Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
21:48:29 (494892): wrapper (7.7.26015): starting
21:48:29 (494892): wrapper: running run_atlas (--nthreads 9)
[2025-11-25 21:48:29] Arguments: --nthreads 9
[2025-11-25 21:48:29] Threads: 9
[2025-11-25 21:48:29] Checking for CVMFS
[2025-11-25 21:48:29] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 21:48:29] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 21:48:29] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 21:48:30] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 21:48:30] 2.13.3.0 9230 29336 323904 153305 3 195 23749333 32503808 26054 16776704 0 209700761 99.824 91524269 34038 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-25 21:48:30] CVMFS is ok
[2025-11-25 21:48:30] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 21:48:30] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 21:48:30] Further information can be found at the LHC@home message board.
[2025-11-25 21:48:30] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 21:48:30] Checking for apptainer binary...
[2025-11-25 21:48:30] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 21:48:30] Running /usr/bin/apptainer --version
[2025-11-25 21:48:30] apptainer version 1.4.4-1.el9
[2025-11-25 21:48:30] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 21:48:31] c-4-35.aglt2.org
[2025-11-25 21:48:31] apptainer works
[2025-11-25 21:48:31] Set ATHENA_PROC_NUMBER=9
[2025-11-25 21:48:31] Set ATHENA_CORE_NUMBER=9
[2025-11-25 21:48:31] Starting ATLAS job with PandaID=6897139462
[2025-11-25 21:48:31] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
14:09:33 (3956566): wrapper (7.7.26015): starting
14:09:33 (3956566): wrapper: running run_atlas (--nthreads 9)
[2025-11-26 14:09:33] Arguments: --nthreads 9
[2025-11-26 14:09:33] Threads: 9
[2025-11-26 14:09:33] This job has been restarted, cleaning up previous attempt
[2025-11-26 14:09:33] Checking for CVMFS
[2025-11-26 14:09:33] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 14:09:33] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 14:09:33] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 14:09:33] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 14:09:33] 2.13.3.0 9230 30317 320592 153332 0 223 17612927 32503808 23389 16776704 0 214417400 99.822 94528008 33898 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-26 14:09:33] CVMFS is ok
[2025-11-26 14:09:33] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 14:09:33] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 14:09:33] Further information can be found at the LHC@home message board.
[2025-11-26 14:09:33] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 14:09:33] Checking for apptainer binary...
[2025-11-26 14:09:33] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 14:09:33] Running /usr/bin/apptainer --version
[2025-11-26 14:09:33] apptainer version 1.4.4-1.el9
[2025-11-26 14:09:33] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 14:09:34] c-4-35.aglt2.org
[2025-11-26 14:09:34] apptainer works
[2025-11-26 14:09:34] Set ATHENA_PROC_NUMBER=9
[2025-11-26 14:09:34] Set ATHENA_CORE_NUMBER=9
[2025-11-26 14:09:34] Starting ATLAS job with PandaID=6897139462
[2025-11-26 14:09:34] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 07:37:45]  *** The last 200 lines of the pilot log: ***
[2025-11-27 07:37:45] 2025-11-27 12:36:56,999 | INFO     | fitting pss+swap vs Time
[2025-11-27 07:37:45] 2025-11-27 12:36:57,005 | INFO     | sum of square deviations: 337874766997.12744
[2025-11-27 07:37:45] 2025-11-27 12:36:57,029 | INFO     | monitor loop #3830: job 0:6897139462 is in state 'finished'
[2025-11-27 07:37:45] 2025-11-27 12:36:57,029 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 07:37:45] 2025-11-27 12:36:57,062 | INFO     | sum of deviations: 1760118432382.1375
[2025-11-27 07:37:45] 2025-11-27 12:36:57,062 | INFO     | mean x: 1764215566.8056366
[2025-11-27 07:37:45] 2025-11-27 12:36:57,063 | INFO     | mean y: 3122292.735665695
[2025-11-27 07:37:45] 2025-11-27 12:36:57,063 | INFO     | intersect: -9187348973.964464
[2025-11-27 07:37:45] 2025-11-27 12:36:57,064 | INFO     | chi2: 11.678447441053047
[2025-11-27 07:37:45] 2025-11-27 12:36:57,066 | INFO     | sum of square deviations: 332974292940.7424
[2025-11-27 07:37:45] 2025-11-27 12:36:57,119 | INFO     | sum of deviations: 2130001410203.4844
[2025-11-27 07:37:45] 2025-11-27 12:36:57,119 | INFO     | mean x: 1764215414.3144531
[2025-11-27 07:37:45] 2025-11-27 12:36:57,119 | INFO     | mean y: 3133800.12890625
[2025-11-27 07:37:45] 2025-11-27 12:36:57,120 | INFO     | intersect: -11282366011.897907
[2025-11-27 07:37:45] 2025-11-27 12:36:57,125 | INFO     | chi2: 8.47135348946707
[2025-11-27 07:37:45] 2025-11-27 12:36:57,125 | INFO     | current chi2=8.47135348946707 (change=27.461646488317736 %)
[2025-11-27 07:37:45] 2025-11-27 12:36:57,127 | INFO     | sum of square deviations: 328121447684.2041
[2025-11-27 07:37:45] 2025-11-27 12:36:57,176 | INFO     | sum of deviations: 2529586989305.3613
[2025-11-27 07:37:45] 2025-11-27 12:36:57,177 | INFO     | mean x: 1764215261.8233562
[2025-11-27 07:37:45] 2025-11-27 12:36:57,177 | INFO     | mean y: 3146356.707556428
[2025-11-27 07:37:45] 2025-11-27 12:36:57,181 | INFO     | intersect: -13597720042.423449
[2025-11-27 07:37:45] 2025-11-27 12:36:57,182 | INFO     | chi2: 4.865612770520057
[2025-11-27 07:37:45] 2025-11-27 12:36:57,183 | INFO     | current chi2=4.865612770520057 (change=42.56392704460087 %)
[2025-11-27 07:37:45] 2025-11-27 12:36:57,184 | INFO     | sum of square deviations: 323315998664.9991
[2025-11-27 07:37:45] 2025-11-27 12:36:57,220 | INFO     | sum of deviations: 2792176037717.442
[2025-11-27 07:37:45] 2025-11-27 12:36:57,220 | INFO     | mean x: 1764215109.3323472
[2025-11-27 07:37:45] 2025-11-27 12:36:57,220 | INFO     | mean y: 3154684.1084812623
[2025-11-27 07:37:45] 2025-11-27 12:36:57,220 | INFO     | intersect: -15232711075.69534
[2025-11-27 07:37:45] 2025-11-27 12:36:57,221 | INFO     | chi2: 3.0872560280116987
[2025-11-27 07:37:45] 2025-11-27 12:36:57,222 | INFO     | current chi2=3.0872560280116987 (change=36.549491839612216 %)
[2025-11-27 07:37:45] 2025-11-27 12:36:57,224 | INFO     | sum of square deviations: 318557219712.028
[2025-11-27 07:37:45] 2025-11-27 12:36:57,249 | INFO     | sum of deviations: 2914797843490.453
[2025-11-27 07:37:45] 2025-11-27 12:36:57,249 | INFO     | mean x: 1764214956.8334985
[2025-11-27 07:37:45] 2025-11-27 12:36:57,250 | INFO     | mean y: 3158609.288404361
[2025-11-27 07:37:45] 2025-11-27 12:36:57,250 | INFO     | intersect: -16139404275.58512
[2025-11-27 07:37:45] 2025-11-27 12:36:57,251 | INFO     | chi2: 2.547999867590007
[2025-11-27 07:37:45] 2025-11-27 12:36:57,251 | INFO     | current chi2=2.547999867590007 (change=17.467166815088923 %)
[2025-11-27 07:37:45] 2025-11-27 12:36:57,251 | INFO     | right removable region: 1008
[2025-11-27 07:37:45] 2025-11-27 12:36:57,252 | INFO     | sum of square deviations: 332973284738.0
[2025-11-27 07:37:45] 2025-11-27 12:36:57,278 | INFO     | sum of deviations: 1481486972617.273
[2025-11-27 07:37:45] 2025-11-27 12:36:57,279 | INFO     | mean x: 1764215719.3125
[2025-11-27 07:37:45] 2025-11-27 12:36:57,279 | INFO     | mean y: 3130950.19921875
[2025-11-27 07:37:45] 2025-11-27 12:36:57,279 | INFO     | intersect: -7846335432.981163
[2025-11-27 07:37:45] 2025-11-27 12:36:57,280 | INFO     | chi2: 9.777597800255197
[2025-11-27 07:37:45] 2025-11-27 12:36:57,280 | INFO     | current chi2=9.777597800255197 (change=16.276561164421782 %)
[2025-11-27 07:37:45] 2025-11-27 12:36:57,281 | INFO     | left removable region: 10
[2025-11-27 07:37:45] 2025-11-27 12:36:57,282 | INFO     | sum of square deviations: 308251906686.0439
[2025-11-27 07:37:45] 2025-11-27 12:36:57,316 | INFO     | sum of deviations: 2536908984113.344
[2025-11-27 07:37:45] 2025-11-27 12:36:57,319 | INFO     | mean x: 1764215231.3466933
[2025-11-27 07:37:45] 2025-11-27 12:36:57,319 | INFO     | mean y: 3171669.149298597
[2025-11-27 07:37:45] 2025-11-27 12:36:57,320 | INFO     | intersect: -14516295601.726349
[2025-11-27 07:37:45] 2025-11-27 12:36:57,321 | INFO     | chi2: 0.4393175938459172
[2025-11-27 07:37:45] 2025-11-27 12:36:57,321 | INFO     | current memory leak: 8.23 B/s (using 998 data points, chi2=0.44)
[2025-11-27 07:37:45] 2025-11-27 12:36:57,322 | INFO     | could have reported an average CPU frequency of 2602 MHz (38 samples)
[2025-11-27 07:37:45] 2025-11-27 12:36:57,322 | INFO     | ..............................
[2025-11-27 07:37:45] 2025-11-27 12:36:57,323 | INFO     | . Timing measurements:
[2025-11-27 07:37:45] 2025-11-27 12:36:57,323 | INFO     | . get job = 0 s
[2025-11-27 07:37:45] 2025-11-27 12:36:57,327 | INFO     | . initial setup = 2 s
[2025-11-27 07:37:45] 2025-11-27 12:36:57,327 | INFO     | . payload setup = 5 s
[2025-11-27 07:37:45] 2025-11-27 12:36:57,327 | INFO     | . stage-in = 0 s
[2025-11-27 07:37:45] 2025-11-27 12:36:57,327 | INFO     | . payload execution = 62763 s
[2025-11-27 07:37:45] 2025-11-27 12:36:57,327 | INFO     | . stage-out = 8 s
[2025-11-27 07:37:45] 2025-11-27 12:36:57,328 | INFO     | . log creation = 1 s
[2025-11-27 07:37:45] 2025-11-27 12:36:57,328 | INFO     | ..............................
[2025-11-27 07:37:45] 2025-11-27 12:36:57,560 | INFO     | 
[2025-11-27 07:37:45] 2025-11-27 12:36:57,561 | INFO     | job summary report
[2025-11-27 07:37:45] 2025-11-27 12:36:57,561 | INFO     | --------------------------------------------------
[2025-11-27 07:37:45] 2025-11-27 12:36:57,561 | INFO     | PanDA job id: 6897139462
[2025-11-27 07:37:45] 2025-11-27 12:36:57,561 | INFO     | task id: 47556161
[2025-11-27 07:37:45] 2025-11-27 12:36:57,561 | INFO     | errors: (none)
[2025-11-27 07:37:45] 2025-11-27 12:36:57,561 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 07:37:45] 2025-11-27 12:36:57,561 | INFO     | pilot state: finished 
[2025-11-27 07:37:45] 2025-11-27 12:36:57,561 | INFO     | transexitcode: 0
[2025-11-27 07:37:45] 2025-11-27 12:36:57,562 | INFO     | exeerrorcode: 0
[2025-11-27 07:37:45] 2025-11-27 12:36:57,562 | INFO     | exeerrordiag: 
[2025-11-27 07:37:45] 2025-11-27 12:36:57,562 | INFO     | exitcode: 0
[2025-11-27 07:37:45] 2025-11-27 12:36:57,562 | INFO     | exitmsg: OK
[2025-11-27 07:37:45] 2025-11-27 12:36:57,562 | INFO     | cpuconsumptiontime: 301905 s
[2025-11-27 07:37:45] 2025-11-27 12:36:57,562 | INFO     | nevents: 1000
[2025-11-27 07:37:45] 2025-11-27 12:36:57,562 | INFO     | neventsw: 0
[2025-11-27 07:37:45] 2025-11-27 12:36:57,562 | INFO     | pid: 3988813
[2025-11-27 07:37:45] 2025-11-27 12:36:57,562 | INFO     | pgrp: 3988813
[2025-11-27 07:37:45] 2025-11-27 12:36:57,563 | INFO     | corecount: 9
[2025-11-27 07:37:45] 2025-11-27 12:36:57,563 | INFO     | event service: False
[2025-11-27 07:37:45] 2025-11-27 12:36:57,563 | INFO     | sizes: {0: 2284265, 4: 2284527, 11: 2284555, 62770: 2339163, 62781: 2348213, 62818: 2348403}
[2025-11-27 07:37:45] 2025-11-27 12:36:57,563 | INFO     | --------------------------------------------------
[2025-11-27 07:37:45] 2025-11-27 12:36:57,563 | INFO     | 
[2025-11-27 07:37:45] 2025-11-27 12:36:57,563 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-11-27 07:37:45] 2025-11-27 12:36:57,607 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 07:37:45] 2025-11-27 12:36:57,608 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 07:37:45] 2025-11-27 12:36:57,608 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 07:37:45] 2025-11-27 12:36:57,608 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 07:37:45] 2025-11-27 12:36:57,608 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 07:37:45] 2025-11-27 12:36:57,608 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 07:37:45] 2025-11-27 12:36:57,608 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 07:37:45] 2025-11-27 12:36:57,608 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 07:37:45] 2025-11-27 12:36:57,608 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 07:37:45] 2025-11-27 12:36:57,609 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 07:37:45] 2025-11-27 12:36:57,609 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 07:37:45] 2025-11-27 12:36:57,609 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 07:37:45] 2025-11-27 12:36:57,609 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 07:37:45] 2025-11-27 12:36:57,609 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 07:37:45] 2025-11-27 12:36:57,609 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 07:37:45] 2025-11-27 12:36:57,609 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 07:37:45] 2025-11-27 12:36:57,609 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 07:37:45] 2025-11-27 12:36:57,609 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 07:37:45] 2025-11-27 12:36:57,610 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 07:37:45] 2025-11-27 12:36:57,610 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 07:37:45] 2025-11-27 12:36:57,610 | INFO     | job 6897139462 has completed (purged errors)
[2025-11-27 07:37:45] 2025-11-27 12:36:57,610 | INFO     | overall cleanup function is called
[2025-11-27 07:37:45] 2025-11-27 12:36:58,648 | INFO     | --- collectZombieJob: --- 10, [3988813]
[2025-11-27 07:37:45] 2025-11-27 12:36:58,648 | INFO     | zombie collector waiting for pid 3988813
[2025-11-27 07:37:45] 2025-11-27 12:36:58,649 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 07:37:45] 2025-11-27 12:36:58,649 | INFO     | collected zombie processes
[2025-11-27 07:37:45] 2025-11-27 12:36:58,650 | INFO     | will attempt to kill all subprocesses of pid=3988813
[2025-11-27 07:37:45] 2025-11-27 12:36:59,552 | INFO     | process IDs to be killed: [3988813] (in reverse order)
[2025-11-27 07:37:45] 2025-11-27 12:36:59,908 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 07:37:45] 2025-11-27 12:36:59,908 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 07:37:45] 2025-11-27 12:36:59,941 | INFO     | did not find any defunct processes belonging to 3988813
[2025-11-27 07:37:45] 2025-11-27 12:36:59,975 | INFO     | did not find any defunct processes belonging to 3988813
[2025-11-27 07:37:45] 2025-11-27 12:36:59,980 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 07:37:45] 2025-11-27 12:36:59,980 | INFO     | ready for new job
[2025-11-27 07:37:45] 2025-11-27 12:36:59,980 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 07:37:45] 2025-11-27 12:36:59,989 | INFO     | ***************************************
[2025-11-27 07:37:45] 2025-11-27 12:36:59,989 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 07:37:45] 2025-11-27 12:36:59,989 | INFO     | ***************************************
[2025-11-27 07:37:45] 2025-11-27 12:36:59,989 | INFO     | 
[2025-11-27 07:37:45] 2025-11-27 12:36:59,995 | INFO     | architecture information:
[2025-11-27 07:37:45] 2025-11-27 12:37:00,004 | INFO     | executing command: cat /etc/os-release
[2025-11-27 07:37:45] 2025-11-27 12:37:00,050 | INFO     | cat /etc/os-release:
[2025-11-27 07:37:45] NAME="CentOS Linux"
[2025-11-27 07:37:45] VERSION="7 (Core)"
[2025-11-27 07:37:45] ID="centos"
[2025-11-27 07:37:45] ID_LIKE="rhel fedora"
[2025-11-27 07:37:45] VERSION_ID="7"
[2025-11-27 07:37:45] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 07:37:45] ANSI_COLOR="0;31"
[2025-11-27 07:37:45] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 07:37:45] HOME_URL="https://www.centos.org/"
[2025-11-27 07:37:45] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 07:37:45] 
[2025-11-27 07:37:45] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 07:37:45] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 07:37:45] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 07:37:45] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 07:37:45] 
[2025-11-27 07:37:45] 2025-11-27 12:37:00,051 | INFO     | ***************************************
[2025-11-27 07:37:45] 2025-11-27 12:37:00,557 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-11-27 07:37:45] 2025-11-27 12:37:00,639 | INFO     | sufficient remaining disk space (90937753600 B)
[2025-11-27 07:37:45] 2025-11-27 12:37:00,640 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 07:37:45] 2025-11-27 12:37:00,641 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 07:37:45] 2025-11-27 12:37:00,642 | INFO     | update_server=False
[2025-11-27 07:37:45] 2025-11-27 12:37:00,642 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 07:37:45] 2025-11-27 12:37:00,643 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 07:37:45] 2025-11-27 12:37:00,643 | INFO     | aborting loop
[2025-11-27 07:37:45] 2025-11-27 12:37:00,691 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 07:37:45] 2025-11-27 12:37:01,202 | INFO     | all payload control threads have been joined
[2025-11-27 07:37:45] 2025-11-27 12:37:01,650 | INFO     | [job] retrieve thread has finished
[2025-11-27 07:37:45] 2025-11-27 12:37:01,655 | INFO     | all data control threads have been joined
[2025-11-27 07:37:45] 2025-11-27 12:37:01,665 | INFO     | [job] job monitor thread has finished
[2025-11-27 07:37:45] 2025-11-27 12:37:01,711 | INFO     | [payload] validate_post thread has finished
[2025-11-27 07:37:45] 2025-11-27 12:37:01,799 | INFO     | [payload] failed_post thread has finished
[2025-11-27 07:37:45] 2025-11-27 12:37:02,023 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 07:37:45] 2025-11-27 12:37:02,073 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 07:37:45] 2025-11-27 12:37:02,177 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 07:37:45] 2025-11-27 12:37:02,185 | INFO     | [data] copytool_in thread has finished
[2025-11-27 07:37:45] 2025-11-27 12:37:02,208 | INFO     | [payload] control thread has finished
[2025-11-27 07:37:45] 2025-11-27 12:37:02,246 | INFO     | [job] validate thread has finished
[2025-11-27 07:37:45] 2025-11-27 12:37:02,347 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 07:37:45] 2025-11-27 12:37:02,419 | INFO     | all job control threads have been joined
[2025-11-27 07:37:45] 2025-11-27 12:37:02,603 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 07:37:45] 2025-11-27 12:37:02,662 | INFO     | [data] control thread has finished
[2025-11-27 07:37:45] 2025-11-27 12:37:02,699 | INFO     | [data] copytool_out thread has finished
[2025-11-27 07:37:45] 2025-11-27 12:37:02,858 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 07:37:45] 2025-11-27 12:37:03,424 | INFO     | [job] control thread has finished
[2025-11-27 07:37:45] 2025-11-27 12:37:03,612 | INFO     | [job] queue monitor thread has finished
[2025-11-27 07:37:45] 2025-11-27 12:37:06,892 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 07:37:45] 2025-11-27 12:37:29,914 | INFO     | PID=3967669 has CPU usage=3.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 07:37:45] 2025-11-27 12:37:29,915 | INFO     | .. there are 43 such processes running
[2025-11-27 07:37:45] 2025-11-27 12:37:29,915 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 07:37:45] 2025-11-27 12:37:29,915 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 07:37:45] 2025-11-27 12:37:29,915 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 07:37:45] 2025-11-27 12:37:38,501 | INFO     | [monitor] cgroup control has ended
[2025-11-27 07:37:45] 2025-11-27 12:37:39,445 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139708066101056)>', '<ExcThread(monitor, started 139707300181760)>']
[2025-11-27 07:37:45] 2025-11-27 12:37:40,048 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 07:37:45] 2025-11-27 12:37:40,048 | INFO     | [monitor] control thread has ended
[2025-11-27 07:37:45] 2025-11-27 12:37:44,471 | INFO     | all workflow threads have been joined
[2025-11-27 07:37:45] 2025-11-27 12:37:44,473 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 07:37:45] 2025-11-27 12:37:44,473 | INFO     | traces error code: 0
[2025-11-27 07:37:45] 2025-11-27 12:37:44,474 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 07:37:45] 2025-11-27 12:37:44,758 [wrapper] ==== pilot stdout END ====
[2025-11-27 07:37:45] 2025-11-27 12:37:44,774 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 07:37:45] 2025-11-27 12:37:44,796 [wrapper] pilotpid: 3967669
[2025-11-27 07:37:45] 2025-11-27 12:37:44,816 [wrapper] Pilot exit status: 0
[2025-11-27 07:37:45] 2025-11-27 12:37:45,074 [wrapper] pandaids: 6897139462 6897139462
[2025-11-27 07:37:45] 2025-11-27 12:37:45,161 [wrapper] cleanup supervisor_pilot 3656157 3967670
[2025-11-27 07:37:45] 2025-11-27 12:37:45,164 [wrapper] Test setup, not cleaning
[2025-11-27 07:37:45] 2025-11-27 12:37:45,167 [wrapper] apfmon messages muted
[2025-11-27 07:37:45] 2025-11-27 12:37:45,170 [wrapper] ==== wrapper stdout END ====
[2025-11-27 07:37:45] 2025-11-27 12:37:45,173 [wrapper] ==== wrapper stderr END ====
[2025-11-27 07:37:45]  *** Error codes and diagnostics ***
[2025-11-27 07:37:45]     "exeErrorCode": 0,
[2025-11-27 07:37:45]     "exeErrorDiag": "",
[2025-11-27 07:37:45]     "pilotErrorCode": 0,
[2025-11-27 07:37:45]     "pilotErrorDiag": "",
[2025-11-27 07:37:45]  *** Listing of results directory ***
[2025-11-27 07:37:45] total 1722384
[2025-11-27 07:37:45] drwx------. 5 boincer umatlas      4096 Nov  5 12:16 pilot3
[2025-11-27 07:37:45] -rw-r--r--. 1 boincer umatlas    576529 Nov 25 11:48 pilot3.tar.gz
[2025-11-27 07:37:45] -rw-r--r--. 1 boincer umatlas      5112 Nov 25 11:55 queuedata.json
[2025-11-27 07:37:45] -rwx------. 1 boincer umatlas     36292 Nov 25 11:56 runpilot2-wrapper.sh
[2025-11-27 07:37:45] -rw-r--r--. 1 boincer umatlas       100 Nov 25 21:48 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 07:37:45] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 25 21:48 run_atlas
[2025-11-27 07:37:45] -rw-r--r--. 1 boincer umatlas       105 Nov 25 21:48 job.xml
[2025-11-27 07:37:45] -rw-r--r--. 3 boincer umatlas 410932706 Nov 25 21:48 EVNT.47483658._002181.pool.root.1
[2025-11-27 07:37:45] -rw-r--r--. 3 boincer umatlas 410932706 Nov 25 21:48 ATLAS.root_0
[2025-11-27 07:37:45] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 21:48 start_atlas.sh
[2025-11-27 07:37:45] drwxrwx--x. 2 boincer umatlas      4096 Nov 25 21:48 shared
[2025-11-27 07:37:45] -rw-r--r--. 2 boincer umatlas    590110 Nov 25 21:48 input.tar.gz
[2025-11-27 07:37:45] -rw-r--r--. 1 boincer umatlas         0 Nov 25 21:48 boinc_lockfile
[2025-11-27 07:37:45] -rw-r--r--. 1 boincer umatlas      2786 Nov 26 14:09 pandaJob.out
[2025-11-27 07:37:45] -rw-------. 1 boincer umatlas        57 Nov 26 14:09 setup.sh.local
[2025-11-27 07:37:45] -rw-------. 1 boincer umatlas    991522 Nov 26 14:09 agis_schedconf.cvmfs.json
[2025-11-27 07:37:45] -rw-r--r--. 1 boincer umatlas       534 Nov 27 07:13 boinc_task_state.xml
[2025-11-27 07:37:45] -rw-r--r--. 1 boincer umatlas      6661 Nov 27 07:27 init_data.xml
[2025-11-27 07:37:45] -rw-------. 1 boincer umatlas 917273820 Nov 27 07:34 HITS.47556161._001649.pool.root.1
[2025-11-27 07:37:45] -rw-------. 1 boincer umatlas      1070 Nov 27 07:36 memory_monitor_summary.json
[2025-11-27 07:37:45] -rw-------. 1 boincer umatlas   1516240 Nov 27 07:36 agis_ddmendpoints.agis.ALL.json
[2025-11-27 07:37:45] -rw-------. 1 boincer umatlas   2277939 Nov 27 07:36 log.47556161._001649.job.log.tgz.1
[2025-11-27 07:37:45] -rw-------. 1 boincer umatlas        96 Nov 27 07:36 pilot_heartbeat.json
[2025-11-27 07:37:45] -rw-------. 1 boincer umatlas      8635 Nov 27 07:36 heartbeat.json
[2025-11-27 07:37:45] -rw-r--r--. 1 boincer umatlas      8192 Nov 27 07:37 boinc_mmap_file
[2025-11-27 07:37:45] -rw-r--r--. 1 boincer umatlas        30 Nov 27 07:37 wrapper_checkpoint.txt
[2025-11-27 07:37:45] -rw-------. 1 boincer umatlas      4824 Nov 27 07:37 pilotlog.txt
[2025-11-27 07:37:45] -rw-------. 1 boincer umatlas   8048779 Nov 27 07:37 log.47556161._001649.job.log.1
[2025-11-27 07:37:45] -rw-------. 1 boincer umatlas       353 Nov 27 07:37 output.list
[2025-11-27 07:37:45] -rw-r--r--. 1 boincer umatlas       620 Nov 27 07:37 runtime_log
[2025-11-27 07:37:45] -rw-------. 1 boincer umatlas  10342400 Nov 27 07:37 result.tar.gz
[2025-11-27 07:37:45] -rw-r--r--. 1 boincer umatlas      9418 Nov 27 07:37 runtime_log.err
[2025-11-27 07:37:45] -rw-------. 1 boincer umatlas       787 Nov 27 07:37 bjsNDmUWBi8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmLUMKDmuHo5Zn.diag
[2025-11-27 07:37:45] -rw-r--r--. 1 boincer umatlas     23300 Nov 27 07:37 stderr.txt
[2025-11-27 07:37:45] HITS file was successfully produced:
[2025-11-27 07:37:45] -rw-------. 1 boincer umatlas 917273820 Nov 27 07:34 shared/HITS.pool.root.1
[2025-11-27 07:37:45]  *** Contents of shared directory: ***
[2025-11-27 07:37:45] total 1307784
[2025-11-27 07:37:45] -rw-r--r--. 3 boincer umatlas 410932706 Nov 25 21:48 ATLAS.root_0
[2025-11-27 07:37:45] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 21:48 start_atlas.sh
[2025-11-27 07:37:45] -rw-r--r--. 2 boincer umatlas    590110 Nov 25 21:48 input.tar.gz
[2025-11-27 07:37:45] -rw-------. 1 boincer umatlas 917273820 Nov 27 07:34 HITS.pool.root.1
[2025-11-27 07:37:45] -rw-------. 1 boincer umatlas  10342400 Nov 27 07:37 result.tar.gz
07:37:47 (3956566): run_atlas exited; CPU time 304131.363226
07:37:47 (3956566): called boinc_finish(0)

</stderr_txt>
]]>

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