Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:03:21 (2504783): wrapper (7.7.26015): starting
00:03:21 (2504783): wrapper: running run_atlas (--nthreads 9)
[2025-11-26 00:03:21] Arguments: --nthreads 9
[2025-11-26 00:03:21] Threads: 9
[2025-11-26 00:03:21] Checking for CVMFS
[2025-11-26 00:03:21] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 00:03:21] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 00:03:21] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 00:03:22] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 00:03:22] 2.13.3.0 9393 29558 340948 153309 0 344 32522979 32935936 21272 16776704 0 109632495 99.530 130989474 39189 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-26 00:03:22] CVMFS is ok
[2025-11-26 00:03:22] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 00:03:22] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 00:03:22] Further information can be found at the LHC@home message board.
[2025-11-26 00:03:22] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 00:03:22] Checking for apptainer binary...
[2025-11-26 00:03:22] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 00:03:22] Running /usr/bin/apptainer --version
[2025-11-26 00:03:22] apptainer version 1.4.4-1.el9
[2025-11-26 00:03:22] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 00:03:22] c6-6-39-1.aglt2.org
[2025-11-26 00:03:22] apptainer works
[2025-11-26 00:03:23] Set ATHENA_PROC_NUMBER=9
[2025-11-26 00:03:23] Set ATHENA_CORE_NUMBER=9
[2025-11-26 00:03:23] Starting ATLAS job with PandaID=6897139458
[2025-11-26 00:03:23] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 18:09:25]  *** The last 200 lines of the pilot log: ***
[2025-11-26 18:09:25] 2025-11-26 23:08:51,249 | INFO     | time since job start (65090s) is within the limit (172800.0s)
[2025-11-26 18:09:25] 2025-11-26 23:08:51,502 | INFO     | monitor loop #4197: job 0:6897139458 is in state 'finished'
[2025-11-26 18:09:25] 2025-11-26 23:08:51,503 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 18:09:25] 2025-11-26 23:08:51,961 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-26 18:09:25] 2025-11-26 23:08:51,971 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 3108.913321428571
[2025-11-26 18:09:25] 2025-11-26 23:08:51,980 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6897139458/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 18:09:25] 2025-11-26 23:08:51,981 | INFO     | extracted standard info from prmon json
[2025-11-26 18:09:25] 2025-11-26 23:08:51,981 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 18:09:25] 2025-11-26 23:08:51,981 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 18:09:25] 2025-11-26 23:08:51,998 | INFO     | fitting pss+swap vs Time
[2025-11-26 18:09:25] 2025-11-26 23:08:51,999 | INFO     | sum of square deviations: 375601730526.61896
[2025-11-26 18:09:25] 2025-11-26 23:08:52,019 | INFO     | sum of deviations: 3057565503870.0767
[2025-11-26 18:09:25] 2025-11-26 23:08:52,019 | INFO     | mean x: 1764166016.7523453
[2025-11-26 18:09:25] 2025-11-26 23:08:52,019 | INFO     | mean y: 3080947.1707317075
[2025-11-26 18:09:25] 2025-11-26 23:08:52,020 | INFO     | intersect: -14358016772.90373
[2025-11-26 18:09:25] 2025-11-26 23:08:52,021 | INFO     | chi2: 10.114332266376517
[2025-11-26 18:09:25] 2025-11-26 23:08:52,022 | INFO     | sum of square deviations: 370341415801.241
[2025-11-26 18:09:25] 2025-11-26 23:08:52,041 | INFO     | sum of deviations: 3483274844453.6543
[2025-11-26 18:09:25] 2025-11-26 23:08:52,041 | INFO     | mean x: 1764165864.258247
[2025-11-26 18:09:25] 2025-11-26 23:08:52,041 | INFO     | mean y: 3093288.6399622997
[2025-11-26 18:09:25] 2025-11-26 23:08:52,042 | INFO     | intersect: -16589905264.113312
[2025-11-26 18:09:25] 2025-11-26 23:08:52,043 | INFO     | chi2: 6.281789480840799
[2025-11-26 18:09:25] 2025-11-26 23:08:52,043 | INFO     | current chi2=6.281789480840799 (change=37.89219777044892 %)
[2025-11-26 18:09:25] 2025-11-26 23:08:52,044 | INFO     | sum of square deviations: 365130450838.28705
[2025-11-26 18:09:25] 2025-11-26 23:08:52,076 | INFO     | sum of deviations: 3667269904258.084
[2025-11-26 18:09:25] 2025-11-26 23:08:52,077 | INFO     | mean x: 1764165711.7642045
[2025-11-26 18:09:25] 2025-11-26 23:08:52,077 | INFO     | mean y: 3098671.727272727
[2025-11-26 18:09:25] 2025-11-26 23:08:52,077 | INFO     | intersect: -17715696914.955437
[2025-11-26 18:09:25] 2025-11-26 23:08:52,079 | INFO     | chi2: 5.3629595913246115
[2025-11-26 18:09:25] 2025-11-26 23:08:52,079 | INFO     | current chi2=5.3629595913246115 (change=14.626881278313784 %)
[2025-11-26 18:09:25] 2025-11-26 23:08:52,079 | INFO     | right removable region: 1055
[2025-11-26 18:09:25] 2025-11-26 23:08:52,081 | INFO     | sum of square deviations: 370340601451.2406
[2025-11-26 18:09:25] 2025-11-26 23:08:52,104 | INFO     | sum of deviations: 2623479856976.3413
[2025-11-26 18:09:25] 2025-11-26 23:08:52,105 | INFO     | mean x: 1764166169.258247
[2025-11-26 18:09:25] 2025-11-26 23:08:52,105 | INFO     | mean y: 3093526.7323279926
[2025-11-26 18:09:25] 2025-11-26 23:08:52,105 | INFO     | intersect: -12494197861.98268
[2025-11-26 18:09:25] 2025-11-26 23:08:52,106 | INFO     | chi2: 6.430105068796687
[2025-11-26 18:09:25] 2025-11-26 23:08:52,106 | INFO     | current chi2=6.430105068796687 (change=36.42580746360741 %)
[2025-11-26 18:09:25] 2025-11-26 23:08:52,107 | INFO     | sum of square deviations: 365129210095.4227
[2025-11-26 18:09:25] 2025-11-26 23:08:52,128 | INFO     | sum of deviations: 2438941695836.444
[2025-11-26 18:09:25] 2025-11-26 23:08:52,129 | INFO     | mean x: 1764166321.7585227
[2025-11-26 18:09:25] 2025-11-26 23:08:52,129 | INFO     | mean y: 3098921.284090909
[2025-11-26 18:09:25] 2025-11-26 23:08:52,129 | INFO     | intersect: -11780945415.795399
[2025-11-26 18:09:25] 2025-11-26 23:08:52,130 | INFO     | chi2: 5.80653874402162
[2025-11-26 18:09:25] 2025-11-26 23:08:52,131 | INFO     | current chi2=5.80653874402162 (change=9.697607085785291 %)
[2025-11-26 18:09:25] 2025-11-26 23:08:52,131 | INFO     | left removable region: 20
[2025-11-26 18:09:25] 2025-11-26 23:08:52,132 | INFO     | sum of square deviations: 343776643458.04236
[2025-11-26 18:09:25] 2025-11-26 23:08:52,151 | INFO     | sum of deviations: 2874197987950.679
[2025-11-26 18:09:25] 2025-11-26 23:08:52,151 | INFO     | mean x: 1764166291.2618358
[2025-11-26 18:09:25] 2025-11-26 23:08:52,151 | INFO     | mean y: 3123763.1893719807
[2025-11-26 18:09:25] 2025-11-26 23:08:52,151 | INFO     | intersect: -14746462345.251524
[2025-11-26 18:09:25] 2025-11-26 23:08:52,152 | INFO     | chi2: 0.7530412554259501
[2025-11-26 18:09:25] 2025-11-26 23:08:52,153 | INFO     | current memory leak: 8.36 B/s (using 1035 data points, chi2=0.75)
[2025-11-26 18:09:25] 2025-11-26 23:08:52,154 | INFO     | could have reported an average CPU frequency of 3034 MHz (39 samples)
[2025-11-26 18:09:25] 2025-11-26 23:08:52,154 | INFO     | ..............................
[2025-11-26 18:09:25] 2025-11-26 23:08:52,154 | INFO     | . Timing measurements:
[2025-11-26 18:09:25] 2025-11-26 23:08:52,154 | INFO     | . get job = 0 s
[2025-11-26 18:09:25] 2025-11-26 23:08:52,154 | INFO     | . initial setup = 3 s
[2025-11-26 18:09:25] 2025-11-26 23:08:52,154 | INFO     | . payload setup = 26 s
[2025-11-26 18:09:25] 2025-11-26 23:08:52,154 | INFO     | . stage-in = 0 s
[2025-11-26 18:09:25] 2025-11-26 23:08:52,154 | INFO     | . payload execution = 65004 s
[2025-11-26 18:09:25] 2025-11-26 23:08:52,154 | INFO     | . stage-out = 3 s
[2025-11-26 18:09:25] 2025-11-26 23:08:52,154 | INFO     | . log creation = 0 s
[2025-11-26 18:09:25] 2025-11-26 23:08:52,155 | INFO     | ..............................
[2025-11-26 18:09:25] 2025-11-26 23:08:52,675 | INFO     | 
[2025-11-26 18:09:25] 2025-11-26 23:08:52,676 | INFO     | job summary report
[2025-11-26 18:09:25] 2025-11-26 23:08:52,676 | INFO     | --------------------------------------------------
[2025-11-26 18:09:25] 2025-11-26 23:08:52,676 | INFO     | PanDA job id: 6897139458
[2025-11-26 18:09:25] 2025-11-26 23:08:52,676 | INFO     | task id: 47556161
[2025-11-26 18:09:25] 2025-11-26 23:08:52,676 | INFO     | errors: (none)
[2025-11-26 18:09:25] 2025-11-26 23:08:52,676 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 18:09:25] 2025-11-26 23:08:52,676 | INFO     | pilot state: finished 
[2025-11-26 18:09:25] 2025-11-26 23:08:52,676 | INFO     | transexitcode: 0
[2025-11-26 18:09:25] 2025-11-26 23:08:52,676 | INFO     | exeerrorcode: 0
[2025-11-26 18:09:25] 2025-11-26 23:08:52,676 | INFO     | exeerrordiag: 
[2025-11-26 18:09:25] 2025-11-26 23:08:52,676 | INFO     | exitcode: 0
[2025-11-26 18:09:25] 2025-11-26 23:08:52,677 | INFO     | exitmsg: OK
[2025-11-26 18:09:25] 2025-11-26 23:08:52,677 | INFO     | cpuconsumptiontime: 235113 s
[2025-11-26 18:09:25] 2025-11-26 23:08:52,677 | INFO     | nevents: 1000
[2025-11-26 18:09:25] 2025-11-26 23:08:52,677 | INFO     | neventsw: 0
[2025-11-26 18:09:25] 2025-11-26 23:08:52,677 | INFO     | pid: 2523630
[2025-11-26 18:09:25] 2025-11-26 23:08:52,677 | INFO     | pgrp: 2523630
[2025-11-26 18:09:25] 2025-11-26 23:08:52,677 | INFO     | corecount: 9
[2025-11-26 18:09:25] 2025-11-26 23:08:52,677 | INFO     | event service: False
[2025-11-26 18:09:25] 2025-11-26 23:08:52,677 | INFO     | sizes: {0: 2284094, 1: 2284293, 12: 2284293, 20: 2284583, 23: 2284611, 65035: 2340381, 65040: 2349403, 65042: 2349459, 65049: 2349705}
[2025-11-26 18:09:25] 2025-11-26 23:08:52,677 | INFO     | --------------------------------------------------
[2025-11-26 18:09:25] 2025-11-26 23:08:52,677 | INFO     | 
[2025-11-26 18:09:25] 2025-11-26 23:08:52,677 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-11-26 18:09:25] 2025-11-26 23:08:52,708 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 18:09:25] 2025-11-26 23:08:52,708 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 18:09:25] 2025-11-26 23:08:52,708 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 18:09:25] 2025-11-26 23:08:52,708 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 18:09:25] 2025-11-26 23:08:52,708 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 18:09:25] 2025-11-26 23:08:52,709 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 18:09:25] 2025-11-26 23:08:52,709 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 18:09:25] 2025-11-26 23:08:52,709 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 18:09:25] 2025-11-26 23:08:52,709 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 18:09:25] 2025-11-26 23:08:52,709 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 18:09:25] 2025-11-26 23:08:52,709 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 18:09:25] 2025-11-26 23:08:52,710 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 18:09:25] 2025-11-26 23:08:52,710 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 18:09:25] 2025-11-26 23:08:52,710 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 18:09:25] 2025-11-26 23:08:52,710 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 18:09:25] 2025-11-26 23:08:52,710 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 18:09:25] 2025-11-26 23:08:52,710 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 18:09:25] 2025-11-26 23:08:52,710 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 18:09:25] 2025-11-26 23:08:52,710 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 18:09:25] 2025-11-26 23:08:52,710 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 18:09:25] 2025-11-26 23:08:52,710 | INFO     | job 6897139458 has completed (purged errors)
[2025-11-26 18:09:25] 2025-11-26 23:08:52,710 | INFO     | overall cleanup function is called
[2025-11-26 18:09:25] 2025-11-26 23:08:53,728 | INFO     | --- collectZombieJob: --- 10, [2523630]
[2025-11-26 18:09:25] 2025-11-26 23:08:53,728 | INFO     | zombie collector waiting for pid 2523630
[2025-11-26 18:09:25] 2025-11-26 23:08:53,728 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 18:09:25] 2025-11-26 23:08:53,728 | INFO     | collected zombie processes
[2025-11-26 18:09:25] 2025-11-26 23:08:53,728 | INFO     | will attempt to kill all subprocesses of pid=2523630
[2025-11-26 18:09:25] 2025-11-26 23:08:54,164 | INFO     | process IDs to be killed: [2523630] (in reverse order)
[2025-11-26 18:09:25] 2025-11-26 23:08:54,296 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 18:09:25] 2025-11-26 23:08:54,296 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 18:09:25] 2025-11-26 23:08:54,312 | INFO     | did not find any defunct processes belonging to 2523630
[2025-11-26 18:09:25] 2025-11-26 23:08:54,328 | INFO     | did not find any defunct processes belonging to 2523630
[2025-11-26 18:09:25] 2025-11-26 23:08:54,329 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 18:09:25] 2025-11-26 23:08:54,329 | INFO     | ready for new job
[2025-11-26 18:09:25] 2025-11-26 23:08:54,330 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 18:09:25] 2025-11-26 23:08:54,334 | INFO     | ***************************************
[2025-11-26 18:09:25] 2025-11-26 23:08:54,335 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 18:09:25] 2025-11-26 23:08:54,335 | INFO     | ***************************************
[2025-11-26 18:09:25] 2025-11-26 23:08:54,335 | INFO     | 
[2025-11-26 18:09:25] 2025-11-26 23:08:54,338 | INFO     | architecture information:
[2025-11-26 18:09:25] 2025-11-26 23:08:54,338 | INFO     | executing command: cat /etc/os-release
[2025-11-26 18:09:25] 2025-11-26 23:08:54,355 | INFO     | cat /etc/os-release:
[2025-11-26 18:09:25] NAME="CentOS Linux"
[2025-11-26 18:09:25] VERSION="7 (Core)"
[2025-11-26 18:09:25] ID="centos"
[2025-11-26 18:09:25] ID_LIKE="rhel fedora"
[2025-11-26 18:09:25] VERSION_ID="7"
[2025-11-26 18:09:25] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 18:09:25] ANSI_COLOR="0;31"
[2025-11-26 18:09:25] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 18:09:25] HOME_URL="https://www.centos.org/"
[2025-11-26 18:09:25] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 18:09:25] 
[2025-11-26 18:09:25] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 18:09:25] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 18:09:25] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 18:09:25] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 18:09:25] 
[2025-11-26 18:09:25] 2025-11-26 23:08:54,355 | INFO     | ***************************************
[2025-11-26 18:09:25] 2025-11-26 23:08:54,859 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-11-26 18:09:25] 2025-11-26 23:08:54,884 | INFO     | sufficient remaining disk space (68980572160 B)
[2025-11-26 18:09:25] 2025-11-26 23:08:54,884 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 18:09:25] 2025-11-26 23:08:54,885 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 18:09:25] 2025-11-26 23:08:54,885 | INFO     | update_server=False
[2025-11-26 18:09:25] 2025-11-26 23:08:54,885 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 18:09:25] 2025-11-26 23:08:55,023 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 18:09:25] 2025-11-26 23:08:55,024 | INFO     | aborting loop
[2025-11-26 18:09:25] 2025-11-26 23:08:55,473 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 18:09:25] 2025-11-26 23:08:55,890 | INFO     | [job] retrieve thread has finished
[2025-11-26 18:09:25] 2025-11-26 23:08:55,959 | INFO     | all data control threads have been joined
[2025-11-26 18:09:25] 2025-11-26 23:08:56,029 | INFO     | [job] job monitor thread has finished
[2025-11-26 18:09:25] 2025-11-26 23:08:56,084 | INFO     | all payload control threads have been joined
[2025-11-26 18:09:25] 2025-11-26 23:08:56,117 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 18:09:25] 2025-11-26 23:08:56,125 | INFO     | [monitor] cgroup control has ended
[2025-11-26 18:09:25] 2025-11-26 23:08:56,142 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 18:09:25] 2025-11-26 23:08:56,178 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 18:09:25] 2025-11-26 23:08:56,289 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 18:09:25] 2025-11-26 23:08:56,385 | INFO     | [job] validate thread has finished
[2025-11-26 18:09:25] 2025-11-26 23:08:56,386 | INFO     | all job control threads have been joined
[2025-11-26 18:09:25] 2025-11-26 23:08:56,426 | INFO     | [payload] failed_post thread has finished
[2025-11-26 18:09:25] 2025-11-26 23:08:56,775 | INFO     | [data] copytool_in thread has finished
[2025-11-26 18:09:25] 2025-11-26 23:08:56,792 | INFO     | [payload] validate_post thread has finished
[2025-11-26 18:09:25] 2025-11-26 23:08:56,965 | INFO     | [data] control thread has finished
[2025-11-26 18:09:25] 2025-11-26 23:08:57,089 | INFO     | [payload] control thread has finished
[2025-11-26 18:09:25] 2025-11-26 23:08:57,122 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 18:09:25] 2025-11-26 23:08:57,258 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 18:09:25] 2025-11-26 23:08:57,392 | INFO     | [job] control thread has finished
[2025-11-26 18:09:25] 2025-11-26 23:08:58,263 | INFO     | [job] queue monitor thread has finished
[2025-11-26 18:09:25] 2025-11-26 23:08:58,296 | INFO     | [data] copytool_out thread has finished
[2025-11-26 18:09:25] 2025-11-26 23:08:59,497 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 18:09:25] 2025-11-26 23:09:01,407 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139635262547776)>', '<ExcThread(monitor, started 139634914862848)>']
[2025-11-26 18:09:25] 2025-11-26 23:09:06,433 | INFO     | all workflow threads have been joined
[2025-11-26 18:09:25] 2025-11-26 23:09:06,433 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 18:09:25] 2025-11-26 23:09:06,433 | INFO     | traces error code: 0
[2025-11-26 18:09:25] 2025-11-26 23:09:06,434 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 18:09:25] 2025-11-26 23:09:24,855 | INFO     | PID=2508747 has CPU usage=3.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-26 18:09:25] 2025-11-26 23:09:24,855 | INFO     | .. there are 33 such processes running
[2025-11-26 18:09:25] 2025-11-26 23:09:24,855 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 18:09:25] 2025-11-26 23:09:24,856 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 18:09:25] 2025-11-26 23:09:24,856 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 18:09:25] 2025-11-26 23:09:24,856 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 18:09:25] 2025-11-26 23:09:24,856 | INFO     | [monitor] control thread has ended
[2025-11-26 18:09:25] 2025-11-26 23:09:25,025 [wrapper] ==== pilot stdout END ====
[2025-11-26 18:09:25] 2025-11-26 23:09:25,028 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 18:09:25] 2025-11-26 23:09:25,030 [wrapper] pilotpid: 2508747
[2025-11-26 18:09:25] 2025-11-26 23:09:25,033 [wrapper] Pilot exit status: 0
[2025-11-26 18:09:25] 2025-11-26 23:09:25,044 [wrapper] pandaids: 6897139458
[2025-11-26 18:09:25] 2025-11-26 23:09:25,133 [wrapper] cleanup supervisor_pilot 2027866 2508748
[2025-11-26 18:09:25] 2025-11-26 23:09:25,136 [wrapper] Test setup, not cleaning
[2025-11-26 18:09:25] 2025-11-26 23:09:25,139 [wrapper] apfmon messages muted
[2025-11-26 18:09:25] 2025-11-26 23:09:25,141 [wrapper] ==== wrapper stdout END ====
[2025-11-26 18:09:25] 2025-11-26 23:09:25,144 [wrapper] ==== wrapper stderr END ====
[2025-11-26 18:09:25]  *** Error codes and diagnostics ***
[2025-11-26 18:09:25]     "exeErrorCode": 0,
[2025-11-26 18:09:25]     "exeErrorDiag": "",
[2025-11-26 18:09:25]     "pilotErrorCode": 0,
[2025-11-26 18:09:25]     "pilotErrorDiag": "",
[2025-11-26 18:09:25]  *** Listing of results directory ***
[2025-11-26 18:09:25] total 1321360
[2025-11-26 18:09:25] -rw-r--r--. 1 boincer umatlas    576529 Nov 25 11:48 pilot3.tar.gz
[2025-11-26 18:09:25] -rw-r--r--. 1 boincer umatlas      5112 Nov 25 11:55 queuedata.json
[2025-11-26 18:09:25] -rwx------. 1 boincer umatlas     36292 Nov 25 11:56 runpilot2-wrapper.sh
[2025-11-26 18:09:25] -rw-r--r--. 1 boincer umatlas       100 Nov 26 00:03 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 18:09:25] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 26 00:03 run_atlas
[2025-11-26 18:09:25] -rw-r--r--. 1 boincer umatlas       105 Nov 26 00:03 job.xml
[2025-11-26 18:09:25] -rw-r--r--. 2 boincer umatlas 410932706 Nov 26 00:03 EVNT.47483658._002181.pool.root.1
[2025-11-26 18:09:25] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 00:03 start_atlas.sh
[2025-11-26 18:09:25] drwxrwx--x. 2 boincer umatlas      4096 Nov 26 00:03 shared
[2025-11-26 18:09:25] -rw-r--r--. 2 boincer umatlas    590107 Nov 26 00:03 input.tar.gz
[2025-11-26 18:09:25] -rw-r--r--. 1 boincer umatlas         0 Nov 26 00:03 boinc_lockfile
[2025-11-26 18:09:25] -rw-r--r--. 1 boincer umatlas      2786 Nov 26 00:03 pandaJob.out
[2025-11-26 18:09:25] -rw-------. 1 boincer umatlas        57 Nov 26 00:03 setup.sh.local
[2025-11-26 18:09:25] -rw-------. 1 boincer umatlas    991877 Nov 26 00:03 agis_schedconf.cvmfs.json
[2025-11-26 18:09:25] drwx------. 5 boincer umatlas      4096 Nov 26 00:04 pilot3
[2025-11-26 18:09:25] -rw-r--r--. 1 boincer umatlas       533 Nov 26 17:50 boinc_task_state.xml
[2025-11-26 18:09:25] -rw-r--r--. 1 boincer umatlas      6844 Nov 26 18:03 init_data.xml
[2025-11-26 18:09:25] -rw-------. 1 boincer umatlas 916326321 Nov 26 18:07 HITS.47556161._001645.pool.root.1
[2025-11-26 18:09:25] -rw-------. 1 boincer umatlas      1058 Nov 26 18:08 memory_monitor_summary.json
[2025-11-26 18:09:25] -rw-------. 1 boincer umatlas   1516240 Nov 26 18:08 agis_ddmendpoints.agis.ALL.json
[2025-11-26 18:09:25] -rw-------. 1 boincer umatlas   2330115 Nov 26 18:08 log.47556161._001645.job.log.tgz.1
[2025-11-26 18:09:25] -rw-------. 1 boincer umatlas        95 Nov 26 18:08 pilot_heartbeat.json
[2025-11-26 18:09:25] -rw-------. 1 boincer umatlas      8618 Nov 26 18:08 heartbeat.json
[2025-11-26 18:09:25] -rw-r--r--. 1 boincer umatlas      8192 Nov 26 18:09 boinc_mmap_file
[2025-11-26 18:09:25] -rw-r--r--. 1 boincer umatlas        29 Nov 26 18:09 wrapper_checkpoint.txt
[2025-11-26 18:09:25] -rw-------. 1 boincer umatlas       823 Nov 26 18:09 pilotlog.txt
[2025-11-26 18:09:25] -rw-------. 1 boincer umatlas   8613919 Nov 26 18:09 log.47556161._001645.job.log.1
[2025-11-26 18:09:25] -rw-------. 1 boincer umatlas       353 Nov 26 18:09 output.list
[2025-11-26 18:09:25] -rw-r--r--. 1 boincer umatlas       620 Nov 26 18:09 runtime_log
[2025-11-26 18:09:25] -rw-------. 1 boincer umatlas  10967040 Nov 26 18:09 result.tar.gz
[2025-11-26 18:09:25] -rw-------. 1 boincer umatlas       661 Nov 26 18:09 tSbNDmUWBi8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmHUMKDmEvpqon.diag
[2025-11-26 18:09:25] -rw-r--r--. 1 boincer umatlas      9348 Nov 26 18:09 runtime_log.err
[2025-11-26 18:09:25] -rw-r--r--. 1 boincer umatlas     21357 Nov 26 18:09 stderr.txt
[2025-11-26 18:09:25] HITS file was successfully produced:
[2025-11-26 18:09:25] -rw-------. 1 boincer umatlas 916326321 Nov 26 18:07 shared/HITS.pool.root.1
[2025-11-26 18:09:25]  *** Contents of shared directory: ***
[2025-11-26 18:09:25] total 1307472
[2025-11-26 18:09:25] -rw-r--r--. 2 boincer umatlas 410932706 Nov 26 00:03 ATLAS.root_0
[2025-11-26 18:09:25] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 00:03 start_atlas.sh
[2025-11-26 18:09:25] -rw-r--r--. 2 boincer umatlas    590107 Nov 26 00:03 input.tar.gz
[2025-11-26 18:09:25] -rw-------. 1 boincer umatlas 916326321 Nov 26 18:07 HITS.pool.root.1
[2025-11-26 18:09:25] -rw-------. 1 boincer umatlas  10967040 Nov 26 18:09 result.tar.gz
18:09:27 (2504783): run_atlas exited; CPU time 236707.108909
18:09:27 (2504783): called boinc_finish(0)

</stderr_txt>
]]>

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