Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:00:51 (2839582): wrapper (7.7.26015): starting
00:00:51 (2839582): wrapper: running run_atlas (--nthreads 8)
[2025-11-26 00:00:51] Arguments: --nthreads 8
[2025-11-26 00:00:51] Threads: 8
[2025-11-26 00:00:51] Checking for CVMFS
[2025-11-26 00:00:51] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 00:00:51] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 00:00:51] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 00:00:52] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 00:00:52] 2.13.3.0 11379 29603 326312 153309 2 188 30935142 32935937 28653 16776704 0 105876033 99.424 151852388 39327 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-26 00:00:52] CVMFS is ok
[2025-11-26 00:00:52] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 00:00:52] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 00:00:52] Further information can be found at the LHC@home message board.
[2025-11-26 00:00:52] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 00:00:52] Checking for apptainer binary...
[2025-11-26 00:00:52] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 00:00:52] Running /usr/bin/apptainer --version
[2025-11-26 00:00:52] apptainer version 1.4.4-1.el9
[2025-11-26 00:00:52] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 00:00:52] c6-4-5-1.aglt2.org
[2025-11-26 00:00:52] apptainer works
[2025-11-26 00:00:52] Set ATHENA_PROC_NUMBER=8
[2025-11-26 00:00:52] Set ATHENA_CORE_NUMBER=8
[2025-11-26 00:00:52] Starting ATLAS job with PandaID=6897139522
[2025-11-26 00:00:52] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
16:40:09 (2839582): BOINC client no longer exists - exiting
16:40:09 (2839582): timer handler: client dead, exiting
16:45:53 (3306069): wrapper (7.7.26015): starting
16:45:53 (3306069): wrapper: running run_atlas (--nthreads 8)
[2025-11-26 16:45:53] Arguments: --nthreads 8
[2025-11-26 16:45:53] Threads: 8
[2025-11-26 16:45:53] This job has been restarted, cleaning up previous attempt
[2025-11-26 16:45:54] Checking for CVMFS
[2025-11-26 16:45:54] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 16:45:54] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 16:45:54] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 16:45:54] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 16:45:54] 2.13.3.0 11379 30608 329344 153335 2 451 18584503 32935936 28735 16776704 0 113219722 99.439 158163117 39170 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-26 16:45:54] CVMFS is ok
[2025-11-26 16:45:54] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 16:45:54] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 16:45:54] Further information can be found at the LHC@home message board.
[2025-11-26 16:45:54] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 16:45:54] Checking for apptainer binary...
[2025-11-26 16:45:54] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 16:45:54] Running /usr/bin/apptainer --version
[2025-11-26 16:45:54] apptainer version 1.4.4-1.el9
[2025-11-26 16:45:54] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 16:45:54] c6-4-5-1.aglt2.org
[2025-11-26 16:45:54] apptainer works
[2025-11-26 16:45:54] Set ATHENA_PROC_NUMBER=8
[2025-11-26 16:45:54] Set ATHENA_CORE_NUMBER=8
[2025-11-26 16:45:54] Starting ATLAS job with PandaID=6897139522
[2025-11-26 16:45:54] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 07:57:50]  *** The last 200 lines of the pilot log: ***
[2025-11-27 07:57:50] 2025-11-27 12:56:40,518 | INFO     | monitor loop #3294: job 0:6897139522 is in state 'finished'
[2025-11-27 07:57:50] 2025-11-27 12:56:40,519 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 07:57:50] 2025-11-27 12:56:42,301 | INFO     | time since job start (54638s) is within the limit (172800.0s)
[2025-11-27 07:57:50] 2025-11-27 12:56:42,859 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-27 07:57:50] 2025-11-27 12:56:42,863 | INFO     | found 32 cores (16 cores per socket, 2 sockets) HT, CPU MHz: 2987.4957656250003
[2025-11-27 07:57:50] 2025-11-27 12:56:42,874 | INFO     | using path: /tmp/boinchome/slots/3/PanDA_Pilot-6897139522/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 07:57:50] 2025-11-27 12:56:42,874 | INFO     | extracted standard info from prmon json
[2025-11-27 07:57:50] 2025-11-27 12:56:42,875 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 07:57:50] 2025-11-27 12:56:42,875 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 07:57:50] 2025-11-27 12:56:42,890 | INFO     | fitting pss+swap vs Time
[2025-11-27 07:57:50] 2025-11-27 12:56:42,909 | INFO     | sum of square deviations: 222298967299.79858
[2025-11-27 07:57:50] 2025-11-27 12:56:42,935 | INFO     | sum of deviations: 1408808052625.6343
[2025-11-27 07:57:50] 2025-11-27 12:56:42,936 | INFO     | mean x: 1764220858.7988827
[2025-11-27 07:57:50] 2025-11-27 12:56:42,936 | INFO     | mean y: 2888327.031284916
[2025-11-27 07:57:50] 2025-11-27 12:56:42,936 | INFO     | intersect: -11177768887.331898
[2025-11-27 07:57:50] 2025-11-27 12:56:42,937 | INFO     | chi2: 5.79294239076765
[2025-11-27 07:57:50] 2025-11-27 12:56:42,939 | INFO     | sum of square deviations: 218594467936.02817
[2025-11-27 07:57:50] 2025-11-27 12:56:42,954 | INFO     | sum of deviations: 1730425225760.6753
[2025-11-27 07:57:50] 2025-11-27 12:56:42,954 | INFO     | mean x: 1764220706.3089888
[2025-11-27 07:57:50] 2025-11-27 12:56:42,954 | INFO     | mean y: 2901566.215730337
[2025-11-27 07:57:50] 2025-11-27 12:56:42,954 | INFO     | intersect: -13962923108.266926
[2025-11-27 07:57:50] 2025-11-27 12:56:42,955 | INFO     | chi2: 2.2735760025765925
[2025-11-27 07:57:50] 2025-11-27 12:56:42,956 | INFO     | current chi2=2.2735760025765925 (change=60.752656435871955 %)
[2025-11-27 07:57:50] 2025-11-27 12:56:42,957 | INFO     | sum of square deviations: 214931093624.23734
[2025-11-27 07:57:50] 2025-11-27 12:56:42,971 | INFO     | sum of deviations: 1753628123236.6587
[2025-11-27 07:57:50] 2025-11-27 12:56:42,971 | INFO     | mean x: 1764220553.8135593
[2025-11-27 07:57:50] 2025-11-27 12:56:42,971 | INFO     | mean y: 2902526.094915254
[2025-11-27 07:57:50] 2025-11-27 12:56:42,971 | INFO     | intersect: -14391416725.676344
[2025-11-27 07:57:50] 2025-11-27 12:56:42,972 | INFO     | chi2: 2.132724905300747
[2025-11-27 07:57:50] 2025-11-27 12:56:42,972 | INFO     | current chi2=2.132724905300747 (change=6.195134761988264 %)
[2025-11-27 07:57:50] 2025-11-27 12:56:42,972 | INFO     | right removable region: 884
[2025-11-27 07:57:50] 2025-11-27 12:56:42,973 | INFO     | sum of square deviations: 218593866781.29965
[2025-11-27 07:57:50] 2025-11-27 12:56:42,988 | INFO     | sum of deviations: 1198591377347.8247
[2025-11-27 07:57:50] 2025-11-27 12:56:42,988 | INFO     | mean x: 1764221011.3011236
[2025-11-27 07:57:50] 2025-11-27 12:56:42,988 | INFO     | mean y: 2896964.5752808987
[2025-11-27 07:57:50] 2025-11-27 12:56:42,988 | INFO     | intersect: -9670659402.845568
[2025-11-27 07:57:50] 2025-11-27 12:56:42,989 | INFO     | chi2: 4.04479406502402
[2025-11-27 07:57:50] 2025-11-27 12:56:42,989 | INFO     | current chi2=4.04479406502402 (change=30.17720888316955 %)
[2025-11-27 07:57:50] 2025-11-27 12:56:42,990 | INFO     | sum of square deviations: 214930543891.98233
[2025-11-27 07:57:50] 2025-11-27 12:56:43,004 | INFO     | sum of deviations: 1123343731048.1501
[2025-11-27 07:57:50] 2025-11-27 12:56:43,005 | INFO     | mean x: 1764221163.7954803
[2025-11-27 07:57:50] 2025-11-27 12:56:43,005 | INFO     | mean y: 2900096.3875706214
[2025-11-27 07:57:50] 2025-11-27 12:56:43,005 | INFO     | intersect: -9217877689.054276
[2025-11-27 07:57:50] 2025-11-27 12:56:43,006 | INFO     | chi2: 3.9448640350052386
[2025-11-27 07:57:50] 2025-11-27 12:56:43,006 | INFO     | current chi2=3.9448640350052386 (change=2.4705838767637807 %)
[2025-11-27 07:57:50] 2025-11-27 12:56:43,006 | INFO     | left removable region: 20
[2025-11-27 07:57:50] 2025-11-27 12:56:43,007 | INFO     | sum of square deviations: 199991517509.35965
[2025-11-27 07:57:50] 2025-11-27 12:56:43,020 | INFO     | sum of deviations: 1358673525754.5625
[2025-11-27 07:57:50] 2025-11-27 12:56:43,021 | INFO     | mean x: 1764221133.2997684
[2025-11-27 07:57:50] 2025-11-27 12:56:43,021 | INFO     | mean y: 2918993.306712963
[2025-11-27 07:57:50] 2025-11-27 12:56:43,021 | INFO     | intersect: -11982592078.576254
[2025-11-27 07:57:50] 2025-11-27 12:56:43,022 | INFO     | chi2: 0.20875302612757357
[2025-11-27 07:57:50] 2025-11-27 12:56:43,022 | INFO     | current memory leak: 6.79 B/s (using 864 data points, chi2=0.21)
[2025-11-27 07:57:50] 2025-11-27 12:56:43,024 | INFO     | could have reported an average CPU frequency of 3021 MHz (33 samples)
[2025-11-27 07:57:50] 2025-11-27 12:56:43,024 | INFO     | ..............................
[2025-11-27 07:57:50] 2025-11-27 12:56:43,024 | INFO     | . Timing measurements:
[2025-11-27 07:57:50] 2025-11-27 12:56:43,024 | INFO     | . get job = 0 s
[2025-11-27 07:57:50] 2025-11-27 12:56:43,024 | INFO     | . initial setup = 2 s
[2025-11-27 07:57:50] 2025-11-27 12:56:43,024 | INFO     | . payload setup = 5 s
[2025-11-27 07:57:50] 2025-11-27 12:56:43,024 | INFO     | . stage-in = 0 s
[2025-11-27 07:57:50] 2025-11-27 12:56:43,025 | INFO     | . payload execution = 54595 s
[2025-11-27 07:57:50] 2025-11-27 12:56:43,025 | INFO     | . stage-out = 3 s
[2025-11-27 07:57:50] 2025-11-27 12:56:43,025 | INFO     | . log creation = 0 s
[2025-11-27 07:57:50] 2025-11-27 12:56:43,025 | INFO     | ..............................
[2025-11-27 07:57:50] 2025-11-27 12:56:43,114 | INFO     | 
[2025-11-27 07:57:50] 2025-11-27 12:56:43,114 | INFO     | job summary report
[2025-11-27 07:57:50] 2025-11-27 12:56:43,114 | INFO     | --------------------------------------------------
[2025-11-27 07:57:50] 2025-11-27 12:56:43,114 | INFO     | PanDA job id: 6897139522
[2025-11-27 07:57:50] 2025-11-27 12:56:43,114 | INFO     | task id: 47556161
[2025-11-27 07:57:50] 2025-11-27 12:56:43,114 | INFO     | errors: (none)
[2025-11-27 07:57:50] 2025-11-27 12:56:43,114 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 07:57:50] 2025-11-27 12:56:43,114 | INFO     | pilot state: finished 
[2025-11-27 07:57:50] 2025-11-27 12:56:43,115 | INFO     | transexitcode: 0
[2025-11-27 07:57:50] 2025-11-27 12:56:43,115 | INFO     | exeerrorcode: 0
[2025-11-27 07:57:50] 2025-11-27 12:56:43,115 | INFO     | exeerrordiag: 
[2025-11-27 07:57:50] 2025-11-27 12:56:43,115 | INFO     | exitcode: 0
[2025-11-27 07:57:50] 2025-11-27 12:56:43,115 | INFO     | exitmsg: OK
[2025-11-27 07:57:50] 2025-11-27 12:56:43,115 | INFO     | cpuconsumptiontime: 240572 s
[2025-11-27 07:57:50] 2025-11-27 12:56:43,115 | INFO     | nevents: 1000
[2025-11-27 07:57:50] 2025-11-27 12:56:43,115 | INFO     | neventsw: 0
[2025-11-27 07:57:50] 2025-11-27 12:56:43,115 | INFO     | pid: 3365194
[2025-11-27 07:57:50] 2025-11-27 12:56:43,115 | INFO     | pgrp: 3365194
[2025-11-27 07:57:50] 2025-11-27 12:56:43,115 | INFO     | corecount: 8
[2025-11-27 07:57:50] 2025-11-27 12:56:43,115 | INFO     | event service: False
[2025-11-27 07:57:50] 2025-11-27 12:56:43,115 | INFO     | sizes: {0: 2284265, 4: 2284527, 11: 2284555, 54604: 2334313, 54605: 2334312, 54610: 2343362, 54614: 2343546, 54624: 2343856}
[2025-11-27 07:57:50] 2025-11-27 12:56:43,115 | INFO     | --------------------------------------------------
[2025-11-27 07:57:50] 2025-11-27 12:56:43,115 | INFO     | 
[2025-11-27 07:57:50] 2025-11-27 12:56:43,116 | INFO     | executing command: ls -lF /tmp/boinchome/slots/3
[2025-11-27 07:57:50] 2025-11-27 12:56:43,145 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 07:57:50] 2025-11-27 12:56:43,145 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 07:57:50] 2025-11-27 12:56:43,145 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 07:57:50] 2025-11-27 12:56:43,145 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 07:57:50] 2025-11-27 12:56:43,145 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 07:57:50] 2025-11-27 12:56:43,145 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 07:57:50] 2025-11-27 12:56:43,145 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 07:57:50] 2025-11-27 12:56:43,145 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 07:57:50] 2025-11-27 12:56:43,145 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 07:57:50] 2025-11-27 12:56:43,146 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 07:57:50] 2025-11-27 12:56:43,146 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 07:57:50] 2025-11-27 12:56:43,146 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 07:57:50] 2025-11-27 12:56:43,146 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 07:57:50] 2025-11-27 12:56:43,146 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 07:57:50] 2025-11-27 12:56:43,146 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 07:57:50] 2025-11-27 12:56:43,146 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 07:57:50] 2025-11-27 12:56:43,146 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 07:57:50] 2025-11-27 12:56:43,146 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 07:57:50] 2025-11-27 12:56:43,146 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 07:57:50] 2025-11-27 12:56:43,146 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 07:57:50] 2025-11-27 12:56:43,146 | INFO     | job 6897139522 has completed (purged errors)
[2025-11-27 07:57:50] 2025-11-27 12:56:43,147 | INFO     | overall cleanup function is called
[2025-11-27 07:57:50] 2025-11-27 12:56:44,165 | INFO     | --- collectZombieJob: --- 10, [3365194]
[2025-11-27 07:57:50] 2025-11-27 12:56:44,167 | INFO     | zombie collector waiting for pid 3365194
[2025-11-27 07:57:50] 2025-11-27 12:56:44,167 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 07:57:50] 2025-11-27 12:56:44,167 | INFO     | collected zombie processes
[2025-11-27 07:57:50] 2025-11-27 12:56:44,167 | INFO     | will attempt to kill all subprocesses of pid=3365194
[2025-11-27 07:57:50] 2025-11-27 12:56:44,836 | INFO     | process IDs to be killed: [3365194] (in reverse order)
[2025-11-27 07:57:50] 2025-11-27 12:56:44,989 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 07:57:50] 2025-11-27 12:56:44,989 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 07:57:50] 2025-11-27 12:56:45,008 | INFO     | did not find any defunct processes belonging to 3365194
[2025-11-27 07:57:50] 2025-11-27 12:56:45,026 | INFO     | did not find any defunct processes belonging to 3365194
[2025-11-27 07:57:50] 2025-11-27 12:56:45,028 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 07:57:50] 2025-11-27 12:56:45,029 | INFO     | ready for new job
[2025-11-27 07:57:50] 2025-11-27 12:56:45,029 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 07:57:50] 2025-11-27 12:56:45,033 | INFO     | ***************************************
[2025-11-27 07:57:50] 2025-11-27 12:56:45,034 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 07:57:50] 2025-11-27 12:56:45,034 | INFO     | ***************************************
[2025-11-27 07:57:50] 2025-11-27 12:56:45,034 | INFO     | 
[2025-11-27 07:57:50] 2025-11-27 12:56:45,037 | INFO     | architecture information:
[2025-11-27 07:57:50] 2025-11-27 12:56:45,038 | INFO     | executing command: cat /etc/os-release
[2025-11-27 07:57:50] 2025-11-27 12:56:45,090 | INFO     | cat /etc/os-release:
[2025-11-27 07:57:50] NAME="CentOS Linux"
[2025-11-27 07:57:50] VERSION="7 (Core)"
[2025-11-27 07:57:50] ID="centos"
[2025-11-27 07:57:50] ID_LIKE="rhel fedora"
[2025-11-27 07:57:50] VERSION_ID="7"
[2025-11-27 07:57:50] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 07:57:50] ANSI_COLOR="0;31"
[2025-11-27 07:57:50] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 07:57:50] HOME_URL="https://www.centos.org/"
[2025-11-27 07:57:50] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 07:57:50] 
[2025-11-27 07:57:50] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 07:57:50] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 07:57:50] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 07:57:50] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 07:57:50] 
[2025-11-27 07:57:50] 2025-11-27 12:56:45,090 | INFO     | ***************************************
[2025-11-27 07:57:50] 2025-11-27 12:56:45,594 | INFO     | executing command: df -mP /tmp/boinchome/slots/3
[2025-11-27 07:57:50] 2025-11-27 12:56:45,674 | INFO     | sufficient remaining disk space (64815628288 B)
[2025-11-27 07:57:50] 2025-11-27 12:56:45,675 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 07:57:50] 2025-11-27 12:56:45,675 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 07:57:50] 2025-11-27 12:56:45,675 | INFO     | update_server=False
[2025-11-27 07:57:50] 2025-11-27 12:56:45,675 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 07:57:50] 2025-11-27 12:56:45,675 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 07:57:50] 2025-11-27 12:56:46,467 | INFO     | all data control threads have been joined
[2025-11-27 07:57:50] 2025-11-27 12:56:46,551 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 07:57:50] 2025-11-27 12:56:46,552 | INFO     | aborting loop
[2025-11-27 07:57:50] 2025-11-27 12:56:46,683 | INFO     | [job] retrieve thread has finished
[2025-11-27 07:57:50] 2025-11-27 12:56:46,796 | INFO     | all payload control threads have been joined
[2025-11-27 07:57:50] 2025-11-27 12:56:46,954 | INFO     | [data] copytool_in thread has finished
[2025-11-27 07:57:50] 2025-11-27 12:56:47,319 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 07:57:50] 2025-11-27 12:56:47,396 | INFO     | all job control threads have been joined
[2025-11-27 07:57:50] 2025-11-27 12:56:47,473 | INFO     | [data] control thread has finished
[2025-11-27 07:57:50] 2025-11-27 12:56:47,556 | INFO     | [job] job monitor thread has finished
[2025-11-27 07:57:50] 2025-11-27 12:56:47,683 | INFO     | [data] copytool_out thread has finished
[2025-11-27 07:57:50] 2025-11-27 12:56:47,794 | INFO     | [payload] validate_post thread has finished
[2025-11-27 07:57:50] 2025-11-27 12:56:47,802 | INFO     | [payload] control thread has finished
[2025-11-27 07:57:50] 2025-11-27 12:56:47,811 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 07:57:50] 2025-11-27 12:56:47,893 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 07:57:50] 2025-11-27 12:56:47,894 | INFO     | [job] validate thread has finished
[2025-11-27 07:57:50] 2025-11-27 12:56:47,923 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 07:57:50] 2025-11-27 12:56:47,955 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 07:57:50] 2025-11-27 12:56:48,127 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 07:57:50] 2025-11-27 12:56:48,159 | INFO     | [payload] failed_post thread has finished
[2025-11-27 07:57:50] 2025-11-27 12:56:48,401 | INFO     | [job] control thread has finished
[2025-11-27 07:57:50] 2025-11-27 12:56:49,133 | INFO     | [job] queue monitor thread has finished
[2025-11-27 07:57:50] 2025-11-27 12:56:51,902 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 07:57:50] 2025-11-27 12:57:16,577 | INFO     | PID=3324676 has CPU usage=7.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 07:57:50] 2025-11-27 12:57:16,577 | INFO     | .. there are 51 such processes running
[2025-11-27 07:57:50] 2025-11-27 12:57:16,578 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 07:57:50] 2025-11-27 12:57:16,578 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 07:57:50] 2025-11-27 12:57:16,578 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 07:57:50] 2025-11-27 12:57:42,693 | INFO     | [monitor] cgroup control has ended
[2025-11-27 07:57:50] 2025-11-27 12:57:44,715 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140263386691392)>', '<ExcThread(monitor, started 140262751856384)>']
[2025-11-27 07:57:50] 2025-11-27 12:57:44,865 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 07:57:50] 2025-11-27 12:57:44,866 | INFO     | [monitor] control thread has ended
[2025-11-27 07:57:50] 2025-11-27 12:57:49,740 | INFO     | all workflow threads have been joined
[2025-11-27 07:57:50] 2025-11-27 12:57:49,741 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 07:57:50] 2025-11-27 12:57:49,741 | INFO     | traces error code: 0
[2025-11-27 07:57:50] 2025-11-27 12:57:49,741 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 07:57:50] 2025-11-27 12:57:50,623 [wrapper] ==== pilot stdout END ====
[2025-11-27 07:57:50] 2025-11-27 12:57:50,634 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 07:57:50] 2025-11-27 12:57:50,658 [wrapper] pilotpid: 3324676
[2025-11-27 07:57:50] 2025-11-27 12:57:50,662 [wrapper] Pilot exit status: 0
[2025-11-27 07:57:50] 2025-11-27 12:57:50,688 [wrapper] pandaids: 6897139522 6897139522
[2025-11-27 07:57:50] 2025-11-27 12:57:50,773 [wrapper] cleanup supervisor_pilot 3278338 3324677
[2025-11-27 07:57:50] 2025-11-27 12:57:50,776 [wrapper] Test setup, not cleaning
[2025-11-27 07:57:50] 2025-11-27 12:57:50,779 [wrapper] apfmon messages muted
[2025-11-27 07:57:50] 2025-11-27 12:57:50,782 [wrapper] ==== wrapper stdout END ====
[2025-11-27 07:57:50] 2025-11-27 12:57:50,784 [wrapper] ==== wrapper stderr END ====
[2025-11-27 07:57:50]  *** Error codes and diagnostics ***
[2025-11-27 07:57:51]     "exeErrorCode": 0,
[2025-11-27 07:57:51]     "exeErrorDiag": "",
[2025-11-27 07:57:51]     "pilotErrorCode": 0,
[2025-11-27 07:57:51]     "pilotErrorDiag": "",
[2025-11-27 07:57:51]  *** Listing of results directory ***
[2025-11-27 07:57:51] total 1723996
[2025-11-27 07:57:51] drwx------. 5 boincer umatlas      4096 Nov  5 12:16 pilot3
[2025-11-27 07:57:51] -rw-r--r--. 1 boincer umatlas    576529 Nov 25 11:48 pilot3.tar.gz
[2025-11-27 07:57:51] -rw-r--r--. 1 boincer umatlas      5112 Nov 25 11:55 queuedata.json
[2025-11-27 07:57:51] -rwx------. 1 boincer umatlas     36292 Nov 25 11:56 runpilot2-wrapper.sh
[2025-11-27 07:57:51] -rw-r--r--. 1 boincer umatlas       100 Nov 26 00:00 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 07:57:51] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 26 00:00 run_atlas
[2025-11-27 07:57:51] -rw-r--r--. 1 boincer umatlas       105 Nov 26 00:00 job.xml
[2025-11-27 07:57:51] -rw-r--r--. 3 boincer umatlas 408887357 Nov 26 00:00 EVNT.47483658._002182.pool.root.1
[2025-11-27 07:57:51] -rw-r--r--. 3 boincer umatlas 408887357 Nov 26 00:00 ATLAS.root_0
[2025-11-27 07:57:51] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 00:00 start_atlas.sh
[2025-11-27 07:57:51] drwxrwx--x. 2 boincer umatlas      4096 Nov 26 00:00 shared
[2025-11-27 07:57:51] -rw-r--r--. 2 boincer umatlas    590109 Nov 26 00:00 input.tar.gz
[2025-11-27 07:57:51] -rw-r--r--. 1 boincer umatlas         0 Nov 26 00:00 boinc_lockfile
[2025-11-27 07:57:51] -rw-r--r--. 1 boincer umatlas      2786 Nov 26 16:45 pandaJob.out
[2025-11-27 07:57:51] -rw-------. 1 boincer umatlas        57 Nov 26 16:45 setup.sh.local
[2025-11-27 07:57:51] -rw-------. 1 boincer umatlas    991538 Nov 26 16:46 agis_schedconf.cvmfs.json
[2025-11-27 07:57:51] -rw-r--r--. 1 boincer umatlas       534 Nov 27 07:48 boinc_task_state.xml
[2025-11-27 07:57:51] -rw-r--r--. 1 boincer umatlas      6878 Nov 27 07:54 init_data.xml
[2025-11-27 07:57:51] -rw-------. 1 boincer umatlas 925725423 Nov 27 07:54 HITS.47556161._001659.pool.root.1
[2025-11-27 07:57:51] -rw-------. 1 boincer umatlas      1068 Nov 27 07:56 memory_monitor_summary.json
[2025-11-27 07:57:51] -rw-------. 1 boincer umatlas   1516240 Nov 27 07:56 agis_ddmendpoints.agis.ALL.json
[2025-11-27 07:57:51] -rw-------. 1 boincer umatlas   2049730 Nov 27 07:56 log.47556161._001659.job.log.tgz.1
[2025-11-27 07:57:51] -rw-------. 1 boincer umatlas        96 Nov 27 07:56 pilot_heartbeat.json
[2025-11-27 07:57:51] -rw-------. 1 boincer umatlas      8651 Nov 27 07:56 heartbeat.json
[2025-11-27 07:57:51] -rw-r--r--. 1 boincer umatlas        30 Nov 27 07:57 wrapper_checkpoint.txt
[2025-11-27 07:57:51] -rw-r--r--. 1 boincer umatlas      8192 Nov 27 07:57 boinc_mmap_file
[2025-11-27 07:57:51] -rw-------. 1 boincer umatlas      4824 Nov 27 07:57 pilotlog.txt
[2025-11-27 07:57:51] -rw-------. 1 boincer umatlas   6917485 Nov 27 07:57 log.47556161._001659.job.log.1
[2025-11-27 07:57:51] -rw-------. 1 boincer umatlas       353 Nov 27 07:57 output.list
[2025-11-27 07:57:51] -rw-r--r--. 1 boincer umatlas       620 Nov 27 07:57 runtime_log
[2025-11-27 07:57:51] -rw-------. 1 boincer umatlas   8990720 Nov 27 07:57 result.tar.gz
[2025-11-27 07:57:51] -rw-------. 1 boincer umatlas       789 Nov 27 07:57 uZZKDmVWBi8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmUUMKDmyNAoAo.diag
[2025-11-27 07:57:51] -rw-r--r--. 1 boincer umatlas      9428 Nov 27 07:57 runtime_log.err
[2025-11-27 07:57:51] -rw-r--r--. 1 boincer umatlas     23637 Nov 27 07:57 stderr.txt
[2025-11-27 07:57:51] HITS file was successfully produced:
[2025-11-27 07:57:51] -rw-------. 1 boincer umatlas 925725423 Nov 27 07:54 shared/HITS.pool.root.1
[2025-11-27 07:57:51]  *** Contents of shared directory: ***
[2025-11-27 07:57:51] total 1312724
[2025-11-27 07:57:51] -rw-r--r--. 3 boincer umatlas 408887357 Nov 26 00:00 ATLAS.root_0
[2025-11-27 07:57:51] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 00:00 start_atlas.sh
[2025-11-27 07:57:51] -rw-r--r--. 2 boincer umatlas    590109 Nov 26 00:00 input.tar.gz
[2025-11-27 07:57:51] -rw-------. 1 boincer umatlas 925725423 Nov 27 07:54 HITS.pool.root.1
[2025-11-27 07:57:51] -rw-------. 1 boincer umatlas   8990720 Nov 27 07:57 result.tar.gz
07:57:52 (3306069): run_atlas exited; CPU time 242433.859333
07:57:52 (3306069): called boinc_finish(0)

</stderr_txt>
]]>

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