Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
22:01:26 (3268348): wrapper (7.7.26015): starting
22:01:26 (3268348): wrapper: running run_atlas (--nthreads 8)
[2025-11-25 22:01:26] Arguments: --nthreads 8
[2025-11-25 22:01:26] Threads: 8
[2025-11-25 22:01:26] Checking for CVMFS
[2025-11-25 22:01:26] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 22:01:27] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 22:01:27] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 22:01:28] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 22:01:28] 2.13.3.0 10978 29437 347964 153305 2 342 40155991 40960001 14581 16776704 0 66989001 99.576 89249821 39328 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-25 22:01:28] CVMFS is ok
[2025-11-25 22:01:28] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 22:01:28] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 22:01:28] Further information can be found at the LHC@home message board.
[2025-11-25 22:01:28] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 22:01:28] Checking for apptainer binary...
[2025-11-25 22:01:28] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 22:01:28] Running /usr/bin/apptainer --version
[2025-11-25 22:01:28] apptainer version 1.4.4-1.el9
[2025-11-25 22:01:28] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 22:01:29] c6-8-12-1.aglt2.org
[2025-11-25 22:01:29] apptainer works
[2025-11-25 22:01:29] Set ATHENA_PROC_NUMBER=8
[2025-11-25 22:01:29] Set ATHENA_CORE_NUMBER=8
[2025-11-25 22:01:29] Starting ATLAS job with PandaID=6897139726
[2025-11-25 22:01:29] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 03:10:12]  *** The last 200 lines of the pilot log: ***
[2025-11-27 03:10:12] 2025-11-27 08:09:19,873 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 03:10:12] 2025-11-27 08:09:21,656 | INFO     | time since job start (104789s) is within the limit (172800.0s)
[2025-11-27 03:10:12] 2025-11-27 08:09:22,379 | INFO     | monitor loop #6203: job 0:6897139726 is in state 'finished'
[2025-11-27 03:10:12] 2025-11-27 08:09:22,379 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 03:10:12] 2025-11-27 08:09:23,664 | INFO     | time since job start (104791s) is within the limit (172800.0s)
[2025-11-27 03:10:12] 2025-11-27 08:09:24,886 | INFO     | monitor loop #6204: job 0:6897139726 is in state 'finished'
[2025-11-27 03:10:12] 2025-11-27 08:09:24,886 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 03:10:12] 2025-11-27 08:09:25,677 | INFO     | time since job start (104793s) is within the limit (172800.0s)
[2025-11-27 03:10:12] 2025-11-27 08:09:27,398 | INFO     | monitor loop #6205: job 0:6897139726 is in state 'finished'
[2025-11-27 03:10:12] 2025-11-27 08:09:27,398 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 03:10:12] 2025-11-27 08:09:27,684 | INFO     | time since job start (104795s) is within the limit (172800.0s)
[2025-11-27 03:10:12] 2025-11-27 08:09:29,691 | INFO     | time since job start (104797s) is within the limit (172800.0s)
[2025-11-27 03:10:12] 2025-11-27 08:09:29,903 | INFO     | monitor loop #6206: job 0:6897139726 is in state 'finished'
[2025-11-27 03:10:12] 2025-11-27 08:09:29,903 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 03:10:12] 2025-11-27 08:09:31,228 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-27 03:10:12] 2025-11-27 08:09:31,237 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 2897.180214285713
[2025-11-27 03:10:12] 2025-11-27 08:09:31,246 | INFO     | using path: /tmp/boinchome/slots/3/PanDA_Pilot-6897139726/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 03:10:12] 2025-11-27 08:09:31,247 | INFO     | extracted standard info from prmon json
[2025-11-27 03:10:12] 2025-11-27 08:09:31,247 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 03:10:12] 2025-11-27 08:09:31,247 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 03:10:12] 2025-11-27 08:09:31,278 | INFO     | fitting pss+swap vs Time
[2025-11-27 03:10:12] 2025-11-27 08:09:31,281 | INFO     | sum of square deviations: 1564087820967.0745
[2025-11-27 03:10:12] 2025-11-27 08:09:31,351 | INFO     | sum of deviations: 6750709557029.005
[2025-11-27 03:10:12] 2025-11-27 08:09:31,351 | INFO     | mean x: 1764178650.083382
[2025-11-27 03:10:12] 2025-11-27 08:09:31,351 | INFO     | mean y: 2922005.8670553938
[2025-11-27 03:10:12] 2025-11-27 08:09:31,352 | INFO     | intersect: -7611393196.754244
[2025-11-27 03:10:12] 2025-11-27 08:09:31,354 | INFO     | chi2: 22.82194907809407
[2025-11-27 03:10:12] 2025-11-27 08:09:31,357 | INFO     | sum of square deviations: 1550449431275.9749
[2025-11-27 03:10:12] 2025-11-27 08:09:31,446 | INFO     | sum of deviations: 7318479869155.136
[2025-11-27 03:10:12] 2025-11-27 08:09:31,446 | INFO     | mean x: 1764178497.5953217
[2025-11-27 03:10:12] 2025-11-27 08:09:31,446 | INFO     | mean y: 2928353.09122807
[2025-11-27 03:10:12] 2025-11-27 08:09:31,446 | INFO     | intersect: -8324402135.606007
[2025-11-27 03:10:12] 2025-11-27 08:09:31,449 | INFO     | chi2: 19.871556195481666
[2025-11-27 03:10:12] 2025-11-27 08:09:31,449 | INFO     | current chi2=19.871556195481666 (change=12.927874269268159 %)
[2025-11-27 03:10:12] 2025-11-27 08:09:31,449 | INFO     | right removable region: 1709
[2025-11-27 03:10:12] 2025-11-27 08:09:31,452 | INFO     | sum of square deviations: 1550445159445.974
[2025-11-27 03:10:12] 2025-11-27 08:09:31,517 | INFO     | sum of deviations: 6014026163475.857
[2025-11-27 03:10:12] 2025-11-27 08:09:31,517 | INFO     | mean x: 1764178802.5953217
[2025-11-27 03:10:12] 2025-11-27 08:09:31,517 | INFO     | mean y: 2930240.8321637427
[2025-11-27 03:10:12] 2025-11-27 08:09:31,517 | INFO     | intersect: -6840147962.365308
[2025-11-27 03:10:12] 2025-11-27 08:09:31,519 | INFO     | chi2: 18.04070871449309
[2025-11-27 03:10:12] 2025-11-27 08:09:31,520 | INFO     | current chi2=18.04070871449309 (change=20.950184172439133 %)
[2025-11-27 03:10:12] 2025-11-27 08:09:31,520 | INFO     | left removable region: 10
[2025-11-27 03:10:12] 2025-11-27 08:09:31,522 | INFO     | sum of square deviations: 1520716070885.781
[2025-11-27 03:10:12] 2025-11-27 08:09:31,575 | INFO     | sum of deviations: 6012570354237.68
[2025-11-27 03:10:12] 2025-11-27 08:09:31,576 | INFO     | mean x: 1764178772.1218364
[2025-11-27 03:10:12] 2025-11-27 08:09:31,576 | INFO     | mean y: 2945498.103001766
[2025-11-27 03:10:12] 2025-11-27 08:09:31,576 | INFO     | intersect: -6972221785.199735
[2025-11-27 03:10:12] 2025-11-27 08:09:31,578 | INFO     | chi2: 10.591079660043153
[2025-11-27 03:10:12] 2025-11-27 08:09:31,578 | INFO     | current memory leak: 3.95 B/s (using 1699 data points, chi2=10.59)
[2025-11-27 03:10:12] 2025-11-27 08:09:31,580 | INFO     | could have reported an average CPU frequency of 2918 MHz (60 samples)
[2025-11-27 03:10:12] 2025-11-27 08:09:31,580 | INFO     | ..............................
[2025-11-27 03:10:12] 2025-11-27 08:09:31,580 | INFO     | . Timing measurements:
[2025-11-27 03:10:12] 2025-11-27 08:09:31,580 | INFO     | . get job = 0 s
[2025-11-27 03:10:12] 2025-11-27 08:09:31,580 | INFO     | . initial setup = 5 s
[2025-11-27 03:10:12] 2025-11-27 08:09:31,580 | INFO     | . payload setup = 74 s
[2025-11-27 03:10:12] 2025-11-27 08:09:31,581 | INFO     | . stage-in = 0 s
[2025-11-27 03:10:12] 2025-11-27 08:09:31,581 | INFO     | . payload execution = 104601 s
[2025-11-27 03:10:12] 2025-11-27 08:09:31,581 | INFO     | . stage-out = 8 s
[2025-11-27 03:10:12] 2025-11-27 08:09:31,581 | INFO     | . log creation = 2 s
[2025-11-27 03:10:12] 2025-11-27 08:09:31,581 | INFO     | ..............................
[2025-11-27 03:10:12] 2025-11-27 08:09:31,697 | INFO     | 
[2025-11-27 03:10:12] 2025-11-27 08:09:31,698 | INFO     | job summary report
[2025-11-27 03:10:12] 2025-11-27 08:09:31,698 | INFO     | --------------------------------------------------
[2025-11-27 03:10:12] 2025-11-27 08:09:31,698 | INFO     | PanDA job id: 6897139726
[2025-11-27 03:10:12] 2025-11-27 08:09:31,698 | INFO     | task id: 47556161
[2025-11-27 03:10:12] 2025-11-27 08:09:31,698 | INFO     | errors: (none)
[2025-11-27 03:10:12] 2025-11-27 08:09:31,698 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 03:10:12] 2025-11-27 08:09:31,698 | INFO     | pilot state: finished 
[2025-11-27 03:10:12] 2025-11-27 08:09:31,698 | INFO     | transexitcode: 0
[2025-11-27 03:10:12] 2025-11-27 08:09:31,698 | INFO     | exeerrorcode: 0
[2025-11-27 03:10:12] 2025-11-27 08:09:31,699 | INFO     | exeerrordiag: 
[2025-11-27 03:10:12] 2025-11-27 08:09:31,699 | INFO     | exitcode: 0
[2025-11-27 03:10:12] 2025-11-27 08:09:31,699 | INFO     | exitmsg: OK
[2025-11-27 03:10:12] 2025-11-27 08:09:31,699 | INFO     | cpuconsumptiontime: 241598 s
[2025-11-27 03:10:12] 2025-11-27 08:09:31,699 | INFO     | nevents: 1000
[2025-11-27 03:10:12] 2025-11-27 08:09:31,699 | INFO     | neventsw: 0
[2025-11-27 03:10:12] 2025-11-27 08:09:31,699 | INFO     | pid: 3299155
[2025-11-27 03:10:12] 2025-11-27 08:09:31,699 | INFO     | pgrp: 3299155
[2025-11-27 03:10:12] 2025-11-27 08:09:31,716 | INFO     | corecount: 8
[2025-11-27 03:10:12] 2025-11-27 08:09:31,716 | INFO     | event service: False
[2025-11-27 03:10:12] 2025-11-27 08:09:31,716 | INFO     | sizes: {0: 2284094, 1: 2284293, 12: 2284293, 23: 2284321, 34: 2284349, 41: 2284639, 44: 2284795, 104680: 2358197, 104689: 2367191, 104691: 2367247, 104717: 2367493
[2025-11-27 03:10:12] 2025-11-27 08:09:31,716 | INFO     | --------------------------------------------------
[2025-11-27 03:10:12] 2025-11-27 08:09:31,716 | INFO     | 
[2025-11-27 03:10:12] 2025-11-27 08:09:31,716 | INFO     | executing command: ls -lF /tmp/boinchome/slots/3
[2025-11-27 03:10:12] 2025-11-27 08:09:31,702 | INFO     | time since job start (104799s) is within the limit (172800.0s)
[2025-11-27 03:10:12] 2025-11-27 08:09:31,809 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 03:10:12] 2025-11-27 08:09:31,809 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 03:10:12] 2025-11-27 08:09:31,809 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 03:10:12] 2025-11-27 08:09:31,809 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 03:10:12] 2025-11-27 08:09:31,809 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 03:10:12] 2025-11-27 08:09:31,809 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 03:10:12] 2025-11-27 08:09:31,810 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 03:10:12] 2025-11-27 08:09:31,810 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 03:10:12] 2025-11-27 08:09:31,810 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 03:10:12] 2025-11-27 08:09:31,810 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 03:10:12] 2025-11-27 08:09:31,810 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 03:10:12] 2025-11-27 08:09:31,810 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 03:10:12] 2025-11-27 08:09:31,810 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 03:10:12] 2025-11-27 08:09:31,810 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 03:10:12] 2025-11-27 08:09:31,810 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 03:10:12] 2025-11-27 08:09:31,810 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 03:10:12] 2025-11-27 08:09:31,810 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 03:10:12] 2025-11-27 08:09:31,810 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 03:10:12] 2025-11-27 08:09:31,810 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 03:10:12] 2025-11-27 08:09:31,810 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 03:10:12] 2025-11-27 08:09:31,826 | INFO     | job 6897139726 has completed (purged errors)
[2025-11-27 03:10:12] 2025-11-27 08:09:31,826 | INFO     | overall cleanup function is called
[2025-11-27 03:10:12] 2025-11-27 08:09:32,863 | INFO     | --- collectZombieJob: --- 10, [3299155]
[2025-11-27 03:10:12] 2025-11-27 08:09:32,865 | INFO     | zombie collector waiting for pid 3299155
[2025-11-27 03:10:12] 2025-11-27 08:09:32,865 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 03:10:12] 2025-11-27 08:09:32,865 | INFO     | collected zombie processes
[2025-11-27 03:10:12] 2025-11-27 08:09:32,865 | INFO     | will attempt to kill all subprocesses of pid=3299155
[2025-11-27 03:10:12] 2025-11-27 08:09:33,788 | INFO     | PID=3282373 has CPU usage=5.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 03:10:12] 2025-11-27 08:09:33,788 | INFO     | .. there are 17 such processes running
[2025-11-27 03:10:12] 2025-11-27 08:09:33,883 | INFO     | process IDs to be killed: [3299155] (in reverse order)
[2025-11-27 03:10:12] 2025-11-27 08:09:34,037 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 03:10:12] 2025-11-27 08:09:34,037 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 03:10:12] 2025-11-27 08:09:34,070 | INFO     | did not find any defunct processes belonging to 3299155
[2025-11-27 03:10:12] 2025-11-27 08:09:34,089 | INFO     | did not find any defunct processes belonging to 3299155
[2025-11-27 03:10:12] 2025-11-27 08:09:34,090 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 03:10:12] 2025-11-27 08:09:34,093 | INFO     | ready for new job
[2025-11-27 03:10:12] 2025-11-27 08:09:34,093 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 03:10:12] 2025-11-27 08:09:34,157 | INFO     | ***************************************
[2025-11-27 03:10:12] 2025-11-27 08:09:34,158 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 03:10:12] 2025-11-27 08:09:34,158 | INFO     | ***************************************
[2025-11-27 03:10:12] 2025-11-27 08:09:34,158 | INFO     | 
[2025-11-27 03:10:12] 2025-11-27 08:09:34,184 | INFO     | architecture information:
[2025-11-27 03:10:12] 2025-11-27 08:09:34,195 | INFO     | executing command: cat /etc/os-release
[2025-11-27 03:10:12] 2025-11-27 08:09:34,255 | INFO     | cat /etc/os-release:
[2025-11-27 03:10:12] NAME="CentOS Linux"
[2025-11-27 03:10:12] VERSION="7 (Core)"
[2025-11-27 03:10:12] ID="centos"
[2025-11-27 03:10:12] ID_LIKE="rhel fedora"
[2025-11-27 03:10:12] VERSION_ID="7"
[2025-11-27 03:10:12] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 03:10:12] ANSI_COLOR="0;31"
[2025-11-27 03:10:12] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 03:10:12] HOME_URL="https://www.centos.org/"
[2025-11-27 03:10:12] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 03:10:12] 
[2025-11-27 03:10:12] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 03:10:12] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 03:10:12] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 03:10:12] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 03:10:12] 
[2025-11-27 03:10:12] 2025-11-27 08:09:34,255 | INFO     | ***************************************
[2025-11-27 03:10:12] 2025-11-27 08:09:34,758 | INFO     | executing command: df -mP /tmp/boinchome/slots/3
[2025-11-27 03:10:12] 2025-11-27 08:09:34,964 | INFO     | sufficient remaining disk space (56169070592 B)
[2025-11-27 03:10:12] 2025-11-27 08:09:34,964 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 03:10:12] 2025-11-27 08:09:34,964 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 03:10:12] 2025-11-27 08:09:34,964 | INFO     | update_server=False
[2025-11-27 03:10:12] 2025-11-27 08:09:34,965 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 03:10:12] 2025-11-27 08:09:34,980 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 03:10:12] 2025-11-27 08:09:34,980 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 03:10:12] 2025-11-27 08:09:35,187 | INFO     | all data control threads have been joined
[2025-11-27 03:10:12] 2025-11-27 08:09:35,924 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 03:10:12] 2025-11-27 08:09:35,924 | INFO     | aborting loop
[2025-11-27 03:10:12] 2025-11-27 08:09:35,971 | INFO     | [job] retrieve thread has finished
[2025-11-27 03:10:12] 2025-11-27 08:09:36,036 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 03:10:12] 2025-11-27 08:09:36,193 | INFO     | [data] control thread has finished
[2025-11-27 03:10:12] 2025-11-27 08:09:36,203 | INFO     | all payload control threads have been joined
[2025-11-27 03:10:12] 2025-11-27 08:09:36,260 | INFO     | all job control threads have been joined
[2025-11-27 03:10:12] 2025-11-27 08:09:36,680 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 03:10:12] 2025-11-27 08:09:36,712 | INFO     | [payload] failed_post thread has finished
[2025-11-27 03:10:12] 2025-11-27 08:09:36,765 | INFO     | [job] validate thread has finished
[2025-11-27 03:10:12] 2025-11-27 08:09:36,771 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 03:10:12] 2025-11-27 08:09:36,778 | INFO     | [data] copytool_in thread has finished
[2025-11-27 03:10:12] 2025-11-27 08:09:36,823 | INFO     | [payload] validate_post thread has finished
[2025-11-27 03:10:12] 2025-11-27 08:09:36,930 | INFO     | [job] job monitor thread has finished
[2025-11-27 03:10:12] 2025-11-27 08:09:36,989 | INFO     | [data] copytool_out thread has finished
[2025-11-27 03:10:12] 2025-11-27 08:09:37,209 | INFO     | [payload] control thread has finished
[2025-11-27 03:10:12] 2025-11-27 08:09:37,266 | INFO     | [job] control thread has finished
[2025-11-27 03:10:12] 2025-11-27 08:09:37,363 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 03:10:12] 2025-11-27 08:09:37,382 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 03:10:12] 2025-11-27 08:09:37,686 | INFO     | [job] queue monitor thread has finished
[2025-11-27 03:10:12] 2025-11-27 08:09:38,992 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 03:10:12] 2025-11-27 08:10:05,228 | INFO     | [monitor] cgroup control has ended
[2025-11-27 03:10:12] 2025-11-27 08:10:05,601 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139725223540544)>', '<ExcThread(monitor, started 139724706522880)>']
[2025-11-27 03:10:12] 2025-11-27 08:10:08,601 | INFO     | PID=3282373 has CPU usage=2.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 03:10:12] 2025-11-27 08:10:08,601 | INFO     | .. there are 17 such processes running
[2025-11-27 03:10:12] 2025-11-27 08:10:08,601 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 03:10:12] 2025-11-27 08:10:08,601 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 03:10:12] 2025-11-27 08:10:08,601 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 03:10:12] 2025-11-27 08:10:08,602 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 03:10:12] 2025-11-27 08:10:08,602 | INFO     | [monitor] control thread has ended
[2025-11-27 03:10:12] 2025-11-27 08:10:10,627 | INFO     | all workflow threads have been joined
[2025-11-27 03:10:12] 2025-11-27 08:10:10,627 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 03:10:12] 2025-11-27 08:10:10,627 | INFO     | traces error code: 0
[2025-11-27 03:10:12] 2025-11-27 08:10:10,627 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 03:10:12] 2025-11-27 08:10:11,163 [wrapper] ==== pilot stdout END ====
[2025-11-27 03:10:12] 2025-11-27 08:10:11,166 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 03:10:12] 2025-11-27 08:10:11,174 [wrapper] pilotpid: 3282373
[2025-11-27 03:10:12] 2025-11-27 08:10:11,178 [wrapper] Pilot exit status: 0
[2025-11-27 03:10:12] 2025-11-27 08:10:11,286 [wrapper] pandaids: 6897139726
[2025-11-27 03:10:12] 2025-11-27 08:10:11,498 [wrapper] cleanup supervisor_pilot 3625210 3282374
[2025-11-27 03:10:12] 2025-11-27 08:10:11,523 [wrapper] Test setup, not cleaning
[2025-11-27 03:10:12] 2025-11-27 08:10:11,546 [wrapper] apfmon messages muted
[2025-11-27 03:10:12] 2025-11-27 08:10:11,569 [wrapper] ==== wrapper stdout END ====
[2025-11-27 03:10:12] 2025-11-27 08:10:11,584 [wrapper] ==== wrapper stderr END ====
[2025-11-27 03:10:12]  *** Error codes and diagnostics ***
[2025-11-27 03:10:12]     "exeErrorCode": 0,
[2025-11-27 03:10:12]     "exeErrorDiag": "",
[2025-11-27 03:10:12]     "pilotErrorCode": 0,
[2025-11-27 03:10:12]     "pilotErrorDiag": "",
[2025-11-27 03:10:12]  *** Listing of results directory ***
[2025-11-27 03:10:12] total 1326552
[2025-11-27 03:10:12] -rw-r--r--. 1 boincer umatlas    576529 Nov 25 11:48 pilot3.tar.gz
[2025-11-27 03:10:12] -rw-r--r--. 1 boincer umatlas      5112 Nov 25 11:55 queuedata.json
[2025-11-27 03:10:12] -rwx------. 1 boincer umatlas     36292 Nov 25 11:56 runpilot2-wrapper.sh
[2025-11-27 03:10:12] -rw-r--r--. 1 boincer umatlas       100 Nov 25 22:01 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 03:10:12] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 25 22:01 run_atlas
[2025-11-27 03:10:12] -rw-r--r--. 1 boincer umatlas       105 Nov 25 22:01 job.xml
[2025-11-27 03:10:12] -rw-r--r--. 2 boincer umatlas 408176630 Nov 25 22:01 EVNT.47483658._002197.pool.root.1
[2025-11-27 03:10:12] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 22:01 start_atlas.sh
[2025-11-27 03:10:12] drwxrwx--x. 2 boincer umatlas      4096 Nov 25 22:01 shared
[2025-11-27 03:10:12] -rw-r--r--. 2 boincer umatlas    590111 Nov 25 22:01 input.tar.gz
[2025-11-27 03:10:12] -rw-r--r--. 1 boincer umatlas         0 Nov 25 22:01 boinc_lockfile
[2025-11-27 03:10:12] -rw-r--r--. 1 boincer umatlas      2786 Nov 25 22:01 pandaJob.out
[2025-11-27 03:10:12] -rw-------. 1 boincer umatlas        57 Nov 25 22:01 setup.sh.local
[2025-11-27 03:10:12] -rw-------. 1 boincer umatlas    991877 Nov 25 22:02 agis_schedconf.cvmfs.json
[2025-11-27 03:10:12] drwx------. 5 boincer umatlas      4096 Nov 25 22:02 pilot3
[2025-11-27 03:10:12] -rw-r--r--. 1 boincer umatlas       533 Nov 27 02:42 boinc_task_state.xml
[2025-11-27 03:10:12] -rw-------. 1 boincer umatlas 914728030 Nov 27 03:08 HITS.47556161._001806.pool.root.1
[2025-11-27 03:10:12] -rw-------. 1 boincer umatlas      1058 Nov 27 03:08 memory_monitor_summary.json
[2025-11-27 03:10:12] -rw-------. 1 boincer umatlas   1516240 Nov 27 03:08 agis_ddmendpoints.agis.ALL.json
[2025-11-27 03:10:12] -rw-------. 1 boincer umatlas   2651014 Nov 27 03:09 log.47556161._001806.job.log.tgz.1
[2025-11-27 03:10:12] -rw-------. 1 boincer umatlas        95 Nov 27 03:09 pilot_heartbeat.json
[2025-11-27 03:10:12] -rw-------. 1 boincer umatlas      8623 Nov 27 03:09 heartbeat.json
[2025-11-27 03:10:12] -rw-r--r--. 1 boincer umatlas      6845 Nov 27 03:09 init_data.xml
[2025-11-27 03:10:12] -rw-r--r--. 1 boincer umatlas      8192 Nov 27 03:10 boinc_mmap_file
[2025-11-27 03:10:12] -rw-r--r--. 1 boincer umatlas        29 Nov 27 03:10 wrapper_checkpoint.txt
[2025-11-27 03:10:12] -rw-------. 1 boincer umatlas      4824 Nov 27 03:10 pilotlog.txt
[2025-11-27 03:10:12] -rw-------. 1 boincer umatlas  13130454 Nov 27 03:10 log.47556161._001806.job.log.1
[2025-11-27 03:10:12] -rw-------. 1 boincer umatlas       353 Nov 27 03:10 output.list
[2025-11-27 03:10:12] -rw-r--r--. 1 boincer umatlas       620 Nov 27 03:10 runtime_log
[2025-11-27 03:10:12] -rw-------. 1 boincer umatlas  15800320 Nov 27 03:10 result.tar.gz
[2025-11-27 03:10:12] -rw-r--r--. 1 boincer umatlas      9349 Nov 27 03:10 runtime_log.err
[2025-11-27 03:10:12] -rw-------. 1 boincer umatlas       664 Nov 27 03:10 Ep8NDmbWBi8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmLYJKDm189rhn.diag
[2025-11-27 03:10:12] -rw-r--r--. 1 boincer umatlas     21902 Nov 27 03:10 stderr.txt
[2025-11-27 03:10:12] HITS file was successfully produced:
[2025-11-27 03:10:12] -rw-------. 1 boincer umatlas 914728030 Nov 27 03:08 shared/HITS.pool.root.1
[2025-11-27 03:10:12]  *** Contents of shared directory: ***
[2025-11-27 03:10:12] total 1307936
[2025-11-27 03:10:12] -rw-r--r--. 2 boincer umatlas 408176630 Nov 25 22:01 ATLAS.root_0
[2025-11-27 03:10:12] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 22:01 start_atlas.sh
[2025-11-27 03:10:12] -rw-r--r--. 2 boincer umatlas    590111 Nov 25 22:01 input.tar.gz
[2025-11-27 03:10:12] -rw-------. 1 boincer umatlas 914728030 Nov 27 03:08 HITS.pool.root.1
[2025-11-27 03:10:12] -rw-------. 1 boincer umatlas  15800320 Nov 27 03:10 result.tar.gz
03:10:14 (3268348): run_atlas exited; CPU time 244109.413988
03:10:14 (3268348): called boinc_finish(0)

</stderr_txt>
]]>

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