Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
22:14:03 (342885): wrapper (7.7.26015): starting
22:14:03 (342885): wrapper: running run_atlas (--nthreads 8)
[2025-11-25 22:14:03] Arguments: --nthreads 8
[2025-11-25 22:14:03] Threads: 8
[2025-11-25 22:14:04] Checking for CVMFS
[2025-11-25 22:14:04] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 22:14:04] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 22:14:04] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 22:14:25] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 22:14:25] 2.13.3.0 6673 7024 254492 153306 1 285 20718400 32935936 59624 16776704 0 63493963 99.756 40489829 30545 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-25 22:14:25] CVMFS is ok
[2025-11-25 22:14:25] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 22:14:25] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 22:14:25] Further information can be found at the LHC@home message board.
[2025-11-25 22:14:25] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 22:14:25] Checking for apptainer binary...
[2025-11-25 22:14:25] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 22:14:25] Running /usr/bin/apptainer --version
[2025-11-25 22:14:25] apptainer version 1.4.4-1.el9
[2025-11-25 22:14:25] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 22:14:25] lc-10-9.aglt2.org
[2025-11-25 22:14:25] apptainer works
[2025-11-25 22:14:25] Set ATHENA_PROC_NUMBER=8
[2025-11-25 22:14:25] Set ATHENA_CORE_NUMBER=8
[2025-11-25 22:14:25] Starting ATLAS job with PandaID=6897394518
[2025-11-25 22:14:25] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 15:22:14]  *** The last 200 lines of the pilot log: ***
[2025-11-26 15:22:14] 2025-11-26 20:21:01,141 | INFO     | monitor loop #3292: job 0:6897394518 is in state 'finished'
[2025-11-26 15:22:14] 2025-11-26 20:21:01,141 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 15:22:14] 2025-11-26 20:21:02,590 | INFO     | time since job start (61549s) is within the limit (172800.0s)
[2025-11-26 15:22:14] 2025-11-26 20:21:03,651 | INFO     | monitor loop #3293: job 0:6897394518 is in state 'finished'
[2025-11-26 15:22:14] 2025-11-26 20:21:03,651 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 15:22:14] 2025-11-26 20:21:04,599 | INFO     | time since job start (61551s) is within the limit (172800.0s)
[2025-11-26 15:22:14] 2025-11-26 20:21:06,173 | INFO     | monitor loop #3294: job 0:6897394518 is in state 'finished'
[2025-11-26 15:22:14] 2025-11-26 20:21:06,173 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 15:22:14] 2025-11-26 20:21:06,649 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-26 15:22:14] 2025-11-26 20:21:06,655 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2701.96984375
[2025-11-26 15:22:14] 2025-11-26 20:21:06,686 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6897394518/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 15:22:14] 2025-11-26 20:21:06,687 | INFO     | extracted standard info from prmon json
[2025-11-26 15:22:14] 2025-11-26 20:21:06,687 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 15:22:14] 2025-11-26 20:21:06,687 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 15:22:14] 2025-11-26 20:21:06,707 | INFO     | fitting pss+swap vs Time
[2025-11-26 15:22:14] 2025-11-26 20:21:06,708 | INFO     | sum of square deviations: 316643743411.0593
[2025-11-26 15:22:14] 2025-11-26 20:21:06,736 | INFO     | sum of deviations: 1180179062052.98
[2025-11-26 15:22:14] 2025-11-26 20:21:06,737 | INFO     | mean x: 1764157687.937438
[2025-11-26 15:22:14] 2025-11-26 20:21:06,737 | INFO     | mean y: 2885221.6663356503
[2025-11-26 15:22:14] 2025-11-26 20:21:06,737 | INFO     | intersect: -6572396964.663581
[2025-11-26 15:22:14] 2025-11-26 20:21:06,738 | INFO     | chi2: 12.00496630213391
[2025-11-26 15:22:14] 2025-11-26 20:21:06,740 | INFO     | sum of square deviations: 311951063323.58856
[2025-11-26 15:22:14] 2025-11-26 20:21:06,776 | INFO     | sum of deviations: 1508342205271.059
[2025-11-26 15:22:14] 2025-11-26 20:21:06,777 | INFO     | mean x: 1764157535.4461079
[2025-11-26 15:22:14] 2025-11-26 20:21:06,777 | INFO     | mean y: 2895885.630738523
[2025-11-26 15:22:14] 2025-11-26 20:21:06,777 | INFO     | intersect: -8527138405.998258
[2025-11-26 15:22:14] 2025-11-26 20:21:06,778 | INFO     | chi2: 9.040466028460472
[2025-11-26 15:22:14] 2025-11-26 20:21:06,781 | INFO     | current chi2=9.040466028460472 (change=24.69394914625035 %)
[2025-11-26 15:22:14] 2025-11-26 20:21:06,781 | INFO     | right removable region: 1001
[2025-11-26 15:22:14] 2025-11-26 20:21:06,782 | INFO     | sum of square deviations: 311949934759.6972
[2025-11-26 15:22:14] 2025-11-26 20:21:06,874 | INFO     | sum of deviations: 797091966497.3563
[2025-11-26 15:22:14] 2025-11-26 20:21:06,874 | INFO     | mean x: 1764157840.447106
[2025-11-26 15:22:14] 2025-11-26 20:21:06,874 | INFO     | mean y: 2897665.4500998002
[2025-11-26 15:22:14] 2025-11-26 20:21:06,875 | INFO     | intersect: -4504864271.852245
[2025-11-26 15:22:14] 2025-11-26 20:21:06,876 | INFO     | chi2: 8.290767651103584
[2025-11-26 15:22:14] 2025-11-26 20:21:06,876 | INFO     | current chi2=8.290767651103584 (change=30.938851118391884 %)
[2025-11-26 15:22:14] 2025-11-26 20:21:06,912 | INFO     | sum of square deviations: 307302914641.8779
[2025-11-26 15:22:14] 2025-11-26 20:21:07,111 | INFO     | sum of deviations: 657498901828.6155
[2025-11-26 15:22:14] 2025-11-26 20:21:07,112 | INFO     | mean x: 1764157992.9538615
[2025-11-26 15:22:14] 2025-11-26 20:21:07,112 | INFO     | mean y: 2902240.1003009025
[2025-11-26 15:22:14] 2025-11-26 20:21:07,112 | INFO     | intersect: -3771653378.3229413
[2025-11-26 15:22:14] 2025-11-26 20:21:07,168 | INFO     | chi2: 7.722753593315823
[2025-11-26 15:22:14] 2025-11-26 20:21:07,168 | INFO     | current chi2=7.722753593315823 (change=6.851163627919939 %)
[2025-11-26 15:22:14] 2025-11-26 20:21:07,168 | INFO     | left removable region: 20
[2025-11-26 15:22:14] 2025-11-26 20:21:07,170 | INFO     | sum of square deviations: 292744680354.02106
[2025-11-26 15:22:14] 2025-11-26 20:21:07,243 | INFO     | PID=354486 has CPU usage=4.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-26 15:22:14] 2025-11-26 20:21:07,243 | INFO     | .. there are 88 such processes running
[2025-11-26 15:22:14] 2025-11-26 20:21:07,264 | INFO     | sum of deviations: 979070916453.9513
[2025-11-26 15:22:14] 2025-11-26 20:21:07,264 | INFO     | mean x: 1764158114.9683995
[2025-11-26 15:22:14] 2025-11-26 20:21:07,264 | INFO     | mean y: 2918570.2242609584
[2025-11-26 15:22:14] 2025-11-26 20:21:07,264 | INFO     | intersect: -5897225884.332559
[2025-11-26 15:22:14] 2025-11-26 20:21:07,265 | INFO     | chi2: 3.8473057339659222
[2025-11-26 15:22:14] 2025-11-26 20:21:07,266 | INFO     | current memory leak: 3.34 B/s (using 981 data points, chi2=3.85)
[2025-11-26 15:22:14] 2025-11-26 20:21:07,280 | INFO     | could have reported an average CPU frequency of 2700 MHz (37 samples)
[2025-11-26 15:22:14] 2025-11-26 20:21:07,280 | INFO     | ..............................
[2025-11-26 15:22:14] 2025-11-26 20:21:07,280 | INFO     | . Timing measurements:
[2025-11-26 15:22:14] 2025-11-26 20:21:07,280 | INFO     | . get job = 0 s
[2025-11-26 15:22:14] 2025-11-26 20:21:07,280 | INFO     | . initial setup = 3 s
[2025-11-26 15:22:14] 2025-11-26 20:21:07,280 | INFO     | . payload setup = 27 s
[2025-11-26 15:22:14] 2025-11-26 20:21:07,280 | INFO     | . stage-in = 0 s
[2025-11-26 15:22:14] 2025-11-26 20:21:07,280 | INFO     | . payload execution = 61445 s
[2025-11-26 15:22:14] 2025-11-26 20:21:07,280 | INFO     | . stage-out = 6 s
[2025-11-26 15:22:14] 2025-11-26 20:21:07,280 | INFO     | . log creation = 1 s
[2025-11-26 15:22:14] 2025-11-26 20:21:07,281 | INFO     | ..............................
[2025-11-26 15:22:14] 2025-11-26 20:21:07,561 | INFO     | 
[2025-11-26 15:22:14] 2025-11-26 20:21:07,561 | INFO     | job summary report
[2025-11-26 15:22:14] 2025-11-26 20:21:07,561 | INFO     | --------------------------------------------------
[2025-11-26 15:22:14] 2025-11-26 20:21:07,561 | INFO     | PanDA job id: 6897394518
[2025-11-26 15:22:14] 2025-11-26 20:21:07,561 | INFO     | task id: 47556161
[2025-11-26 15:22:14] 2025-11-26 20:21:07,561 | INFO     | errors: (none)
[2025-11-26 15:22:14] 2025-11-26 20:21:07,561 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 15:22:14] 2025-11-26 20:21:07,561 | INFO     | pilot state: finished 
[2025-11-26 15:22:14] 2025-11-26 20:21:07,561 | INFO     | transexitcode: 0
[2025-11-26 15:22:14] 2025-11-26 20:21:07,562 | INFO     | exeerrorcode: 0
[2025-11-26 15:22:14] 2025-11-26 20:21:07,562 | INFO     | exeerrordiag: 
[2025-11-26 15:22:14] 2025-11-26 20:21:07,562 | INFO     | exitcode: 0
[2025-11-26 15:22:14] 2025-11-26 20:21:07,562 | INFO     | exitmsg: OK
[2025-11-26 15:22:14] 2025-11-26 20:21:07,562 | INFO     | cpuconsumptiontime: 258625 s
[2025-11-26 15:22:14] 2025-11-26 20:21:07,562 | INFO     | nevents: 1000
[2025-11-26 15:22:14] 2025-11-26 20:21:07,562 | INFO     | neventsw: 0
[2025-11-26 15:22:14] 2025-11-26 20:21:07,562 | INFO     | pid: 378098
[2025-11-26 15:22:14] 2025-11-26 20:21:07,562 | INFO     | pgrp: 378098
[2025-11-26 15:22:14] 2025-11-26 20:21:07,562 | INFO     | corecount: 8
[2025-11-26 15:22:14] 2025-11-26 20:21:07,562 | INFO     | event service: False
[2025-11-26 15:22:14] 2025-11-26 20:21:07,562 | INFO     | sizes: {0: 2284038, 1: 2284293, 2: 2284293, 12: 2284321, 21: 2284611, 23: 2284639, 61476: 2337319, 61483: 2346313, 61484: 2346369, 61511: 2346615}
[2025-11-26 15:22:14] 2025-11-26 20:21:07,563 | INFO     | --------------------------------------------------
[2025-11-26 15:22:14] 2025-11-26 20:21:07,563 | INFO     | 
[2025-11-26 15:22:14] 2025-11-26 20:21:07,563 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-11-26 15:22:14] 2025-11-26 20:21:07,891 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 15:22:14] 2025-11-26 20:21:07,891 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 15:22:14] 2025-11-26 20:21:07,891 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 15:22:14] 2025-11-26 20:21:07,891 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 15:22:14] 2025-11-26 20:21:07,891 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 15:22:14] 2025-11-26 20:21:07,891 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 15:22:14] 2025-11-26 20:21:07,892 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 15:22:14] 2025-11-26 20:21:07,892 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 15:22:14] 2025-11-26 20:21:07,892 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 15:22:14] 2025-11-26 20:21:07,892 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 15:22:14] 2025-11-26 20:21:07,892 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 15:22:14] 2025-11-26 20:21:07,892 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 15:22:14] 2025-11-26 20:21:07,892 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 15:22:14] 2025-11-26 20:21:07,892 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 15:22:14] 2025-11-26 20:21:07,892 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 15:22:14] 2025-11-26 20:21:07,892 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 15:22:14] 2025-11-26 20:21:07,892 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 15:22:14] 2025-11-26 20:21:07,893 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 15:22:14] 2025-11-26 20:21:07,893 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 15:22:14] 2025-11-26 20:21:07,893 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 15:22:14] 2025-11-26 20:21:07,895 | INFO     | job 6897394518 has completed (purged errors)
[2025-11-26 15:22:14] 2025-11-26 20:21:07,896 | INFO     | overall cleanup function is called
[2025-11-26 15:22:14] 2025-11-26 20:21:08,914 | INFO     | --- collectZombieJob: --- 10, [378098]
[2025-11-26 15:22:14] 2025-11-26 20:21:08,914 | INFO     | zombie collector waiting for pid 378098
[2025-11-26 15:22:14] 2025-11-26 20:21:08,914 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 15:22:14] 2025-11-26 20:21:08,915 | INFO     | collected zombie processes
[2025-11-26 15:22:14] 2025-11-26 20:21:08,915 | INFO     | will attempt to kill all subprocesses of pid=378098
[2025-11-26 15:22:14] 2025-11-26 20:21:10,121 | INFO     | process IDs to be killed: [378098] (in reverse order)
[2025-11-26 15:22:14] 2025-11-26 20:21:10,512 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 15:22:14] 2025-11-26 20:21:10,513 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 15:22:14] 2025-11-26 20:21:10,685 | INFO     | did not find any defunct processes belonging to 378098
[2025-11-26 15:22:14] 2025-11-26 20:21:10,780 | INFO     | did not find any defunct processes belonging to 378098
[2025-11-26 15:22:14] 2025-11-26 20:21:10,802 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 15:22:14] 2025-11-26 20:21:10,803 | INFO     | ready for new job
[2025-11-26 15:22:14] 2025-11-26 20:21:10,803 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 15:22:14] 2025-11-26 20:21:10,819 | INFO     | ***************************************
[2025-11-26 15:22:14] 2025-11-26 20:21:10,819 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 15:22:14] 2025-11-26 20:21:10,819 | INFO     | ***************************************
[2025-11-26 15:22:14] 2025-11-26 20:21:10,819 | INFO     | 
[2025-11-26 15:22:14] 2025-11-26 20:21:10,835 | INFO     | architecture information:
[2025-11-26 15:22:14] 2025-11-26 20:21:10,835 | INFO     | executing command: cat /etc/os-release
[2025-11-26 15:22:14] 2025-11-26 20:21:10,916 | INFO     | cat /etc/os-release:
[2025-11-26 15:22:14] NAME="CentOS Linux"
[2025-11-26 15:22:14] VERSION="7 (Core)"
[2025-11-26 15:22:14] ID="centos"
[2025-11-26 15:22:14] ID_LIKE="rhel fedora"
[2025-11-26 15:22:14] VERSION_ID="7"
[2025-11-26 15:22:14] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 15:22:14] ANSI_COLOR="0;31"
[2025-11-26 15:22:14] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 15:22:14] HOME_URL="https://www.centos.org/"
[2025-11-26 15:22:14] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 15:22:14] 
[2025-11-26 15:22:14] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 15:22:14] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 15:22:14] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 15:22:14] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 15:22:14] 
[2025-11-26 15:22:14] 2025-11-26 20:21:10,917 | INFO     | ***************************************
[2025-11-26 15:22:14] 2025-11-26 20:21:11,419 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-11-26 15:22:14] 2025-11-26 20:21:11,592 | INFO     | sufficient remaining disk space (84298170368 B)
[2025-11-26 15:22:14] 2025-11-26 20:21:11,592 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 15:22:14] 2025-11-26 20:21:11,592 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 15:22:14] 2025-11-26 20:21:11,592 | INFO     | update_server=False
[2025-11-26 15:22:14] 2025-11-26 20:21:11,592 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 15:22:14] 2025-11-26 20:21:11,593 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 15:22:14] 2025-11-26 20:21:12,003 | INFO     | all job control threads have been joined
[2025-11-26 15:22:14] 2025-11-26 20:21:12,003 | INFO     | all payload control threads have been joined
[2025-11-26 15:22:14] 2025-11-26 20:21:12,188 | INFO     | all data control threads have been joined
[2025-11-26 15:22:14] 2025-11-26 20:21:12,221 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 15:22:14] 2025-11-26 20:21:12,221 | INFO     | aborting loop
[2025-11-26 15:22:14] 2025-11-26 20:21:12,584 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 15:22:14] 2025-11-26 20:21:12,598 | INFO     | [job] retrieve thread has finished
[2025-11-26 15:22:14] 2025-11-26 20:21:12,681 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 15:22:14] 2025-11-26 20:21:12,727 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 15:22:14] 2025-11-26 20:21:12,770 | INFO     | [data] copytool_in thread has finished
[2025-11-26 15:22:14] 2025-11-26 20:21:13,011 | INFO     | [job] control thread has finished
[2025-11-26 15:22:14] 2025-11-26 20:21:13,012 | INFO     | [payload] control thread has finished
[2025-11-26 15:22:14] 2025-11-26 20:21:13,194 | INFO     | [data] control thread has finished
[2025-11-26 15:22:14] 2025-11-26 20:21:13,227 | INFO     | [job] job monitor thread has finished
[2025-11-26 15:22:14] 2025-11-26 20:21:13,481 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 15:22:14] 2025-11-26 20:21:13,590 | INFO     | [job] queue monitor thread has finished
[2025-11-26 15:22:14] 2025-11-26 20:21:13,600 | INFO     | [data] copytool_out thread has finished
[2025-11-26 15:22:14] 2025-11-26 20:21:13,626 | INFO     | [payload] validate_post thread has finished
[2025-11-26 15:22:14] 2025-11-26 20:21:13,676 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 15:22:14] 2025-11-26 20:21:13,708 | INFO     | [job] validate thread has finished
[2025-11-26 15:22:14] 2025-11-26 20:21:13,809 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 15:22:14] 2025-11-26 20:21:14,091 | INFO     | [payload] failed_post thread has finished
[2025-11-26 15:22:14] 2025-11-26 20:21:17,817 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 15:22:14] 2025-11-26 20:21:40,694 | INFO     | PID=354486 has CPU usage=6.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-26 15:22:14] 2025-11-26 20:21:40,694 | INFO     | .. there are 88 such processes running
[2025-11-26 15:22:14] 2025-11-26 20:21:40,695 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 15:22:14] 2025-11-26 20:21:40,695 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 15:22:14] 2025-11-26 20:21:40,695 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 15:22:14] 2025-11-26 20:22:05,827 | INFO     | [monitor] cgroup control has ended
[2025-11-26 15:22:14] 2025-11-26 20:22:07,460 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140249821005632)>', '<ExcThread(monitor, started 140249338476288)>']
[2025-11-26 15:22:14] 2025-11-26 20:22:07,906 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 15:22:14] 2025-11-26 20:22:07,906 | INFO     | [monitor] control thread has ended
[2025-11-26 15:22:14] 2025-11-26 20:22:12,486 | INFO     | all workflow threads have been joined
[2025-11-26 15:22:14] 2025-11-26 20:22:12,486 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 15:22:14] 2025-11-26 20:22:12,487 | INFO     | traces error code: 0
[2025-11-26 15:22:14] 2025-11-26 20:22:12,487 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 15:22:14] 2025-11-26 20:22:13,596 [wrapper] ==== pilot stdout END ====
[2025-11-26 15:22:14] 2025-11-26 20:22:13,606 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 15:22:14] 2025-11-26 20:22:13,622 [wrapper] pilotpid: 354486
[2025-11-26 15:22:14] 2025-11-26 20:22:13,654 [wrapper] Pilot exit status: 0
[2025-11-26 15:22:14] 2025-11-26 20:22:13,709 [wrapper] pandaids: 6897394518
[2025-11-26 15:22:14] 2025-11-26 20:22:13,902 [wrapper] cleanup supervisor_pilot 2465938 354487
[2025-11-26 15:22:14] 2025-11-26 20:22:13,911 [wrapper] Test setup, not cleaning
[2025-11-26 15:22:14] 2025-11-26 20:22:13,937 [wrapper] apfmon messages muted
[2025-11-26 15:22:14] 2025-11-26 20:22:13,945 [wrapper] ==== wrapper stdout END ====
[2025-11-26 15:22:14] 2025-11-26 20:22:13,953 [wrapper] ==== wrapper stderr END ====
[2025-11-26 15:22:14]  *** Error codes and diagnostics ***
[2025-11-26 15:22:14]     "exeErrorCode": 0,
[2025-11-26 15:22:14]     "exeErrorDiag": "",
[2025-11-26 15:22:14]     "pilotErrorCode": 0,
[2025-11-26 15:22:14]     "pilotErrorDiag": "",
[2025-11-26 15:22:14]  *** Listing of results directory ***
[2025-11-26 15:22:14] total 1326160
[2025-11-26 15:22:14] -rw-r--r--. 1 boincer umatlas    576529 Nov 25 11:48 pilot3.tar.gz
[2025-11-26 15:22:14] -rw-r--r--. 1 boincer umatlas      5112 Nov 25 11:55 queuedata.json
[2025-11-26 15:22:14] -rwx------. 1 boincer umatlas     36292 Nov 25 11:57 runpilot2-wrapper.sh
[2025-11-26 15:22:14] -rw-r--r--. 1 boincer umatlas       100 Nov 25 22:14 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 15:22:14] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 25 22:14 run_atlas
[2025-11-26 15:22:14] -rw-r--r--. 1 boincer umatlas       105 Nov 25 22:14 job.xml
[2025-11-26 15:22:14] -rw-r--r--. 2 boincer umatlas 411947493 Nov 25 22:14 EVNT.47483658._002222.pool.root.1
[2025-11-26 15:22:14] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 22:14 start_atlas.sh
[2025-11-26 15:22:14] drwxrwx--x. 2 boincer umatlas      4096 Nov 25 22:14 shared
[2025-11-26 15:22:14] -rw-r--r--. 2 boincer umatlas    590107 Nov 25 22:14 input.tar.gz
[2025-11-26 15:22:14] -rw-r--r--. 1 boincer umatlas         0 Nov 25 22:14 boinc_lockfile
[2025-11-26 15:22:14] -rw-r--r--. 1 boincer umatlas      2786 Nov 25 22:14 pandaJob.out
[2025-11-26 15:22:14] -rw-------. 1 boincer umatlas        57 Nov 25 22:14 setup.sh.local
[2025-11-26 15:22:14] -rw-------. 1 boincer umatlas    991877 Nov 25 22:15 agis_schedconf.cvmfs.json
[2025-11-26 15:22:14] drwx------. 5 boincer umatlas      4096 Nov 25 22:15 pilot3
[2025-11-26 15:22:14] -rw-r--r--. 1 boincer umatlas       533 Nov 26 15:02 boinc_task_state.xml
[2025-11-26 15:22:14] -rw-r--r--. 1 boincer umatlas      6887 Nov 26 15:18 init_data.xml
[2025-11-26 15:22:14] -rw-------. 1 boincer umatlas 923366278 Nov 26 15:19 HITS.47556161._002056.pool.root.1
[2025-11-26 15:22:14] -rw-------. 1 boincer umatlas      1059 Nov 26 15:20 memory_monitor_summary.json
[2025-11-26 15:22:14] -rw-------. 1 boincer umatlas   1516240 Nov 26 15:20 agis_ddmendpoints.agis.ALL.json
[2025-11-26 15:22:14] -rw-------. 1 boincer umatlas   2113643 Nov 26 15:20 log.47556161._002056.job.log.tgz.1
[2025-11-26 15:22:14] -rw-------. 1 boincer umatlas      8618 Nov 26 15:21 heartbeat.json
[2025-11-26 15:22:14] -rw-------. 1 boincer umatlas        95 Nov 26 15:21 pilot_heartbeat.json
[2025-11-26 15:22:14] -rw-r--r--. 1 boincer umatlas      8192 Nov 26 15:22 boinc_mmap_file
[2025-11-26 15:22:14] -rw-r--r--. 1 boincer umatlas        29 Nov 26 15:22 wrapper_checkpoint.txt
[2025-11-26 15:22:14] -rw-------. 1 boincer umatlas      4823 Nov 26 15:22 pilotlog.txt
[2025-11-26 15:22:14] -rw-------. 1 boincer umatlas   7259045 Nov 26 15:22 log.47556161._002056.job.log.1
[2025-11-26 15:22:14] -rw-------. 1 boincer umatlas       353 Nov 26 15:22 output.list
[2025-11-26 15:22:14] -rw-r--r--. 1 boincer umatlas       620 Nov 26 15:22 runtime_log
[2025-11-26 15:22:14] -rw-------. 1 boincer umatlas   9390080 Nov 26 15:22 result.tar.gz
[2025-11-26 15:22:14] -rw-r--r--. 1 boincer umatlas      9338 Nov 26 15:22 runtime_log.err
[2025-11-26 15:22:14] -rw-------. 1 boincer umatlas       659 Nov 26 15:22 6y1LDmDXBi8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm6UMKDmCl1Xpm.diag
[2025-11-26 15:22:14] -rw-r--r--. 1 boincer umatlas     21636 Nov 26 15:22 stderr.txt
[2025-11-26 15:22:14] HITS file was successfully produced:
[2025-11-26 15:22:14] -rw-------. 1 boincer umatlas 923366278 Nov 26 15:19 shared/HITS.pool.root.1
[2025-11-26 15:22:14]  *** Contents of shared directory: ***
[2025-11-26 15:22:14] total 1313800
[2025-11-26 15:22:14] -rw-r--r--. 2 boincer umatlas 411947493 Nov 25 22:14 ATLAS.root_0
[2025-11-26 15:22:14] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 22:14 start_atlas.sh
[2025-11-26 15:22:14] -rw-r--r--. 2 boincer umatlas    590107 Nov 25 22:14 input.tar.gz
[2025-11-26 15:22:14] -rw-------. 1 boincer umatlas 923366278 Nov 26 15:19 HITS.pool.root.1
[2025-11-26 15:22:14] -rw-------. 1 boincer umatlas   9390080 Nov 26 15:22 result.tar.gz
15:22:16 (342885): run_atlas exited; CPU time 261996.623709
15:22:16 (342885): called boinc_finish(0)

</stderr_txt>
]]>

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