Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:04:16 (1247467): wrapper (7.7.26015): starting
00:04:16 (1247467): wrapper: running run_atlas (--nthreads 9)
[2025-11-26 00:04:16] Arguments: --nthreads 9
[2025-11-26 00:04:16] Threads: 9
[2025-11-26 00:04:16] Checking for CVMFS
[2025-11-26 00:04:16] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 00:04:16] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 00:04:16] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 00:04:16] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 00:04:16] 2.13.2.0 7153 35392 236352 153309 0 317 34556111 40960000 37713 16776704 0 128593885 99.552 140309395 33879 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-26 00:04:16] CVMFS is ok
[2025-11-26 00:04:16] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 00:04:16] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 00:04:16] Further information can be found at the LHC@home message board.
[2025-11-26 00:04:16] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 00:04:16] Checking for apptainer binary...
[2025-11-26 00:04:16] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 00:04:16] Running /usr/bin/apptainer --version
[2025-11-26 00:04:17] apptainer version 1.4.4-1.el9
[2025-11-26 00:04:17] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 00:04:17] c-212-15.aglt2.org
[2025-11-26 00:04:17] apptainer works
[2025-11-26 00:04:17] Set ATHENA_PROC_NUMBER=9
[2025-11-26 00:04:17] Set ATHENA_CORE_NUMBER=9
[2025-11-26 00:04:17] Starting ATLAS job with PandaID=6896990437
[2025-11-26 00:04:17] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/9 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 00:54:32]  *** The last 200 lines of the pilot log: ***
[2025-11-27 00:54:32] 2025-11-27 05:53:39,473 | INFO     | job 6896990437 has state=finished
[2025-11-27 00:54:32] 2025-11-27 05:53:39,473 | INFO     | preparing for final server update for job 6896990437 in state='finished'
[2025-11-27 00:54:32] 2025-11-27 05:53:39,473 | INFO     | this job has now completed (state=finished)
[2025-11-27 00:54:32] 2025-11-27 05:53:39,473 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-11-27 00:54:32] 2025-11-27 05:53:39,473 | INFO     | log transfer has been attempted: DONE
[2025-11-27 00:54:32] 2025-11-27 05:53:39,473 | INFO     | job 6896990437 has finished - writing final server update
[2025-11-27 00:54:32] 2025-11-27 05:53:39,474 | INFO     | total number of processed events: 1000 (read)
[2025-11-27 00:54:32] 2025-11-27 05:53:39,474 | INFO     | executing command: lscpu
[2025-11-27 00:54:32] 2025-11-27 05:53:39,555 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-11-27 00:54:32] 2025-11-27 05:53:40,839 | INFO     | PID=1267537 has CPU usage=20.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-11-27 00:54:32] 2025-11-27 05:53:40,839 | INFO     | .. there are 50 such processes running
[2025-11-27 00:54:32] 2025-11-27 05:53:40,983 | INFO     | monitor loop #5960: job 0:6896990437 is in state 'finished'
[2025-11-27 00:54:32] 2025-11-27 05:53:40,983 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 00:54:32] 2025-11-27 05:53:41,840 | INFO     | time since job start (89330s) is within the limit (172800.0s)
[2025-11-27 00:54:32] 2025-11-27 05:53:43,488 | INFO     | monitor loop #5961: job 0:6896990437 is in state 'finished'
[2025-11-27 00:54:32] 2025-11-27 05:53:43,488 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 00:54:32] 2025-11-27 05:53:43,845 | INFO     | time since job start (89332s) is within the limit (172800.0s)
[2025-11-27 00:54:32] 2025-11-27 05:53:44,732 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-27 00:54:32] 2025-11-27 05:53:44,743 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 3299.599520833332
[2025-11-27 00:54:32] 2025-11-27 05:53:44,755 | INFO     | using path: /tmp/boinchome/slots/9/PanDA_Pilot-6896990437/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 00:54:32] 2025-11-27 05:53:44,756 | INFO     | extracted standard info from prmon json
[2025-11-27 00:54:32] 2025-11-27 05:53:44,756 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 00:54:32] 2025-11-27 05:53:44,756 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 00:54:32] 2025-11-27 05:53:44,771 | INFO     | fitting pss+swap vs Time
[2025-11-27 00:54:32] 2025-11-27 05:53:44,772 | INFO     | sum of square deviations: 970963552697.3586
[2025-11-27 00:54:32] 2025-11-27 05:53:44,807 | INFO     | sum of deviations: 10302830535099.793
[2025-11-27 00:54:32] 2025-11-27 05:53:44,807 | INFO     | mean x: 1764178161.2228298
[2025-11-27 00:54:32] 2025-11-27 05:53:44,808 | INFO     | mean y: 2889670.6172248805
[2025-11-27 00:54:32] 2025-11-27 05:53:44,808 | INFO     | intersect: -18716689018.31436
[2025-11-27 00:54:32] 2025-11-27 05:53:44,809 | INFO     | chi2: 18.752334684266263
[2025-11-27 00:54:32] 2025-11-27 05:53:44,810 | INFO     | sum of square deviations: 961042693707.355
[2025-11-27 00:54:32] 2025-11-27 05:53:44,848 | INFO     | sum of deviations: 10757615153302.36
[2025-11-27 00:54:32] 2025-11-27 05:53:44,849 | INFO     | mean x: 1764178008.7270234
[2025-11-27 00:54:32] 2025-11-27 05:53:44,849 | INFO     | mean y: 2896660.204389575
[2025-11-27 00:54:32] 2025-11-27 05:53:44,849 | INFO     | intersect: -19744767209.53797
[2025-11-27 00:54:32] 2025-11-27 05:53:44,850 | INFO     | chi2: 15.948176887152044
[2025-11-27 00:54:32] 2025-11-27 05:53:44,850 | INFO     | current chi2=15.948176887152044 (change=14.953646275666069 %)
[2025-11-27 00:54:32] 2025-11-27 05:53:44,853 | INFO     | right removable region: 1457
[2025-11-27 00:54:32] 2025-11-27 05:53:44,854 | INFO     | sum of square deviations: 961041602417.3551
[2025-11-27 00:54:32] 2025-11-27 05:53:44,890 | INFO     | sum of deviations: 9749549701825.49
[2025-11-27 00:54:32] 2025-11-27 05:53:44,890 | INFO     | mean x: 1764178313.7270234
[2025-11-27 00:54:32] 2025-11-27 05:53:44,890 | INFO     | mean y: 2898173.0816186555
[2025-11-27 00:54:32] 2025-11-27 05:53:44,890 | INFO     | intersect: -17894291822.960625
[2025-11-27 00:54:32] 2025-11-27 05:53:44,891 | INFO     | chi2: 15.059948676072375
[2025-11-27 00:54:32] 2025-11-27 05:53:44,891 | INFO     | current chi2=15.059948676072375 (change=19.6902736131939 %)
[2025-11-27 00:54:32] 2025-11-27 05:53:44,891 | INFO     | left removable region: 10
[2025-11-27 00:54:32] 2025-11-27 05:53:44,893 | INFO     | sum of square deviations: 939453003493.1583
[2025-11-27 00:54:32] 2025-11-27 05:53:44,928 | INFO     | sum of deviations: 9675002402294.154
[2025-11-27 00:54:32] 2025-11-27 05:53:44,928 | INFO     | mean x: 1764178283.236351
[2025-11-27 00:54:32] 2025-11-27 05:53:44,928 | INFO     | mean y: 2914799.6924671736
[2025-11-27 00:54:32] 2025-11-27 05:53:44,928 | INFO     | intersect: -18165560967.505585
[2025-11-27 00:54:32] 2025-11-27 05:53:44,929 | INFO     | chi2: 8.135319478034887
[2025-11-27 00:54:32] 2025-11-27 05:53:44,929 | INFO     | current memory leak: 10.30 B/s (using 1447 data points, chi2=8.14)
[2025-11-27 00:54:32] 2025-11-27 05:53:44,930 | INFO     | could have reported an average CPU frequency of 3284 MHz (53 samples)
[2025-11-27 00:54:32] 2025-11-27 05:53:44,931 | INFO     | ..............................
[2025-11-27 00:54:32] 2025-11-27 05:53:44,931 | INFO     | . Timing measurements:
[2025-11-27 00:54:32] 2025-11-27 05:53:44,931 | INFO     | . get job = 0 s
[2025-11-27 00:54:32] 2025-11-27 05:53:44,931 | INFO     | . initial setup = 3 s
[2025-11-27 00:54:32] 2025-11-27 05:53:44,931 | INFO     | . payload setup = 21 s
[2025-11-27 00:54:32] 2025-11-27 05:53:44,931 | INFO     | . stage-in = 0 s
[2025-11-27 00:54:32] 2025-11-27 05:53:44,931 | INFO     | . payload execution = 89257 s
[2025-11-27 00:54:32] 2025-11-27 05:53:44,931 | INFO     | . stage-out = 3 s
[2025-11-27 00:54:32] 2025-11-27 05:53:44,931 | INFO     | . log creation = 1 s
[2025-11-27 00:54:32] 2025-11-27 05:53:44,931 | INFO     | ..............................
[2025-11-27 00:54:32] 2025-11-27 05:53:45,053 | INFO     | 
[2025-11-27 00:54:32] 2025-11-27 05:53:45,053 | INFO     | job summary report
[2025-11-27 00:54:32] 2025-11-27 05:53:45,053 | INFO     | --------------------------------------------------
[2025-11-27 00:54:32] 2025-11-27 05:53:45,053 | INFO     | PanDA job id: 6896990437
[2025-11-27 00:54:32] 2025-11-27 05:53:45,054 | INFO     | task id: 47556161
[2025-11-27 00:54:32] 2025-11-27 05:53:45,054 | INFO     | errors: (none)
[2025-11-27 00:54:32] 2025-11-27 05:53:45,054 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 00:54:32] 2025-11-27 05:53:45,054 | INFO     | pilot state: finished 
[2025-11-27 00:54:32] 2025-11-27 05:53:45,054 | INFO     | transexitcode: 0
[2025-11-27 00:54:32] 2025-11-27 05:53:45,054 | INFO     | exeerrorcode: 0
[2025-11-27 00:54:32] 2025-11-27 05:53:45,054 | INFO     | exeerrordiag: 
[2025-11-27 00:54:32] 2025-11-27 05:53:45,054 | INFO     | exitcode: 0
[2025-11-27 00:54:32] 2025-11-27 05:53:45,054 | INFO     | exitmsg: OK
[2025-11-27 00:54:32] 2025-11-27 05:53:45,054 | INFO     | cpuconsumptiontime: 197253 s
[2025-11-27 00:54:32] 2025-11-27 05:53:45,054 | INFO     | nevents: 1000
[2025-11-27 00:54:32] 2025-11-27 05:53:45,054 | INFO     | neventsw: 0
[2025-11-27 00:54:32] 2025-11-27 05:53:45,054 | INFO     | pid: 1305000
[2025-11-27 00:54:32] 2025-11-27 05:53:45,054 | INFO     | pgrp: 1305000
[2025-11-27 00:54:32] 2025-11-27 05:53:45,054 | INFO     | corecount: 9
[2025-11-27 00:54:32] 2025-11-27 05:53:45,054 | INFO     | event service: False
[2025-11-27 00:54:32] 2025-11-27 05:53:45,054 | INFO     | sizes: {0: 2284094, 1: 2284293, 12: 2284293, 13: 2284583, 23: 2284639, 89282: 2353408, 89283: 2353535, 89286: 2362585, 89288: 2362641, 89296: 2362983}
[2025-11-27 00:54:32] 2025-11-27 05:53:45,055 | INFO     | --------------------------------------------------
[2025-11-27 00:54:32] 2025-11-27 05:53:45,055 | INFO     | 
[2025-11-27 00:54:32] 2025-11-27 05:53:45,055 | INFO     | executing command: ls -lF /tmp/boinchome/slots/9
[2025-11-27 00:54:32] 2025-11-27 05:53:45,113 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 00:54:32] 2025-11-27 05:53:45,113 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 00:54:32] 2025-11-27 05:53:45,113 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 00:54:32] 2025-11-27 05:53:45,113 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 00:54:32] 2025-11-27 05:53:45,113 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 00:54:32] 2025-11-27 05:53:45,114 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 00:54:32] 2025-11-27 05:53:45,114 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 00:54:32] 2025-11-27 05:53:45,114 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 00:54:32] 2025-11-27 05:53:45,114 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 00:54:32] 2025-11-27 05:53:45,116 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 00:54:32] 2025-11-27 05:53:45,116 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 00:54:32] 2025-11-27 05:53:45,116 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 00:54:32] 2025-11-27 05:53:45,116 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 00:54:32] 2025-11-27 05:53:45,116 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 00:54:32] 2025-11-27 05:53:45,116 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 00:54:32] 2025-11-27 05:53:45,116 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 00:54:32] 2025-11-27 05:53:45,116 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 00:54:32] 2025-11-27 05:53:45,116 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 00:54:32] 2025-11-27 05:53:45,117 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 00:54:32] 2025-11-27 05:53:45,117 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 00:54:32] 2025-11-27 05:53:45,117 | INFO     | job 6896990437 has completed (purged errors)
[2025-11-27 00:54:32] 2025-11-27 05:53:45,117 | INFO     | overall cleanup function is called
[2025-11-27 00:54:32] 2025-11-27 05:53:46,140 | INFO     | --- collectZombieJob: --- 10, [1305000]
[2025-11-27 00:54:32] 2025-11-27 05:53:46,140 | INFO     | zombie collector waiting for pid 1305000
[2025-11-27 00:54:32] 2025-11-27 05:53:46,140 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 00:54:32] 2025-11-27 05:53:46,140 | INFO     | collected zombie processes
[2025-11-27 00:54:32] 2025-11-27 05:53:46,140 | INFO     | will attempt to kill all subprocesses of pid=1305000
[2025-11-27 00:54:32] 2025-11-27 05:53:46,634 | INFO     | process IDs to be killed: [1305000] (in reverse order)
[2025-11-27 00:54:32] 2025-11-27 05:53:46,814 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 00:54:32] 2025-11-27 05:53:46,814 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 00:54:32] 2025-11-27 05:53:46,842 | INFO     | did not find any defunct processes belonging to 1305000
[2025-11-27 00:54:32] 2025-11-27 05:53:46,865 | INFO     | did not find any defunct processes belonging to 1305000
[2025-11-27 00:54:32] 2025-11-27 05:53:46,866 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 00:54:32] 2025-11-27 05:53:46,867 | INFO     | ready for new job
[2025-11-27 00:54:32] 2025-11-27 05:53:46,867 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 00:54:32] 2025-11-27 05:53:46,872 | INFO     | ***************************************
[2025-11-27 00:54:32] 2025-11-27 05:53:46,872 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 00:54:32] 2025-11-27 05:53:46,872 | INFO     | ***************************************
[2025-11-27 00:54:32] 2025-11-27 05:53:46,873 | INFO     | 
[2025-11-27 00:54:32] 2025-11-27 05:53:46,877 | INFO     | architecture information:
[2025-11-27 00:54:32] 2025-11-27 05:53:46,878 | INFO     | executing command: cat /etc/os-release
[2025-11-27 00:54:32] 2025-11-27 05:53:46,896 | INFO     | cat /etc/os-release:
[2025-11-27 00:54:32] NAME="CentOS Linux"
[2025-11-27 00:54:32] VERSION="7 (Core)"
[2025-11-27 00:54:32] ID="centos"
[2025-11-27 00:54:32] ID_LIKE="rhel fedora"
[2025-11-27 00:54:32] VERSION_ID="7"
[2025-11-27 00:54:32] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 00:54:32] ANSI_COLOR="0;31"
[2025-11-27 00:54:32] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 00:54:32] HOME_URL="https://www.centos.org/"
[2025-11-27 00:54:32] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 00:54:32] 
[2025-11-27 00:54:32] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 00:54:32] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 00:54:32] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 00:54:32] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 00:54:32] 
[2025-11-27 00:54:32] 2025-11-27 05:53:46,896 | INFO     | ***************************************
[2025-11-27 00:54:32] 2025-11-27 05:53:47,400 | INFO     | executing command: df -mP /tmp/boinchome/slots/9
[2025-11-27 00:54:32] 2025-11-27 05:53:47,421 | INFO     | sufficient remaining disk space (119584849920 B)
[2025-11-27 00:54:32] 2025-11-27 05:53:47,421 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 00:54:32] 2025-11-27 05:53:47,422 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 00:54:32] 2025-11-27 05:53:47,422 | INFO     | update_server=False
[2025-11-27 00:54:32] 2025-11-27 05:53:47,422 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 00:54:32] 2025-11-27 05:53:47,422 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 00:54:32] 2025-11-27 05:53:47,422 | INFO     | aborting loop
[2025-11-27 00:54:32] 2025-11-27 05:53:47,423 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 00:54:32] 2025-11-27 05:53:47,450 | INFO     | all job control threads have been joined
[2025-11-27 00:54:32] 2025-11-27 05:53:48,285 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 00:54:32] 2025-11-27 05:53:48,353 | INFO     | all data control threads have been joined
[2025-11-27 00:54:32] 2025-11-27 05:53:48,385 | INFO     | all payload control threads have been joined
[2025-11-27 00:54:32] 2025-11-27 05:53:48,428 | INFO     | [job] retrieve thread has finished
[2025-11-27 00:54:32] 2025-11-27 05:53:48,432 | INFO     | [job] job monitor thread has finished
[2025-11-27 00:54:32] 2025-11-27 05:53:48,456 | INFO     | [job] control thread has finished
[2025-11-27 00:54:32] 2025-11-27 05:53:48,460 | INFO     | [data] copytool_in thread has finished
[2025-11-27 00:54:32] 2025-11-27 05:53:48,732 | INFO     | [payload] validate_post thread has finished
[2025-11-27 00:54:32] 2025-11-27 05:53:48,982 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 00:54:32] 2025-11-27 05:53:49,050 | INFO     | [job] validate thread has finished
[2025-11-27 00:54:32] 2025-11-27 05:53:49,149 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 00:54:32] 2025-11-27 05:53:49,286 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 00:54:32] 2025-11-27 05:53:49,358 | INFO     | [data] control thread has finished
[2025-11-27 00:54:32] 2025-11-27 05:53:49,390 | INFO     | [payload] control thread has finished
[2025-11-27 00:54:32] 2025-11-27 05:53:49,516 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 00:54:32] 2025-11-27 05:53:49,989 | INFO     | [payload] failed_post thread has finished
[2025-11-27 00:54:32] 2025-11-27 05:53:50,030 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 00:54:32] 2025-11-27 05:53:50,290 | INFO     | [data] copytool_out thread has finished
[2025-11-27 00:54:32] 2025-11-27 05:53:51,036 | INFO     | [job] queue monitor thread has finished
[2025-11-27 00:54:32] 2025-11-27 05:53:51,430 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 00:54:32] 2025-11-27 05:54:17,590 | INFO     | PID=1267537 has CPU usage=4.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 00:54:32] 2025-11-27 05:54:17,591 | INFO     | .. there are 49 such processes running
[2025-11-27 00:54:32] 2025-11-27 05:54:17,591 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 00:54:32] 2025-11-27 05:54:17,591 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 00:54:32] 2025-11-27 05:54:17,591 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 00:54:32] 2025-11-27 05:54:25,347 | INFO     | [monitor] cgroup control has ended
[2025-11-27 00:54:32] 2025-11-27 05:54:26,593 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140477839873856)>', '<ExcThread(monitor, started 140476871063296)>']
[2025-11-27 00:54:32] 2025-11-27 05:54:26,642 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 00:54:32] 2025-11-27 05:54:26,642 | INFO     | [monitor] control thread has ended
[2025-11-27 00:54:32] 2025-11-27 05:54:31,618 | INFO     | all workflow threads have been joined
[2025-11-27 00:54:32] 2025-11-27 05:54:31,618 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 00:54:32] 2025-11-27 05:54:31,618 | INFO     | traces error code: 0
[2025-11-27 00:54:32] 2025-11-27 05:54:31,619 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 00:54:32] 2025-11-27 05:54:31,763 [wrapper] ==== pilot stdout END ====
[2025-11-27 00:54:32] 2025-11-27 05:54:31,765 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 00:54:32] 2025-11-27 05:54:31,768 [wrapper] pilotpid: 1267537
[2025-11-27 00:54:32] 2025-11-27 05:54:31,776 [wrapper] Pilot exit status: 0
[2025-11-27 00:54:32] 2025-11-27 05:54:31,802 [wrapper] pandaids: 6896990437
[2025-11-27 00:54:32] 2025-11-27 05:54:31,929 [wrapper] cleanup supervisor_pilot 1804729 1267538
[2025-11-27 00:54:32] 2025-11-27 05:54:31,932 [wrapper] Test setup, not cleaning
[2025-11-27 00:54:32] 2025-11-27 05:54:31,935 [wrapper] apfmon messages muted
[2025-11-27 00:54:32] 2025-11-27 05:54:31,938 [wrapper] ==== wrapper stdout END ====
[2025-11-27 00:54:32] 2025-11-27 05:54:31,941 [wrapper] ==== wrapper stderr END ====
[2025-11-27 00:54:32]  *** Error codes and diagnostics ***
[2025-11-27 00:54:32]     "exeErrorCode": 0,
[2025-11-27 00:54:32]     "exeErrorDiag": "",
[2025-11-27 00:54:32]     "pilotErrorCode": 0,
[2025-11-27 00:54:32]     "pilotErrorDiag": "",
[2025-11-27 00:54:32]  *** Listing of results directory ***
[2025-11-27 00:54:32] total 1323432
[2025-11-27 00:54:32] -rw-r--r--. 1 boincer umatlas    576529 Nov 25 11:48 pilot3.tar.gz
[2025-11-27 00:54:32] -rw-r--r--. 1 boincer umatlas      5112 Nov 25 11:55 queuedata.json
[2025-11-27 00:54:32] -rwx------. 1 boincer umatlas     36292 Nov 25 11:56 runpilot2-wrapper.sh
[2025-11-27 00:54:32] -rw-r--r--. 1 boincer umatlas       100 Nov 26 00:04 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 00:54:32] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 26 00:04 run_atlas
[2025-11-27 00:54:32] -rw-r--r--. 1 boincer umatlas       105 Nov 26 00:04 job.xml
[2025-11-27 00:54:32] -rw-r--r--. 2 boincer umatlas 410999326 Nov 26 00:04 EVNT.47483658._002175.pool.root.1
[2025-11-27 00:54:32] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 00:04 start_atlas.sh
[2025-11-27 00:54:32] drwxrwx--x. 2 boincer umatlas      4096 Nov 26 00:04 shared
[2025-11-27 00:54:32] -rw-r--r--. 2 boincer umatlas    590106 Nov 26 00:04 input.tar.gz
[2025-11-27 00:54:32] -rw-r--r--. 1 boincer umatlas         0 Nov 26 00:04 boinc_lockfile
[2025-11-27 00:54:32] -rw-r--r--. 1 boincer umatlas      2786 Nov 26 00:04 pandaJob.out
[2025-11-27 00:54:32] -rw-------. 1 boincer umatlas        57 Nov 26 00:04 setup.sh.local
[2025-11-27 00:54:32] -rw-------. 1 boincer umatlas    991877 Nov 26 00:04 agis_schedconf.cvmfs.json
[2025-11-27 00:54:32] drwx------. 5 boincer umatlas      4096 Nov 26 00:04 pilot3
[2025-11-27 00:54:32] -rw-r--r--. 1 boincer umatlas       533 Nov 27 00:43 boinc_task_state.xml
[2025-11-27 00:54:32] -rw-------. 1 boincer umatlas 910979092 Nov 27 00:53 HITS.47556161._001582.pool.root.1
[2025-11-27 00:54:32] -rw-------. 1 boincer umatlas      1070 Nov 27 00:53 memory_monitor_summary.json
[2025-11-27 00:54:32] -rw-------. 1 boincer umatlas   1516240 Nov 27 00:53 agis_ddmendpoints.agis.ALL.json
[2025-11-27 00:54:32] -rw-------. 1 boincer umatlas        95 Nov 27 00:53 pilot_heartbeat.json
[2025-11-27 00:54:32] -rw-------. 1 boincer umatlas   2638367 Nov 27 00:53 log.47556161._001582.job.log.tgz.1
[2025-11-27 00:54:32] -rw-------. 1 boincer umatlas      8624 Nov 27 00:53 heartbeat.json
[2025-11-27 00:54:32] -rw-r--r--. 1 boincer umatlas      6949 Nov 27 00:54 init_data.xml
[2025-11-27 00:54:32] -rw-r--r--. 1 boincer umatlas      8192 Nov 27 00:54 boinc_mmap_file
[2025-11-27 00:54:32] -rw-r--r--. 1 boincer umatlas        29 Nov 27 00:54 wrapper_checkpoint.txt
[2025-11-27 00:54:32] -rw-------. 1 boincer umatlas      4825 Nov 27 00:54 pilotlog.txt
[2025-11-27 00:54:32] -rw-------. 1 boincer umatlas  12009192 Nov 27 00:54 log.47556161._001582.job.log.1
[2025-11-27 00:54:32] -rw-------. 1 boincer umatlas       353 Nov 27 00:54 output.list
[2025-11-27 00:54:32] -rw-r--r--. 1 boincer umatlas       620 Nov 27 00:54 runtime_log
[2025-11-27 00:54:32] -rw-------. 1 boincer umatlas  14663680 Nov 27 00:54 result.tar.gz
[2025-11-27 00:54:32] -rw-r--r--. 1 boincer umatlas      9343 Nov 27 00:54 runtime_log.err
[2025-11-27 00:54:32] -rw-------. 1 boincer umatlas       665 Nov 27 00:54 chqKDmTWBi8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmMTMKDmglJeRo.diag
[2025-11-27 00:54:32] -rw-r--r--. 1 boincer umatlas     21836 Nov 27 00:54 stderr.txt
[2025-11-27 00:54:32] HITS file was successfully produced:
[2025-11-27 00:54:32] -rw-------. 1 boincer umatlas 910979092 Nov 27 00:53 shared/HITS.pool.root.1
[2025-11-27 00:54:32]  *** Contents of shared directory: ***
[2025-11-27 00:54:32] total 1305924
[2025-11-27 00:54:32] -rw-r--r--. 2 boincer umatlas 410999326 Nov 26 00:04 ATLAS.root_0
[2025-11-27 00:54:32] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 00:04 start_atlas.sh
[2025-11-27 00:54:32] -rw-r--r--. 2 boincer umatlas    590106 Nov 26 00:04 input.tar.gz
[2025-11-27 00:54:32] -rw-------. 1 boincer umatlas 910979092 Nov 27 00:53 HITS.pool.root.1
[2025-11-27 00:54:32] -rw-------. 1 boincer umatlas  14663680 Nov 27 00:54 result.tar.gz
00:54:33 (1247467): run_atlas exited; CPU time 199677.188708
00:54:33 (1247467): called boinc_finish(0)

</stderr_txt>
]]>

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