-26 10:07:31,924 | INFO     | nevents: 1000
[2025-11-26 05:08:03] 2025-11-26 10:07:31,924 | INFO     | neventsw: 0
[2025-11-26 05:08:03] 2025-11-26 10:07:31,924 | INFO     | pid: 26075
[2025-11-26 05:08:03] 2025-11-26 10:07:31,924 | INFO     | pgrp: 26075
[2025-11-26 05:08:03] 2025-11-26 10:07:31,924 | INFO     | corecount: 12
[2025-11-26 05:08:03] 2025-11-26 10:07:31,925 | INFO     | event service: False
[2025-11-26 05:08:03] 2025-11-26 10:07:31,925 | INFO     | sizes: {0: 2284265, 5: 2284527, 11: 2284583, 25497: 2321736, 25502: 2330786, 25507: 2330976}
[2025-11-26 05:08:03] 2025-11-26 10:07:31,925 | INFO     | --------------------------------------------------
[2025-11-26 05:08:03] 2025-11-26 10:07:31,925 | INFO     | 
[2025-11-26 05:08:03] 2025-11-26 10:07:31,925 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-26 05:08:03] 2025-11-26 10:07:31,950 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 05:08:03] 2025-11-26 10:07:31,950 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 05:08:03] 2025-11-26 10:07:31,950 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 05:08:03] 2025-11-26 10:07:31,950 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 05:08:03] 2025-11-26 10:07:31,951 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 05:08:03] 2025-11-26 10:07:31,951 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 05:08:03] 2025-11-26 10:07:31,951 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 05:08:03] 2025-11-26 10:07:31,951 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 05:08:03] 2025-11-26 10:07:31,951 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 05:08:03] 2025-11-26 10:07:31,951 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 05:08:03] 2025-11-26 10:07:31,952 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 05:08:03] 2025-11-26 10:07:31,952 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 05:08:03] 2025-11-26 10:07:31,952 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 05:08:03] 2025-11-26 10:07:31,952 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 05:08:03] 2025-11-26 10:07:31,952 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 05:08:03] 2025-11-26 10:07:31,952 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 05:08:03] 2025-11-26 10:07:31,953 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 05:08:03] 2025-11-26 10:07:31,953 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 05:08:03] 2025-11-26 10:07:31,953 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 05:08:03] 2025-11-26 10:07:31,953 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 05:08:03] 2025-11-26 10:07:31,953 | INFO     | job 6897373280 has completed (purged errors)
[2025-11-26 05:08:03] 2025-11-26 10:07:31,954 | INFO     | overall cleanup function is called
[2025-11-26 05:08:03] 2025-11-26 10:07:32,968 | INFO     | --- collectZombieJob: --- 10, [26075]
[2025-11-26 05:08:03] 2025-11-26 10:07:32,969 | INFO     | zombie collector waiting for pid 26075
[2025-11-26 05:08:03] 2025-11-26 10:07:32,969 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 05:08:03] 2025-11-26 10:07:32,969 | INFO     | collected zombie processes
[2025-11-26 05:08:03] 2025-11-26 10:07:32,969 | INFO     | will attempt to kill all subprocesses of pid=26075
[2025-11-26 05:08:03] 2025-11-26 10:07:33,061 | INFO     | process IDs to be killed: [26075] (in reverse order)
[2025-11-26 05:08:03] 2025-11-26 10:07:33,117 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 05:08:03] 2025-11-26 10:07:33,117 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 05:08:03] 2025-11-26 10:07:33,121 | INFO     | did not find any defunct processes belonging to 26075
[2025-11-26 05:08:03] 2025-11-26 10:07:33,125 | INFO     | did not find any defunct processes belonging to 26075
[2025-11-26 05:08:03] 2025-11-26 10:07:33,126 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 05:08:03] 2025-11-26 10:07:33,127 | INFO     | ready for new job
[2025-11-26 05:08:03] 2025-11-26 10:07:33,127 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 05:08:03] 2025-11-26 10:07:33,129 | INFO     | ***************************************
[2025-11-26 05:08:03] 2025-11-26 10:07:33,129 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 05:08:03] 2025-11-26 10:07:33,129 | INFO     | ***************************************
[2025-11-26 05:08:03] 2025-11-26 10:07:33,129 | INFO     | 
[2025-11-26 05:08:03] 2025-11-26 10:07:33,130 | INFO     | architecture information:
[2025-11-26 05:08:03] 2025-11-26 10:07:33,130 | INFO     | executing command: cat /etc/os-release
[2025-11-26 05:08:03] 2025-11-26 10:07:33,148 | INFO     | cat /etc/os-release:
[2025-11-26 05:08:03] NAME="CentOS Linux"
[2025-11-26 05:08:03] VERSION="7 (Core)"
[2025-11-26 05:08:03] ID="centos"
[2025-11-26 05:08:03] ID_LIKE="rhel fedora"
[2025-11-26 05:08:03] VERSION_ID="7"
[2025-11-26 05:08:03] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 05:08:03] ANSI_COLOR="0;31"
[2025-11-26 05:08:03] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 05:08:03] HOME_URL="https://www.centos.org/"
[2025-11-26 05:08:03] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 05:08:03] 
[2025-11-26 05:08:03] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 05:08:03] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 05:08:03] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 05:08:03] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 05:08:03] 
[2025-11-26 05:08:03] 2025-11-26 10:07:33,148 | INFO     | ***************************************
[2025-11-26 05:08:03] 2025-11-26 10:07:33,651 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-26 05:08:03] 2025-11-26 10:07:33,671 | INFO     | sufficient remaining disk space (28257026048 B)
[2025-11-26 05:08:03] 2025-11-26 10:07:33,672 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 05:08:03] 2025-11-26 10:07:33,672 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 05:08:03] 2025-11-26 10:07:33,672 | INFO     | update_server=False
[2025-11-26 05:08:03] 2025-11-26 10:07:33,672 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 05:08:03] 2025-11-26 10:07:33,672 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 05:08:03] 2025-11-26 10:07:33,673 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 05:08:03] 2025-11-26 10:07:33,742 | INFO     | all payload control threads have been joined
[2025-11-26 05:08:03] 2025-11-26 10:07:34,018 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-26 05:08:03] 2025-11-26 10:07:34,019 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-26 05:08:03] 2025-11-26 10:07:34,019 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 05:08:03] 2025-11-26 10:07:34,019 | INFO     | will abort loop
[2025-11-26 05:08:03] 2025-11-26 10:07:34,335 | INFO     | all data control threads have been joined
[2025-11-26 05:08:03] 2025-11-26 10:07:34,439 | INFO     | all job control threads have been joined
[2025-11-26 05:08:03] 2025-11-26 10:07:34,493 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 05:08:03] 2025-11-26 10:07:34,677 | INFO     | [job] retrieve thread has finished
[2025-11-26 05:08:03] 2025-11-26 10:07:34,678 | INFO     | [job] queue monitor thread has finished
[2025-11-26 05:08:03] 2025-11-26 10:07:34,745 | INFO     | [payload] control thread has finished
[2025-11-26 05:08:03] 2025-11-26 10:07:34,879 | INFO     | [payload] failed_post thread has finished
[2025-11-26 05:08:03] 2025-11-26 10:07:35,024 | INFO     | [job] job monitor thread has finished
[2025-11-26 05:08:03] 2025-11-26 10:07:35,113 | INFO     | [data] copytool_in thread has finished
[2025-11-26 05:08:03] 2025-11-26 10:07:35,329 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 05:08:03] 2025-11-26 10:07:35,341 | INFO     | [data] control thread has finished
[2025-11-26 05:08:03] 2025-11-26 10:07:35,445 | INFO     | [job] control thread has finished
[2025-11-26 05:08:03] 2025-11-26 10:07:35,938 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 05:08:03] 2025-11-26 10:07:35,944 | INFO     | [job] validate thread has finished
[2025-11-26 05:08:03] 2025-11-26 10:07:35,994 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 05:08:03] 2025-11-26 10:07:36,053 | INFO     | [payload] validate_post thread has finished
[2025-11-26 05:08:03] 2025-11-26 10:07:36,066 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 05:08:03] 2025-11-26 10:07:36,499 | INFO     | [data] copytool_out thread has finished
[2025-11-26 05:08:03] 2025-11-26 10:07:37,678 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 05:08:03] 2025-11-26 10:07:50,191 | INFO     | [monitor] cgroup control has ended
[2025-11-26 05:08:03] 2025-11-26 10:07:50,772 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139882402826048)>', '<ExcThread(monitor, started 139881808373504)>']
[2025-11-26 05:08:03] 2025-11-26 10:07:55,794 | INFO     | all workflow threads have been joined
[2025-11-26 05:08:03] 2025-11-26 10:07:55,795 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 05:08:03] 2025-11-26 10:07:55,795 | INFO     | traces error code: 0
[2025-11-26 05:08:03] 2025-11-26 10:07:55,795 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 05:08:03] 2025-11-26 10:08:03,265 | INFO     | PID=19702 has CPU usage=3.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-26 05:08:03] 2025-11-26 10:08:03,265 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 05:08:03] 2025-11-26 10:08:03,265 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 05:08:03] 2025-11-26 10:08:03,265 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 05:08:03] 2025-11-26 10:08:03,266 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 05:08:03] 2025-11-26 10:08:03,266 | INFO     | [monitor] control thread has ended
[2025-11-26 05:08:03] 2025-11-26 10:08:03,356 [wrapper] ==== pilot stdout END ====
[2025-11-26 05:08:03] 2025-11-26 10:08:03,360 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 05:08:03] 2025-11-26 10:08:03,363 [wrapper] pilotpid: 19702
[2025-11-26 05:08:03] 2025-11-26 10:08:03,367 [wrapper] Pilot exit status: 0
[2025-11-26 05:08:03] 2025-11-26 10:08:03,380 [wrapper] pandaids: 6897373280
[2025-11-26 05:08:03] 2025-11-26 10:08:03,419 [wrapper] cleanup supervisor_pilot 28265 19703
[2025-11-26 05:08:03] 2025-11-26 10:08:03,423 [wrapper] Test setup, not cleaning
[2025-11-26 05:08:03] 2025-11-26 10:08:03,427 [wrapper] apfmon messages muted
[2025-11-26 05:08:03] 2025-11-26 10:08:03,431 [wrapper] ==== wrapper stdout END ====
[2025-11-26 05:08:03] 2025-11-26 10:08:03,435 [wrapper] ==== wrapper stderr END ====
[2025-11-26 05:08:03]  *** Error codes and diagnostics ***
[2025-11-26 05:08:03]     "exeErrorCode": 0,
[2025-11-26 05:08:03]     "exeErrorDiag": "",
[2025-11-26 05:08:03]     "pilotErrorCode": 0,
[2025-11-26 05:08:03]     "pilotErrorDiag": "",
[2025-11-26 05:08:03]  *** Listing of results directory ***
[2025-11-26 05:08:03] total 1304032
[2025-11-26 05:08:03] -rw-r--r-- 1 boincer umatlas    576529 Nov 25 11:48 pilot3.tar.gz
[2025-11-26 05:08:03] -rw-r--r-- 1 boincer umatlas      5112 Nov 25 11:55 queuedata.json
[2025-11-26 05:08:03] -rwx------ 1 boincer umatlas     36292 Nov 25 11:57 runpilot2-wrapper.sh
[2025-11-26 05:08:03] -rw-r--r-- 1 boincer umatlas       100 Nov 25 22:01 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 05:08:03] -rwxr-xr-x 1 boincer umatlas      7986 Nov 25 22:01 run_atlas
[2025-11-26 05:08:03] -rw-r--r-- 1 boincer umatlas       105 Nov 25 22:01 job.xml
[2025-11-26 05:08:03] -rw-r--r-- 2 boincer umatlas 409783123 Nov 25 22:01 EVNT.47483658._002215.pool.root.1
[2025-11-26 05:08:03] -rw-r--r-- 2 boincer umatlas     15847 Nov 25 22:01 start_atlas.sh
[2025-11-26 05:08:03] drwxrwx--x 2 boincer umatlas      4096 Nov 25 22:01 shared
[2025-11-26 05:08:03] -rw-r--r-- 2 boincer umatlas    590112 Nov 25 22:01 input.tar.gz
[2025-11-26 05:08:03] -rw-r--r-- 1 boincer umatlas         0 Nov 25 22:01 boinc_lockfile
[2025-11-26 05:08:03] -rw-r--r-- 1 boincer umatlas      2786 Nov 25 22:01 pandaJob.out
[2025-11-26 05:08:03] -rw------- 1 boincer umatlas        57 Nov 25 22:01 setup.sh.local
[2025-11-26 05:08:03] -rw------- 1 boincer umatlas    991877 Nov 25 22:02 agis_schedconf.cvmfs.json
[2025-11-26 05:08:03] drwx------ 5 boincer umatlas      4096 Nov 25 22:02 pilot3
[2025-11-26 05:08:03] -rw-r--r-- 1 boincer umatlas       532 Nov 26 04:58 boinc_task_state.xml
[2025-11-26 05:08:03] -rw-r--r-- 1 boincer umatlas      5956 Nov 26 05:04 init_data.xml
[2025-11-26 05:08:03] -rw------- 1 boincer umatlas 910111471 Nov 26 05:06 HITS.47556161._001987.pool.root.1
[2025-11-26 05:08:03] -rw------- 1 boincer umatlas        95 Nov 26 05:07 pilot_heartbeat.json
[2025-11-26 05:08:03] -rw------- 1 boincer umatlas      1061 Nov 26 05:07 memory_monitor_summary.json
[2025-11-26 05:08:03] -rw------- 1 boincer umatlas   1516240 Nov 26 05:07 agis_ddmendpoints.agis.ALL.json
[2025-11-26 05:08:03] -rw------- 1 boincer umatlas   2170554 Nov 26 05:07 log.47556161._001987.job.log.tgz.1
[2025-11-26 05:08:03] -rw------- 1 boincer umatlas      8680 Nov 26 05:07 heartbeat.json
[2025-11-26 05:08:03] -rw-r--r-- 1 boincer umatlas        29 Nov 26 05:07 wrapper_checkpoint.txt
[2025-11-26 05:08:03] -rw-r--r-- 1 boincer umatlas      8192 Nov 26 05:07 boinc_mmap_file
[2025-11-26 05:08:03] -rw------- 1 boincer umatlas       745 Nov 26 05:08 pilotlog.txt
[2025-11-26 05:08:03] -rw------- 1 boincer umatlas   3589048 Nov 26 05:08 log.47556161._001987.job.log.1
[2025-11-26 05:08:03] -rw------- 1 boincer umatlas       353 Nov 26 05:08 output.list
[2025-11-26 05:08:03] -rw-r--r-- 1 boincer umatlas       620 Nov 26 05:08 runtime_log
[2025-11-26 05:08:03] -rw------- 1 boincer umatlas   5775360 Nov 26 05:08 result.tar.gz
[2025-11-26 05:08:03] -rw------- 1 boincer umatlas       670 Nov 26 05:08 WsCODm6WBi8n9Rq4apOajLDm4fhM0noT9bVo0NGKDm8ZJKDm3C3Oxm.diag
[2025-11-26 05:08:03] -rw-r--r-- 1 boincer umatlas      9345 Nov 26 05:08 runtime_log.err
[2025-11-26 05:08:03] -rw-r--r-- 1 boincer umatlas     21300 Nov 26 05:08 stderr.txt
[2025-11-26 05:08:03] HITS file was successfully produced:
[2025-11-26 05:08:03] -rw------- 1 boincer umatlas 910111471 Nov 26 05:06 shared/HITS.pool.root.1
[2025-11-26 05:08:03]  *** Contents of shared directory: ***
[2025-11-26 05:08:03] total 1295208
[2025-11-26 05:08:03] -rw-r--r-- 2 boincer umatlas 409783123 Nov 25 22:01 ATLAS.root_0
[2025-11-26 05:08:03] -rw-r--r-- 2 boincer umatlas     15847 Nov 25 22:01 start_atlas.sh
[2025-11-26 05:08:03] -rw-r--r-- 2 boincer umatlas    590112 Nov 25 22:01 input.tar.gz
[2025-11-26 05:08:03] -rw------- 1 boincer umatlas 910111471 Nov 26 05:06 HITS.pool.root.1
[2025-11-26 05:08:03] -rw------- 1 boincer umatlas   5775360 Nov 26 05:08 result.tar.gz
05:08:04 (15975): run_atlas exited; CPU time 286328.716753
05:08:04 (15975): called boinc_finish(0)

</stderr_txt>
]]>

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