Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
21:46:04 (405468): wrapper (7.7.26015): starting
21:46:04 (405468): wrapper: running run_atlas (--nthreads 8)
[2025-11-25 21:46:04] Arguments: --nthreads 8
[2025-11-25 21:46:04] Threads: 8
[2025-11-25 21:46:04] Checking for CVMFS
[2025-11-25 21:46:05] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 21:46:06] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 21:46:06] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 21:46:07] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 21:46:07] 2.13.3.0 10079 27771 395268 153305 3 151 22070753 32935937 52486 16776704 0 304971157 99.795 156431286 29125 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-25 21:46:07] CVMFS is ok
[2025-11-25 21:46:07] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 21:46:07] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 21:46:07] Further information can be found at the LHC@home message board.
[2025-11-25 21:46:07] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 21:46:07] Checking for apptainer binary...
[2025-11-25 21:46:07] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 21:46:07] Running /usr/bin/apptainer --version
[2025-11-25 21:46:07] apptainer version 1.4.4-1.el9
[2025-11-25 21:46:07] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 21:46:08] lc-12-33.aglt2.org
[2025-11-25 21:46:08] apptainer works
[2025-11-25 21:46:08] Set ATHENA_PROC_NUMBER=8
[2025-11-25 21:46:08] Set ATHENA_CORE_NUMBER=8
[2025-11-25 21:46:08] Starting ATLAS job with PandaID=6897373263
[2025-11-25 21:46:08] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/8 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 18:54:27]  *** The last 200 lines of the pilot log: ***
[2025-11-26 18:54:27] 2025-11-26 23:53:44,389 | INFO     | fitting pss+swap vs Time
[2025-11-26 18:54:27] 2025-11-26 23:53:44,391 | INFO     | sum of square deviations: 596947668990.7748
[2025-11-26 18:54:27] 2025-11-26 23:53:44,429 | INFO     | sum of deviations: 3167040458798.8813
[2025-11-26 18:54:27] 2025-11-26 23:53:44,433 | INFO     | mean x: 1764163266.4292605
[2025-11-26 18:54:27] 2025-11-26 23:53:44,434 | INFO     | mean y: 2893189.6463022507
[2025-11-26 18:54:27] 2025-11-26 23:53:44,434 | INFO     | intersect: -9356681746.2173
[2025-11-26 18:54:27] 2025-11-26 23:53:44,435 | INFO     | chi2: 12.699471210729456
[2025-11-26 18:54:27] 2025-11-26 23:53:44,437 | INFO     | sum of square deviations: 589779317717.0897
[2025-11-26 18:54:27] 2025-11-26 23:53:44,492 | INFO     | sum of deviations: 3599808968449.5337
[2025-11-26 18:54:27] 2025-11-26 23:53:44,492 | INFO     | mean x: 1764163113.937046
[2025-11-26 18:54:27] 2025-11-26 23:53:44,492 | INFO     | mean y: 2902393.2760290555
[2025-11-26 18:54:27] 2025-11-26 23:53:44,493 | INFO     | intersect: -10764939083.329916
[2025-11-26 18:54:27] 2025-11-26 23:53:44,494 | INFO     | chi2: 9.27443065117967
[2025-11-26 18:54:27] 2025-11-26 23:53:44,494 | INFO     | current chi2=9.27443065117967 (change=26.969946249856896 %)
[2025-11-26 18:54:27] 2025-11-26 23:53:44,496 | INFO     | sum of square deviations: 582668595430.7534
[2025-11-26 18:54:27] 2025-11-26 23:53:44,534 | INFO     | sum of deviations: 4043332836743.1016
[2025-11-26 18:54:27] 2025-11-26 23:53:44,534 | INFO     | mean x: 1764162961.4448946
[2025-11-26 18:54:27] 2025-11-26 23:53:44,534 | INFO     | mean y: 2911905.824959481
[2025-11-26 18:54:27] 2025-11-26 23:53:44,535 | INFO     | intersect: -12239206662.626053
[2025-11-26 18:54:27] 2025-11-26 23:53:44,536 | INFO     | chi2: 5.803499245217214
[2025-11-26 18:54:27] 2025-11-26 23:53:44,537 | INFO     | current chi2=5.803499245217214 (change=37.42473836408457 %)
[2025-11-26 18:54:27] 2025-11-26 23:53:44,539 | INFO     | sum of square deviations: 575615119513.0714
[2025-11-26 18:54:27] 2025-11-26 23:53:44,575 | INFO     | sum of deviations: 4281284768829.0137
[2025-11-26 18:54:27] 2025-11-26 23:53:44,579 | INFO     | mean x: 1764162808.9511797
[2025-11-26 18:54:27] 2025-11-26 23:53:44,579 | INFO     | mean y: 2917044.716842962
[2025-11-26 18:54:27] 2025-11-26 23:53:44,580 | INFO     | intersect: -13118495349.881975
[2025-11-26 18:54:27] 2025-11-26 23:53:44,582 | INFO     | chi2: 4.423648678512705
[2025-11-26 18:54:27] 2025-11-26 23:53:44,582 | INFO     | current chi2=4.423648678512705 (change=23.77618240997745 %)
[2025-11-26 18:54:27] 2025-11-26 23:53:44,582 | INFO     | right removable region: 1228
[2025-11-26 18:54:27] 2025-11-26 23:53:44,584 | INFO     | sum of square deviations: 589777853717.0894
[2025-11-26 18:54:27] 2025-11-26 23:53:44,635 | INFO     | sum of deviations: 2708075750671.5513
[2025-11-26 18:54:27] 2025-11-26 23:53:44,636 | INFO     | mean x: 1764163418.937046
[2025-11-26 18:54:27] 2025-11-26 23:53:44,636 | INFO     | mean y: 2902949.8660209845
[2025-11-26 18:54:27] 2025-11-26 23:53:44,636 | INFO     | intersect: -8097584623.438054
[2025-11-26 18:54:27] 2025-11-26 23:53:44,637 | INFO     | chi2: 9.2844144923832
[2025-11-26 18:54:27] 2025-11-26 23:53:44,638 | INFO     | current chi2=9.2844144923832 (change=26.891330053655793 %)
[2025-11-26 18:54:27] 2025-11-26 23:53:44,639 | INFO     | sum of square deviations: 582666421749.5692
[2025-11-26 18:54:27] 2025-11-26 23:53:44,681 | INFO     | sum of deviations: 2517876943327.1357
[2025-11-26 18:54:27] 2025-11-26 23:53:44,682 | INFO     | mean x: 1764163571.436791
[2025-11-26 18:54:27] 2025-11-26 23:53:44,682 | INFO     | mean y: 2907024.2965964344
[2025-11-26 18:54:27] 2025-11-26 23:53:44,682 | INFO     | intersect: -7620574636.857896
[2025-11-26 18:54:27] 2025-11-26 23:53:44,683 | INFO     | chi2: 8.684615825444503
[2025-11-26 18:54:27] 2025-11-26 23:53:44,684 | INFO     | current chi2=8.684615825444503 (change=6.4602745539932975 %)
[2025-11-26 18:54:27] 2025-11-26 23:53:44,684 | INFO     | left removable region: 20
[2025-11-26 18:54:27] 2025-11-26 23:53:44,685 | INFO     | sum of square deviations: 546608683410.46936
[2025-11-26 18:54:27] 2025-11-26 23:53:44,738 | INFO     | sum of deviations: 3465000143844.89
[2025-11-26 18:54:27] 2025-11-26 23:53:44,739 | INFO     | mean x: 1764163388.4644039
[2025-11-26 18:54:27] 2025-11-26 23:53:44,739 | INFO     | mean y: 2935514.520695364
[2025-11-26 18:54:27] 2025-11-26 23:53:44,739 | INFO     | intersect: -11180250154.34782
[2025-11-26 18:54:27] 2025-11-26 23:53:44,741 | INFO     | chi2: 0.20549655530995234
[2025-11-26 18:54:27] 2025-11-26 23:53:44,741 | INFO     | current memory leak: 6.34 B/s (using 1208 data points, chi2=0.21)
[2025-11-26 18:54:27] 2025-11-26 23:53:44,742 | INFO     | could have reported an average CPU frequency of 2743 MHz (45 samples)
[2025-11-26 18:54:27] 2025-11-26 23:53:44,742 | INFO     | ..............................
[2025-11-26 18:54:27] 2025-11-26 23:53:44,742 | INFO     | . Timing measurements:
[2025-11-26 18:54:27] 2025-11-26 23:53:44,742 | INFO     | . get job = 0 s
[2025-11-26 18:54:27] 2025-11-26 23:53:44,743 | INFO     | . initial setup = 4 s
[2025-11-26 18:54:27] 2025-11-26 23:53:44,743 | INFO     | . payload setup = 39 s
[2025-11-26 18:54:27] 2025-11-26 23:53:44,743 | INFO     | . stage-in = 0 s
[2025-11-26 18:54:27] 2025-11-26 23:53:44,743 | INFO     | . payload execution = 75854 s
[2025-11-26 18:54:27] 2025-11-26 23:53:44,743 | INFO     | . stage-out = 12 s
[2025-11-26 18:54:27] 2025-11-26 23:53:44,743 | INFO     | . log creation = 4 s
[2025-11-26 18:54:27] 2025-11-26 23:53:44,743 | INFO     | ..............................
[2025-11-26 18:54:27] 2025-11-26 23:53:45,066 | INFO     | 
[2025-11-26 18:54:27] 2025-11-26 23:53:45,066 | INFO     | job summary report
[2025-11-26 18:54:27] 2025-11-26 23:53:45,067 | INFO     | --------------------------------------------------
[2025-11-26 18:54:27] 2025-11-26 23:53:45,067 | INFO     | PanDA job id: 6897373263
[2025-11-26 18:54:27] 2025-11-26 23:53:45,067 | INFO     | task id: 47556161
[2025-11-26 18:54:27] 2025-11-26 23:53:45,067 | INFO     | errors: (none)
[2025-11-26 18:54:27] 2025-11-26 23:53:45,067 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 18:54:27] 2025-11-26 23:53:45,067 | INFO     | pilot state: finished 
[2025-11-26 18:54:27] 2025-11-26 23:53:45,067 | INFO     | transexitcode: 0
[2025-11-26 18:54:27] 2025-11-26 23:53:45,067 | INFO     | exeerrorcode: 0
[2025-11-26 18:54:27] 2025-11-26 23:53:45,067 | INFO     | exeerrordiag: 
[2025-11-26 18:54:27] 2025-11-26 23:53:45,067 | INFO     | exitcode: 0
[2025-11-26 18:54:27] 2025-11-26 23:53:45,067 | INFO     | exitmsg: OK
[2025-11-26 18:54:27] 2025-11-26 23:53:45,067 | INFO     | cpuconsumptiontime: 256480 s
[2025-11-26 18:54:27] 2025-11-26 23:53:45,067 | INFO     | nevents: 1000
[2025-11-26 18:54:27] 2025-11-26 23:53:45,067 | INFO     | neventsw: 0
[2025-11-26 18:54:27] 2025-11-26 23:53:45,068 | INFO     | pid: 445301
[2025-11-26 18:54:27] 2025-11-26 23:53:45,068 | INFO     | pgrp: 445301
[2025-11-26 18:54:27] 2025-11-26 23:53:45,068 | INFO     | corecount: 8
[2025-11-26 18:54:27] 2025-11-26 23:53:45,068 | INFO     | event service: False
[2025-11-26 18:54:27] 2025-11-26 23:53:45,068 | INFO     | sizes: {0: 2284038, 1: 2284122, 2: 2284321, 13: 2284321, 24: 2284377, 26: 2284667, 35: 2284823, 75898: 2343897, 75899: 2343896, 75912: 2353030, 75938: 2353220}
[2025-11-26 18:54:27] 2025-11-26 23:53:45,068 | INFO     | --------------------------------------------------
[2025-11-26 18:54:27] 2025-11-26 23:53:45,068 | INFO     | 
[2025-11-26 18:54:27] 2025-11-26 23:53:45,068 | INFO     | executing command: ls -lF /tmp/boinchome/slots/8
[2025-11-26 18:54:27] 2025-11-26 23:53:45,148 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 18:54:27] 2025-11-26 23:53:45,149 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 18:54:27] 2025-11-26 23:53:45,149 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 18:54:27] 2025-11-26 23:53:45,149 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 18:54:27] 2025-11-26 23:53:45,149 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 18:54:27] 2025-11-26 23:53:45,149 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 18:54:27] 2025-11-26 23:53:45,149 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 18:54:27] 2025-11-26 23:53:45,149 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 18:54:27] 2025-11-26 23:53:45,149 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 18:54:27] 2025-11-26 23:53:45,149 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 18:54:27] 2025-11-26 23:53:45,150 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 18:54:27] 2025-11-26 23:53:45,150 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 18:54:27] 2025-11-26 23:53:45,150 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 18:54:27] 2025-11-26 23:53:45,150 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 18:54:27] 2025-11-26 23:53:45,150 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 18:54:27] 2025-11-26 23:53:45,150 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 18:54:27] 2025-11-26 23:53:45,150 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 18:54:27] 2025-11-26 23:53:45,150 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 18:54:27] 2025-11-26 23:53:45,150 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 18:54:27] 2025-11-26 23:53:45,150 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 18:54:27] 2025-11-26 23:53:45,150 | INFO     | job 6897373263 has completed (purged errors)
[2025-11-26 18:54:27] 2025-11-26 23:53:45,151 | INFO     | overall cleanup function is called
[2025-11-26 18:54:27] 2025-11-26 23:53:45,306 | INFO     | PID=418467 has CPU usage=4.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-26 18:54:27] 2025-11-26 23:53:45,307 | INFO     | .. there are 85 such processes running
[2025-11-26 18:54:27] 2025-11-26 23:53:46,171 | INFO     | --- collectZombieJob: --- 10, [445301]
[2025-11-26 18:54:27] 2025-11-26 23:53:46,174 | INFO     | zombie collector waiting for pid 445301
[2025-11-26 18:54:27] 2025-11-26 23:53:46,175 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 18:54:27] 2025-11-26 23:53:46,175 | INFO     | collected zombie processes
[2025-11-26 18:54:27] 2025-11-26 23:53:46,175 | INFO     | will attempt to kill all subprocesses of pid=445301
[2025-11-26 18:54:27] 2025-11-26 23:53:48,018 | INFO     | process IDs to be killed: [445301] (in reverse order)
[2025-11-26 18:54:27] 2025-11-26 23:53:48,521 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 18:54:27] 2025-11-26 23:53:48,521 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 18:54:27] 2025-11-26 23:53:48,648 | INFO     | did not find any defunct processes belonging to 445301
[2025-11-26 18:54:27] 2025-11-26 23:53:48,789 | INFO     | did not find any defunct processes belonging to 445301
[2025-11-26 18:54:27] 2025-11-26 23:53:48,806 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 18:54:27] 2025-11-26 23:53:48,806 | INFO     | ready for new job
[2025-11-26 18:54:27] 2025-11-26 23:53:48,806 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 18:54:27] 2025-11-26 23:53:48,827 | INFO     | ***************************************
[2025-11-26 18:54:27] 2025-11-26 23:53:48,828 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 18:54:27] 2025-11-26 23:53:48,828 | INFO     | ***************************************
[2025-11-26 18:54:27] 2025-11-26 23:53:48,828 | INFO     | 
[2025-11-26 18:54:27] 2025-11-26 23:53:48,847 | INFO     | architecture information:
[2025-11-26 18:54:27] 2025-11-26 23:53:48,869 | INFO     | executing command: cat /etc/os-release
[2025-11-26 18:54:27] 2025-11-26 23:53:48,915 | INFO     | cat /etc/os-release:
[2025-11-26 18:54:27] NAME="CentOS Linux"
[2025-11-26 18:54:27] VERSION="7 (Core)"
[2025-11-26 18:54:27] ID="centos"
[2025-11-26 18:54:27] ID_LIKE="rhel fedora"
[2025-11-26 18:54:27] VERSION_ID="7"
[2025-11-26 18:54:27] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 18:54:27] ANSI_COLOR="0;31"
[2025-11-26 18:54:27] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 18:54:27] HOME_URL="https://www.centos.org/"
[2025-11-26 18:54:27] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 18:54:27] 
[2025-11-26 18:54:27] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 18:54:27] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 18:54:27] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 18:54:27] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 18:54:27] 
[2025-11-26 18:54:27] 2025-11-26 23:53:48,916 | INFO     | ***************************************
[2025-11-26 18:54:27] 2025-11-26 23:53:49,422 | INFO     | executing command: df -mP /tmp/boinchome/slots/8
[2025-11-26 18:54:27] 2025-11-26 23:53:49,461 | INFO     | sufficient remaining disk space (66088599552 B)
[2025-11-26 18:54:27] 2025-11-26 23:53:49,461 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 18:54:27] 2025-11-26 23:53:49,461 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 18:54:27] 2025-11-26 23:53:49,461 | INFO     | update_server=False
[2025-11-26 18:54:27] 2025-11-26 23:53:49,461 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 18:54:27] 2025-11-26 23:53:49,608 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 18:54:27] 2025-11-26 23:53:49,828 | INFO     | all data control threads have been joined
[2025-11-26 18:54:27] 2025-11-26 23:53:50,002 | INFO     | all payload control threads have been joined
[2025-11-26 18:54:27] 2025-11-26 23:53:50,037 | INFO     | all job control threads have been joined
[2025-11-26 18:54:27] 2025-11-26 23:53:50,056 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 18:54:27] 2025-11-26 23:53:50,290 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 18:54:27] 2025-11-26 23:53:50,291 | INFO     | aborting loop
[2025-11-26 18:54:27] 2025-11-26 23:53:50,467 | INFO     | [job] retrieve thread has finished
[2025-11-26 18:54:27] 2025-11-26 23:53:50,571 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 18:54:27] 2025-11-26 23:53:50,614 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 18:54:27] 2025-11-26 23:53:50,615 | INFO     | [data] copytool_in thread has finished
[2025-11-26 18:54:27] 2025-11-26 23:53:50,700 | INFO     | [job] validate thread has finished
[2025-11-26 18:54:27] 2025-11-26 23:53:50,707 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 18:54:27] 2025-11-26 23:53:50,708 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 18:54:27] 2025-11-26 23:53:50,833 | INFO     | [data] control thread has finished
[2025-11-26 18:54:27] 2025-11-26 23:53:51,011 | INFO     | [payload] control thread has finished
[2025-11-26 18:54:27] 2025-11-26 23:53:51,044 | INFO     | [job] control thread has finished
[2025-11-26 18:54:27] 2025-11-26 23:53:51,064 | INFO     | [job] queue monitor thread has finished
[2025-11-26 18:54:27] 2025-11-26 23:53:51,295 | INFO     | [job] job monitor thread has finished
[2025-11-26 18:54:27] 2025-11-26 23:53:51,436 | INFO     | [payload] validate_post thread has finished
[2025-11-26 18:54:27] 2025-11-26 23:53:51,615 | INFO     | [data] copytool_out thread has finished
[2025-11-26 18:54:27] 2025-11-26 23:53:51,780 | INFO     | [payload] failed_post thread has finished
[2025-11-26 18:54:27] 2025-11-26 23:53:52,332 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 18:54:27] 2025-11-26 23:53:56,355 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 18:54:27] 2025-11-26 23:54:19,565 | INFO     | PID=418467 has CPU usage=6.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-26 18:54:27] 2025-11-26 23:54:19,565 | INFO     | .. there are 84 such processes running
[2025-11-26 18:54:27] 2025-11-26 23:54:19,565 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 18:54:27] 2025-11-26 23:54:19,571 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 18:54:27] 2025-11-26 23:54:19,571 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 18:54:27] 2025-11-26 23:54:20,593 | INFO     | [monitor] cgroup control has ended
[2025-11-26 18:54:27] 2025-11-26 23:54:21,086 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140409118627648)>', '<ExcThread(monitor, started 140408612955904)>']
[2025-11-26 18:54:27] 2025-11-26 23:54:21,582 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 18:54:27] 2025-11-26 23:54:21,583 | INFO     | [monitor] control thread has ended
[2025-11-26 18:54:27] 2025-11-26 23:54:26,112 | INFO     | all workflow threads have been joined
[2025-11-26 18:54:27] 2025-11-26 23:54:26,112 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 18:54:27] 2025-11-26 23:54:26,113 | INFO     | traces error code: 0
[2025-11-26 18:54:27] 2025-11-26 23:54:26,113 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 18:54:27] 2025-11-26 23:54:26,370 [wrapper] ==== pilot stdout END ====
[2025-11-26 18:54:27] 2025-11-26 23:54:26,391 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 18:54:27] 2025-11-26 23:54:26,409 [wrapper] pilotpid: 418467
[2025-11-26 18:54:27] 2025-11-26 23:54:26,468 [wrapper] Pilot exit status: 0
[2025-11-26 18:54:27] 2025-11-26 23:54:26,574 [wrapper] pandaids: 6897373263
[2025-11-26 18:54:27] 2025-11-26 23:54:26,834 [wrapper] cleanup supervisor_pilot 1190623 418468
[2025-11-26 18:54:27] 2025-11-26 23:54:26,841 [wrapper] Test setup, not cleaning
[2025-11-26 18:54:27] 2025-11-26 23:54:26,844 [wrapper] apfmon messages muted
[2025-11-26 18:54:27] 2025-11-26 23:54:26,848 [wrapper] ==== wrapper stdout END ====
[2025-11-26 18:54:27] 2025-11-26 23:54:26,853 [wrapper] ==== wrapper stderr END ====
[2025-11-26 18:54:27]  *** Error codes and diagnostics ***
[2025-11-26 18:54:27]     "exeErrorCode": 0,
[2025-11-26 18:54:27]     "exeErrorDiag": "",
[2025-11-26 18:54:27]     "pilotErrorCode": 0,
[2025-11-26 18:54:27]     "pilotErrorDiag": "",
[2025-11-26 18:54:27]  *** Listing of results directory ***
[2025-11-26 18:54:27] total 1312236
[2025-11-26 18:54:27] -rw-r--r--. 1 boincer umatlas    576529 Nov 25 11:48 pilot3.tar.gz
[2025-11-26 18:54:27] -rw-r--r--. 1 boincer umatlas      5112 Nov 25 11:55 queuedata.json
[2025-11-26 18:54:27] -rwx------. 1 boincer umatlas     36292 Nov 25 11:57 runpilot2-wrapper.sh
[2025-11-26 18:54:27] -rw-r--r--. 1 boincer umatlas       100 Nov 25 21:46 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 18:54:27] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 25 21:46 run_atlas
[2025-11-26 18:54:27] -rw-r--r--. 1 boincer umatlas       105 Nov 25 21:46 job.xml
[2025-11-26 18:54:27] -rw-r--r--. 2 boincer umatlas 410447936 Nov 25 21:46 EVNT.47483658._002213.pool.root.1
[2025-11-26 18:54:27] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 21:46 start_atlas.sh
[2025-11-26 18:54:27] drwxrwx--x. 2 boincer umatlas      4096 Nov 25 21:46 shared
[2025-11-26 18:54:27] -rw-r--r--. 2 boincer umatlas    590112 Nov 25 21:46 input.tar.gz
[2025-11-26 18:54:27] -rw-r--r--. 1 boincer umatlas         0 Nov 25 21:46 boinc_lockfile
[2025-11-26 18:54:27] -rw-r--r--. 1 boincer umatlas      2786 Nov 25 21:46 pandaJob.out
[2025-11-26 18:54:27] -rw-------. 1 boincer umatlas        57 Nov 25 21:46 setup.sh.local
[2025-11-26 18:54:27] -rw-------. 1 boincer umatlas    991877 Nov 25 21:46 agis_schedconf.cvmfs.json
[2025-11-26 18:54:27] drwx------. 5 boincer umatlas      4096 Nov 25 21:47 pilot3
[2025-11-26 18:54:27] -rw-r--r--. 1 boincer umatlas       533 Nov 26 18:36 boinc_task_state.xml
[2025-11-26 18:54:27] -rw-r--r--. 1 boincer umatlas      6884 Nov 26 18:45 init_data.xml
[2025-11-26 18:54:27] -rw-------. 1 boincer umatlas 907096805 Nov 26 18:51 HITS.47556161._001970.pool.root.1
[2025-11-26 18:54:27] -rw-------. 1 boincer umatlas      1060 Nov 26 18:53 memory_monitor_summary.json
[2025-11-26 18:54:27] -rw-------. 1 boincer umatlas   1516240 Nov 26 18:53 agis_ddmendpoints.agis.ALL.json
[2025-11-26 18:54:27] -rw-------. 1 boincer umatlas   2271322 Nov 26 18:53 log.47556161._001970.job.log.tgz.1
[2025-11-26 18:54:27] -rw-------. 1 boincer umatlas      8621 Nov 26 18:53 heartbeat.json
[2025-11-26 18:54:27] -rw-------. 1 boincer umatlas        95 Nov 26 18:53 pilot_heartbeat.json
[2025-11-26 18:54:27] -rw-r--r--. 1 boincer umatlas      8192 Nov 26 18:54 boinc_mmap_file
[2025-11-26 18:54:27] -rw-------. 1 boincer umatlas      4823 Nov 26 18:54 pilotlog.txt
[2025-11-26 18:54:27] -rw-r--r--. 1 boincer umatlas        29 Nov 26 18:54 wrapper_checkpoint.txt
[2025-11-26 18:54:27] -rw-------. 1 boincer umatlas   8855495 Nov 26 18:54 log.47556161._001970.job.log.1
[2025-11-26 18:54:27] -rw-------. 1 boincer umatlas       353 Nov 26 18:54 output.list
[2025-11-26 18:54:27] -rw-r--r--. 1 boincer umatlas       620 Nov 26 18:54 runtime_log
[2025-11-26 18:54:27] -rw-------. 1 boincer umatlas  11151360 Nov 26 18:54 result.tar.gz
[2025-11-26 18:54:27] -rw-r--r--. 1 boincer umatlas      9343 Nov 26 18:54 runtime_log.err
[2025-11-26 18:54:27] -rw-------. 1 boincer umatlas       660 Nov 26 18:54 fk4NDm6WBi8n9Rq4apOajLDm4fhM0noT9bVo0NGKDm2ZJKDmsmaHfn.diag
[2025-11-26 18:54:27] -rw-r--r--. 1 boincer umatlas     21267 Nov 26 18:54 stderr.txt
[2025-11-26 18:54:27] HITS file was successfully produced:
[2025-11-26 18:54:27] -rw-------. 1 boincer umatlas 907096805 Nov 26 18:51 shared/HITS.pool.root.1
[2025-11-26 18:54:27]  *** Contents of shared directory: ***
[2025-11-26 18:54:27] total 1298168
[2025-11-26 18:54:27] -rw-r--r--. 2 boincer umatlas 410447936 Nov 25 21:46 ATLAS.root_0
[2025-11-26 18:54:27] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 21:46 start_atlas.sh
[2025-11-26 18:54:27] -rw-r--r--. 2 boincer umatlas    590112 Nov 25 21:46 input.tar.gz
[2025-11-26 18:54:27] -rw-------. 1 boincer umatlas 907096805 Nov 26 18:51 HITS.pool.root.1
[2025-11-26 18:54:27] -rw-------. 1 boincer umatlas  11151360 Nov 26 18:54 result.tar.gz
18:54:29 (405468): run_atlas exited; CPU time 261098.605876
18:54:29 (405468): called boinc_finish(0)

</stderr_txt>
]]>

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