Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
21:48:37 (18062): wrapper (7.7.26015): starting
21:48:37 (18062): wrapper: running run_atlas (--nthreads 12)
[2025-11-25 21:48:37] Arguments: --nthreads 12
[2025-11-25 21:48:37] Threads: 12
[2025-11-25 21:48:37] Checking for CVMFS
[2025-11-25 21:48:37] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 21:48:37] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 21:48:37] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 21:48:38] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 21:48:38] 2.11.2.0 2979 287116 94224 153305 3 81 16247199 20275201 1 130560 1 128475309 99.975 16021099 13872 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-25 21:48:38] CVMFS is ok
[2025-11-25 21:48:38] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 21:48:38] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 21:48:38] Further information can be found at the LHC@home message board.
[2025-11-25 21:48:38] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 21:48:38] Checking for apptainer binary...
[2025-11-25 21:48:38] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 21:48:38] Running /usr/bin/apptainer --version
[2025-11-25 21:48:38] apptainer version 1.3.2-1.el7
[2025-11-25 21:48:38] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 21:48:39] c-205-21.aglt2.org
[2025-11-25 21:48:39] apptainer works
[2025-11-25 21:48:39] Set ATHENA_PROC_NUMBER=12
[2025-11-25 21:48:39] Set ATHENA_CORE_NUMBER=12
[2025-11-25 21:48:39] Starting ATLAS job with PandaID=6891570498
[2025-11-25 21:48:39] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
03:46:08 (29309): wrapper (7.7.26015): starting
03:46:08 (29309): wrapper: running run_atlas (--nthreads 12)
[2025-11-26 03:46:08] Arguments: --nthreads 12
[2025-11-26 03:46:08] Threads: 12
[2025-11-26 03:46:08] This job has been restarted, cleaning up previous attempt
[2025-11-26 03:46:08] Checking for CVMFS
[2025-11-26 03:46:08] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 03:46:09] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 03:46:09] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 03:46:09] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 03:46:09] 2.11.2.0 2979 287473 96224 153315 2 56 16681182 20275201 1 130560 1 128625349 99.975 16038125 13882 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-26 03:46:09] CVMFS is ok
[2025-11-26 03:46:09] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 03:46:09] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 03:46:09] Further information can be found at the LHC@home message board.
[2025-11-26 03:46:09] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 03:46:09] Checking for apptainer binary...
[2025-11-26 03:46:09] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 03:46:09] Running /usr/bin/apptainer --version
[2025-11-26 03:46:09] apptainer version 1.3.2-1.el7
[2025-11-26 03:46:09] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 03:46:10] c-205-21.aglt2.org
[2025-11-26 03:46:10] apptainer works
[2025-11-26 03:46:10] Set ATHENA_PROC_NUMBER=12
[2025-11-26 03:46:10] Set ATHENA_CORE_NUMBER=12
[2025-11-26 03:46:10] Starting ATLAS job with PandaID=6891570498
[2025-11-26 03:46:10] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 10:50:13]  *** The last 200 lines of the pilot log: ***
[2025-11-26 10:50:13] 2025-11-26 15:49:23,519 | INFO     | time since job start (25376s) is within the limit (172800.0s)
[2025-11-26 10:50:13] 2025-11-26 15:49:23,896 | INFO     | monitor loop #1903: job 0:6891570498 is in state 'finished'
[2025-11-26 10:50:13] 2025-11-26 15:49:23,897 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 10:50:13] 2025-11-26 15:49:25,524 | INFO     | time since job start (25378s) is within the limit (172800.0s)
[2025-11-26 10:50:13] 2025-11-26 15:49:26,341 | INFO     | CPU arch script returned: x86-64-v2
[2025-11-26 10:50:13] 2025-11-26 15:49:26,344 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1740.1666666666667
[2025-11-26 10:50:13] 2025-11-26 15:49:26,347 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6891570498/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 10:50:13] 2025-11-26 15:49:26,348 | INFO     | extracted standard info from prmon json
[2025-11-26 10:50:13] 2025-11-26 15:49:26,348 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 10:50:13] 2025-11-26 15:49:26,348 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 10:50:13] 2025-11-26 15:49:26,355 | INFO     | fitting pss+swap vs Time
[2025-11-26 10:50:13] 2025-11-26 15:49:26,356 | INFO     | sum of square deviations: 22323076455.375
[2025-11-26 10:50:13] 2025-11-26 15:49:26,359 | INFO     | sum of deviations: 303372625296.87537
[2025-11-26 10:50:13] 2025-11-26 15:49:26,360 | INFO     | mean x: 1764159474.6875
[2025-11-26 10:50:13] 2025-11-26 15:49:26,360 | INFO     | mean y: 3414411.860576923
[2025-11-26 10:50:13] 2025-11-26 15:49:26,360 | INFO     | intersect: -23971672191.824703
[2025-11-26 10:50:13] 2025-11-26 15:49:26,360 | INFO     | chi2: 6.841451978802546
[2025-11-26 10:50:13] 2025-11-26 15:49:26,361 | INFO     | sum of square deviations: 21527810915.19704
[2025-11-26 10:50:13] 2025-11-26 15:49:26,365 | INFO     | sum of deviations: 474934516312.92755
[2025-11-26 10:50:13] 2025-11-26 15:49:26,365 | INFO     | mean x: 1764159322.189781
[2025-11-26 10:50:13] 2025-11-26 15:49:26,365 | INFO     | mean y: 3447281.7445255476
[2025-11-26 10:50:13] 2025-11-26 15:49:26,365 | INFO     | intersect: -38916448367.825615
[2025-11-26 10:50:13] 2025-11-26 15:49:26,365 | INFO     | chi2: 3.357379175762318
[2025-11-26 10:50:13] 2025-11-26 15:49:26,366 | INFO     | current chi2=3.357379175762318 (change=50.92592645296975 %)
[2025-11-26 10:50:13] 2025-11-26 15:49:26,366 | INFO     | sum of square deviations: 20751662012.5147
[2025-11-26 10:50:13] 2025-11-26 15:49:26,370 | INFO     | sum of deviations: 542301966534.97076
[2025-11-26 10:50:13] 2025-11-26 15:49:26,370 | INFO     | mean x: 1764159169.6921182
[2025-11-26 10:50:13] 2025-11-26 15:49:26,370 | INFO     | mean y: 3460476.615763547
[2025-11-26 10:50:13] 2025-11-26 15:49:26,370 | INFO     | intersect: -46099207658.002846
[2025-11-26 10:50:13] 2025-11-26 15:49:26,371 | INFO     | chi2: 2.6065331754892327
[2025-11-26 10:50:13] 2025-11-26 15:49:26,371 | INFO     | current chi2=2.6065331754892327 (change=22.3640512723023 %)
[2025-11-26 10:50:13] 2025-11-26 15:49:26,371 | INFO     | right removable region: 405
[2025-11-26 10:50:13] 2025-11-26 15:49:26,371 | INFO     | sum of square deviations: 21527763335.19705
[2025-11-26 10:50:13] 2025-11-26 15:49:26,375 | INFO     | sum of deviations: 161410712460.05838
[2025-11-26 10:50:13] 2025-11-26 15:49:26,375 | INFO     | mean x: 1764159627.189781
[2025-11-26 10:50:13] 2025-11-26 15:49:26,375 | INFO     | mean y: 3441555.871046229
[2025-11-26 10:50:13] 2025-11-26 15:49:26,375 | INFO     | intersect: -13223862083.816013
[2025-11-26 10:50:13] 2025-11-26 15:49:26,376 | INFO     | chi2: 4.404184119333482
[2025-11-26 10:50:13] 2025-11-26 15:49:26,376 | INFO     | current chi2=4.404184119333482 (change=35.625008653435835 %)
[2025-11-26 10:50:13] 2025-11-26 15:49:26,376 | INFO     | sum of square deviations: 20751591678.896626
[2025-11-26 10:50:13] 2025-11-26 15:49:26,380 | INFO     | sum of deviations: 130513213023.51717
[2025-11-26 10:50:13] 2025-11-26 15:49:26,380 | INFO     | mean x: 1764159779.689655
[2025-11-26 10:50:13] 2025-11-26 15:49:26,380 | INFO     | mean y: 3447619.3374384237
[2025-11-26 10:50:13] 2025-11-26 15:49:26,380 | INFO     | intersect: -11091901821.655388
[2025-11-26 10:50:13] 2025-11-26 15:49:26,381 | INFO     | chi2: 4.3494763867187105
[2025-11-26 10:50:13] 2025-11-26 15:49:26,381 | INFO     | current chi2=4.3494763867187105 (change=1.2421763289735142 %)
[2025-11-26 10:50:13] 2025-11-26 15:49:26,381 | INFO     | left removable region: 20
[2025-11-26 10:50:13] 2025-11-26 15:49:26,382 | INFO     | sum of square deviations: 17695201407.77661
[2025-11-26 10:50:13] 2025-11-26 15:49:26,385 | INFO     | sum of deviations: 329853657825.6284
[2025-11-26 10:50:13] 2025-11-26 15:49:26,385 | INFO     | mean x: 1764159749.1922078
[2025-11-26 10:50:13] 2025-11-26 15:49:26,385 | INFO     | mean y: 3502989.342857143
[2025-11-26 10:50:13] 2025-11-26 15:49:26,385 | INFO     | intersect: -32881940518.751698
[2025-11-26 10:50:13] 2025-11-26 15:49:26,386 | INFO     | chi2: 0.048452573926948454
[2025-11-26 10:50:13] 2025-11-26 15:49:26,386 | INFO     | current memory leak: 18.64 B/s (using 385 data points, chi2=0.05)
[2025-11-26 10:50:13] 2025-11-26 15:49:26,386 | INFO     | could have reported an average CPU frequency of 2361 MHz (18 samples)
[2025-11-26 10:50:13] 2025-11-26 15:49:26,387 | INFO     | ..............................
[2025-11-26 10:50:13] 2025-11-26 15:49:26,387 | INFO     | . Timing measurements:
[2025-11-26 10:50:13] 2025-11-26 15:49:26,387 | INFO     | . get job = 0 s
[2025-11-26 10:50:13] 2025-11-26 15:49:26,387 | INFO     | . initial setup = 2 s
[2025-11-26 10:50:13] 2025-11-26 15:49:26,387 | INFO     | . payload setup = 7 s
[2025-11-26 10:50:13] 2025-11-26 15:49:26,387 | INFO     | . stage-in = 0 s
[2025-11-26 10:50:13] 2025-11-26 15:49:26,387 | INFO     | . payload execution = 25342 s
[2025-11-26 10:50:13] 2025-11-26 15:49:26,387 | INFO     | . stage-out = 3 s
[2025-11-26 10:50:13] 2025-11-26 15:49:26,387 | INFO     | . log creation = 0 s
[2025-11-26 10:50:13] 2025-11-26 15:49:26,387 | INFO     | ..............................
[2025-11-26 10:50:13] 2025-11-26 15:49:26,466 | INFO     | 
[2025-11-26 10:50:13] 2025-11-26 15:49:26,467 | INFO     | job summary report
[2025-11-26 10:50:13] 2025-11-26 15:49:26,467 | INFO     | --------------------------------------------------
[2025-11-26 10:50:13] 2025-11-26 15:49:26,467 | INFO     | PanDA job id: 6891570498
[2025-11-26 10:50:13] 2025-11-26 15:49:26,467 | INFO     | task id: 47493068
[2025-11-26 10:50:13] 2025-11-26 15:49:26,467 | INFO     | errors: (none)
[2025-11-26 10:50:13] 2025-11-26 15:49:26,467 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 10:50:13] 2025-11-26 15:49:26,468 | INFO     | pilot state: finished 
[2025-11-26 10:50:13] 2025-11-26 15:49:26,468 | INFO     | transexitcode: 0
[2025-11-26 10:50:13] 2025-11-26 15:49:26,468 | INFO     | exeerrorcode: 0
[2025-11-26 10:50:13] 2025-11-26 15:49:26,468 | INFO     | exeerrordiag: 
[2025-11-26 10:50:13] 2025-11-26 15:49:26,468 | INFO     | exitcode: 0
[2025-11-26 10:50:13] 2025-11-26 15:49:26,468 | INFO     | exitmsg: OK
[2025-11-26 10:50:13] 2025-11-26 15:49:26,468 | INFO     | cpuconsumptiontime: 290357 s
[2025-11-26 10:50:13] 2025-11-26 15:49:26,469 | INFO     | nevents: 1000
[2025-11-26 10:50:13] 2025-11-26 15:49:26,469 | INFO     | neventsw: 0
[2025-11-26 10:50:13] 2025-11-26 15:49:26,469 | INFO     | pid: 7463
[2025-11-26 10:50:13] 2025-11-26 15:49:26,469 | INFO     | pgrp: 7463
[2025-11-26 10:50:13] 2025-11-26 15:49:26,469 | INFO     | corecount: 12
[2025-11-26 10:50:13] 2025-11-26 15:49:26,469 | INFO     | event service: False
[2025-11-26 10:50:13] 2025-11-26 15:49:26,470 | INFO     | sizes: {0: 2284304, 5: 2284566, 11: 2284622, 25353: 2321707, 25357: 2330701, 25358: 2330757, 25363: 2331131}
[2025-11-26 10:50:13] 2025-11-26 15:49:26,470 | INFO     | --------------------------------------------------
[2025-11-26 10:50:13] 2025-11-26 15:49:26,470 | INFO     | 
[2025-11-26 10:50:13] 2025-11-26 15:49:26,470 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-26 10:50:13] 2025-11-26 15:49:26,494 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 10:50:13] 2025-11-26 15:49:26,494 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 10:50:13] 2025-11-26 15:49:26,494 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 10:50:13] 2025-11-26 15:49:26,494 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 10:50:13] 2025-11-26 15:49:26,495 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 10:50:13] 2025-11-26 15:49:26,495 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 10:50:13] 2025-11-26 15:49:26,495 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 10:50:13] 2025-11-26 15:49:26,495 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 10:50:13] 2025-11-26 15:49:26,495 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 10:50:13] 2025-11-26 15:49:26,495 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 10:50:13] 2025-11-26 15:49:26,496 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 10:50:13] 2025-11-26 15:49:26,496 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 10:50:13] 2025-11-26 15:49:26,496 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 10:50:13] 2025-11-26 15:49:26,496 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 10:50:13] 2025-11-26 15:49:26,496 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 10:50:13] 2025-11-26 15:49:26,496 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 10:50:13] 2025-11-26 15:49:26,497 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 10:50:13] 2025-11-26 15:49:26,497 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 10:50:13] 2025-11-26 15:49:26,497 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 10:50:13] 2025-11-26 15:49:26,497 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 10:50:13] 2025-11-26 15:49:26,497 | INFO     | job 6891570498 has completed (purged errors)
[2025-11-26 10:50:13] 2025-11-26 15:49:26,498 | INFO     | overall cleanup function is called
[2025-11-26 10:50:13] 2025-11-26 15:49:27,514 | INFO     | --- collectZombieJob: --- 10, [7463]
[2025-11-26 10:50:13] 2025-11-26 15:49:27,514 | INFO     | zombie collector waiting for pid 7463
[2025-11-26 10:50:13] 2025-11-26 15:49:27,515 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 10:50:13] 2025-11-26 15:49:27,515 | INFO     | collected zombie processes
[2025-11-26 10:50:13] 2025-11-26 15:49:27,515 | INFO     | will attempt to kill all subprocesses of pid=7463
[2025-11-26 10:50:13] 2025-11-26 15:49:27,604 | INFO     | process IDs to be killed: [7463] (in reverse order)
[2025-11-26 10:50:13] 2025-11-26 15:49:27,657 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 10:50:13] 2025-11-26 15:49:27,657 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 10:50:13] 2025-11-26 15:49:27,661 | INFO     | did not find any defunct processes belonging to 7463
[2025-11-26 10:50:13] 2025-11-26 15:49:27,663 | INFO     | did not find any defunct processes belonging to 7463
[2025-11-26 10:50:13] 2025-11-26 15:49:27,665 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 10:50:13] 2025-11-26 15:49:27,666 | INFO     | ready for new job
[2025-11-26 10:50:13] 2025-11-26 15:49:27,666 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 10:50:13] 2025-11-26 15:49:27,668 | INFO     | ***************************************
[2025-11-26 10:50:13] 2025-11-26 15:49:27,668 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 10:50:13] 2025-11-26 15:49:27,668 | INFO     | ***************************************
[2025-11-26 10:50:13] 2025-11-26 15:49:27,668 | INFO     | 
[2025-11-26 10:50:13] 2025-11-26 15:49:27,669 | INFO     | architecture information:
[2025-11-26 10:50:13] 2025-11-26 15:49:27,670 | INFO     | executing command: cat /etc/os-release
[2025-11-26 10:50:13] 2025-11-26 15:49:27,685 | INFO     | cat /etc/os-release:
[2025-11-26 10:50:13] NAME="CentOS Linux"
[2025-11-26 10:50:13] VERSION="7 (Core)"
[2025-11-26 10:50:13] ID="centos"
[2025-11-26 10:50:13] ID_LIKE="rhel fedora"
[2025-11-26 10:50:13] VERSION_ID="7"
[2025-11-26 10:50:13] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 10:50:13] ANSI_COLOR="0;31"
[2025-11-26 10:50:13] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 10:50:13] HOME_URL="https://www.centos.org/"
[2025-11-26 10:50:13] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 10:50:13] 
[2025-11-26 10:50:13] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 10:50:13] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 10:50:13] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 10:50:13] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 10:50:13] 
[2025-11-26 10:50:13] 2025-11-26 15:49:27,685 | INFO     | ***************************************
[2025-11-26 10:50:13] 2025-11-26 15:49:28,188 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-26 10:50:13] 2025-11-26 15:49:28,205 | INFO     | sufficient remaining disk space (28250734592 B)
[2025-11-26 10:50:13] 2025-11-26 15:49:28,206 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 10:50:13] 2025-11-26 15:49:28,206 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 10:50:13] 2025-11-26 15:49:28,206 | INFO     | update_server=False
[2025-11-26 10:50:13] 2025-11-26 15:49:28,206 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 10:50:13] 2025-11-26 15:49:28,207 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 10:50:13] 2025-11-26 15:49:28,207 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 10:50:13] 2025-11-26 15:49:28,207 | INFO     | aborting loop
[2025-11-26 10:50:13] 2025-11-26 15:49:28,207 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 10:50:13] 2025-11-26 15:49:28,447 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 10:50:13] 2025-11-26 15:49:28,781 | INFO     | all payload control threads have been joined
[2025-11-26 10:50:13] 2025-11-26 15:49:28,997 | INFO     | all job control threads have been joined
[2025-11-26 10:50:13] 2025-11-26 15:49:29,212 | INFO     | [job] retrieve thread has finished
[2025-11-26 10:50:13] 2025-11-26 15:49:29,213 | INFO     | [job] job monitor thread has finished
[2025-11-26 10:50:13] 2025-11-26 15:49:29,213 | INFO     | all data control threads have been joined
[2025-11-26 10:50:13] 2025-11-26 15:49:29,214 | INFO     | [job] queue monitor thread has finished
[2025-11-26 10:50:13] 2025-11-26 15:49:29,237 | INFO     | [payload] validate_post thread has finished
[2025-11-26 10:50:13] 2025-11-26 15:49:29,739 | INFO     | [payload] failed_post thread has finished
[2025-11-26 10:50:13] 2025-11-26 15:49:29,786 | INFO     | [payload] control thread has finished
[2025-11-26 10:50:13] 2025-11-26 15:49:29,851 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 10:50:13] 2025-11-26 15:49:29,855 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 10:50:13] 2025-11-26 15:49:29,955 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 10:50:13] 2025-11-26 15:49:30,003 | INFO     | [job] control thread has finished
[2025-11-26 10:50:13] 2025-11-26 15:49:30,110 | INFO     | [job] validate thread has finished
[2025-11-26 10:50:13] 2025-11-26 15:49:30,215 | INFO     | [data] control thread has finished
[2025-11-26 10:50:13] 2025-11-26 15:49:30,277 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 10:50:13] 2025-11-26 15:49:30,343 | INFO     | [data] copytool_in thread has finished
[2025-11-26 10:50:13] 2025-11-26 15:49:30,453 | INFO     | [data] copytool_out thread has finished
[2025-11-26 10:50:13] 2025-11-26 15:49:32,213 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 10:50:13] 2025-11-26 15:49:58,728 | INFO     | PID=921 has CPU usage=5.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -j
[2025-11-26 10:50:13] 2025-11-26 15:49:58,728 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 10:50:13] 2025-11-26 15:49:58,729 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 10:50:13] 2025-11-26 15:49:58,729 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 10:50:13] 2025-11-26 15:50:08,278 | INFO     | [monitor] cgroup control has ended
[2025-11-26 10:50:13] 2025-11-26 15:50:08,338 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140717998524224)>', '<ExcThread(monitor, started 140716676212480)>']
[2025-11-26 10:50:13] 2025-11-26 15:50:08,777 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 10:50:13] 2025-11-26 15:50:08,777 | INFO     | [monitor] control thread has ended
[2025-11-26 10:50:13] 2025-11-26 15:50:13,363 | INFO     | all workflow threads have been joined
[2025-11-26 10:50:13] 2025-11-26 15:50:13,363 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 10:50:13] 2025-11-26 15:50:13,364 | INFO     | traces error code: 0
[2025-11-26 10:50:13] 2025-11-26 15:50:13,364 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 10:50:13] 2025-11-26 15:50:13,457 [wrapper] ==== pilot stdout END ====
[2025-11-26 10:50:13] 2025-11-26 15:50:13,461 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 10:50:13] 2025-11-26 15:50:13,465 [wrapper] pilotpid: 921
[2025-11-26 10:50:13] 2025-11-26 15:50:13,469 [wrapper] Pilot exit status: 0
[2025-11-26 10:50:13] 2025-11-26 15:50:13,483 [wrapper] pandaids: 6891570498 6891570498
[2025-11-26 10:50:13] 2025-11-26 15:50:13,531 [wrapper] cleanup supervisor_pilot 22949 922
[2025-11-26 10:50:13] 2025-11-26 15:50:13,535 [wrapper] Test setup, not cleaning
[2025-11-26 10:50:13] 2025-11-26 15:50:13,539 [wrapper] apfmon messages muted
[2025-11-26 10:50:13] 2025-11-26 15:50:13,543 [wrapper] ==== wrapper stdout END ====
[2025-11-26 10:50:13] 2025-11-26 15:50:13,547 [wrapper] ==== wrapper stderr END ====
[2025-11-26 10:50:13]  *** Error codes and diagnostics ***
[2025-11-26 10:50:13]     "exeErrorCode": 0,
[2025-11-26 10:50:13]     "exeErrorDiag": "",
[2025-11-26 10:50:13]     "pilotErrorCode": 0,
[2025-11-26 10:50:13]     "pilotErrorDiag": "",
[2025-11-26 10:50:13]  *** Listing of results directory ***
[2025-11-26 10:50:13] total 1705352
[2025-11-26 10:50:13] drwx------ 5 boincer umatlas      4096 Nov  5 12:16 pilot3
[2025-11-26 10:50:13] -rw-r--r-- 1 boincer umatlas    576529 Nov 18 10:15 pilot3.tar.gz
[2025-11-26 10:50:13] -rw-r--r-- 1 boincer umatlas      5112 Nov 18 10:35 queuedata.json
[2025-11-26 10:50:13] -rwx------ 1 boincer umatlas     36292 Nov 18 10:37 runpilot2-wrapper.sh
[2025-11-26 10:50:13] -rw-r--r-- 1 boincer umatlas       100 Nov 25 21:48 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 10:50:13] -rwxr-xr-x 1 boincer umatlas      7986 Nov 25 21:48 run_atlas
[2025-11-26 10:50:13] -rw-r--r-- 1 boincer umatlas       105 Nov 25 21:48 job.xml
[2025-11-26 10:50:13] -rw-r--r-- 3 boincer umatlas 408595994 Nov 25 21:48 EVNT.47493065._000236.pool.root.1
[2025-11-26 10:50:13] -rw-r--r-- 3 boincer umatlas 408595994 Nov 25 21:48 ATLAS.root_0
[2025-11-26 10:50:13] -rw-r--r-- 2 boincer umatlas     15120 Nov 25 21:48 start_atlas.sh
[2025-11-26 10:50:13] drwxrwx--x 2 boincer umatlas      4096 Nov 25 21:48 shared
[2025-11-26 10:50:13] -rw-r--r-- 2 boincer umatlas    590100 Nov 25 21:48 input.tar.gz
[2025-11-26 10:50:13] -rw-r--r-- 1 boincer umatlas         0 Nov 25 21:48 boinc_lockfile
[2025-11-26 10:50:13] -rw-r--r-- 1 boincer umatlas      2773 Nov 26 03:46 pandaJob.out
[2025-11-26 10:50:13] -rw------- 1 boincer umatlas    991877 Nov 26 03:46 agis_schedconf.cvmfs.json
[2025-11-26 10:50:13] -rw-r--r-- 1 boincer umatlas       533 Nov 26 10:39 boinc_task_state.xml
[2025-11-26 10:50:13] -rw-r--r-- 1 boincer umatlas      5956 Nov 26 10:46 init_data.xml
[2025-11-26 10:50:13] -rw------- 1 boincer umatlas 913700598 Nov 26 10:48 HITS.47493068._002355.pool.root.1
[2025-11-26 10:50:13] -rw------- 1 boincer umatlas      1061 Nov 26 10:49 memory_monitor_summary.json
[2025-11-26 10:50:13] -rw------- 1 boincer umatlas   1516240 Nov 26 10:49 agis_ddmendpoints.agis.ALL.json
[2025-11-26 10:50:13] -rw------- 1 boincer umatlas   2188094 Nov 26 10:49 log.47493068._002355.job.log.tgz.1
[2025-11-26 10:50:13] -rw------- 1 boincer umatlas      8682 Nov 26 10:49 heartbeat.json
[2025-11-26 10:50:13] -rw------- 1 boincer umatlas        96 Nov 26 10:49 pilot_heartbeat.json
[2025-11-26 10:50:13] -rw-r--r-- 1 boincer umatlas        29 Nov 26 10:50 wrapper_checkpoint.txt
[2025-11-26 10:50:13] -rw-r--r-- 1 boincer umatlas      8192 Nov 26 10:50 boinc_mmap_file
[2025-11-26 10:50:13] -rw------- 1 boincer umatlas      4744 Nov 26 10:50 pilotlog.txt
[2025-11-26 10:50:13] -rw------- 1 boincer umatlas   3547549 Nov 26 10:50 log.47493068._002355.job.log.1
[2025-11-26 10:50:13] -rw------- 1 boincer umatlas       353 Nov 26 10:50 output.list
[2025-11-26 10:50:13] -rw-r--r-- 1 boincer umatlas       620 Nov 26 10:50 runtime_log
[2025-11-26 10:50:13] -rw------- 1 boincer umatlas   5754880 Nov 26 10:50 result.tar.gz
[2025-11-26 10:50:13] -rw-r--r-- 1 boincer umatlas      8791 Nov 26 10:50 runtime_log.err
[2025-11-26 10:50:13] -rw------- 1 boincer umatlas       795 Nov 26 10:50 pC6MDmpwcf8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmpaFKDm0kwcOn.diag
[2025-11-26 10:50:13] -rw-r--r-- 1 boincer umatlas     23467 Nov 26 10:50 stderr.txt
[2025-11-26 10:50:13] HITS file was successfully produced:
[2025-11-26 10:50:13] -rw------- 1 boincer umatlas 913700598 Nov 26 10:48 shared/HITS.pool.root.1
[2025-11-26 10:50:13]  *** Contents of shared directory: ***
[2025-11-26 10:50:13] total 1297528
[2025-11-26 10:50:13] -rw-r--r-- 3 boincer umatlas 408595994 Nov 25 21:48 ATLAS.root_0
[2025-11-26 10:50:13] -rw-r--r-- 2 boincer umatlas     15120 Nov 25 21:48 start_atlas.sh
[2025-11-26 10:50:13] -rw-r--r-- 2 boincer umatlas    590100 Nov 25 21:48 input.tar.gz
[2025-11-26 10:50:13] -rw------- 1 boincer umatlas 913700598 Nov 26 10:48 HITS.pool.root.1
[2025-11-26 10:50:13] -rw------- 1 boincer umatlas   5754880 Nov 26 10:50 result.tar.gz
10:50:15 (29309): run_atlas exited; CPU time 283793.886231
10:50:15 (29309): called boinc_finish(0)

</stderr_txt>
]]>

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