Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
21:49:46 (394271): wrapper (7.7.26015): starting
21:49:46 (394271): wrapper: running run_atlas (--nthreads 8)
[2025-11-25 21:49:46] Arguments: --nthreads 8
[2025-11-25 21:49:46] Threads: 8
[2025-11-25 21:49:46] Checking for CVMFS
[2025-11-25 21:49:46] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 21:49:47] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 21:49:47] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 21:49:47] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 21:49:47] 2.13.3.0 12348 29472 385632 153305 0 373 29343824 32935936 32072 16776704 0 146390489 99.488 188144504 35494 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-25 21:49:47] CVMFS is ok
[2025-11-25 21:49:47] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 21:49:47] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 21:49:47] Further information can be found at the LHC@home message board.
[2025-11-25 21:49:47] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 21:49:47] Checking for apptainer binary...
[2025-11-25 21:49:47] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 21:49:47] Running /usr/bin/apptainer --version
[2025-11-25 21:49:47] apptainer version 1.4.4-1.el9
[2025-11-25 21:49:47] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 21:49:47] c6-12-27-2.aglt2.org
[2025-11-25 21:49:47] apptainer works
[2025-11-25 21:49:48] Set ATHENA_PROC_NUMBER=8
[2025-11-25 21:49:48] Set ATHENA_CORE_NUMBER=8
[2025-11-25 21:49:48] Starting ATLAS job with PandaID=6896990431
[2025-11-25 21:49:48] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 22:26:28]  *** The last 200 lines of the pilot log: ***
[2025-11-26 22:26:28] 2025-11-27 03:25:04,322 | INFO     | monitor loop #4403: job 0:6896990431 is in state 'finished'
[2025-11-26 22:26:28] 2025-11-27 03:25:04,322 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 22:26:28] 2025-11-27 03:25:06,919 | INFO     | monitor loop #4404: job 0:6896990431 is in state 'finished'
[2025-11-26 22:26:28] 2025-11-27 03:25:06,919 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 22:26:28] 2025-11-27 03:25:09,240 | INFO     | PID=405550 has CPU usage=11.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-26 22:26:28] 2025-11-27 03:25:09,240 | INFO     | .. there are 48 such processes running
[2025-11-26 22:26:28] 2025-11-27 03:25:09,441 | INFO     | monitor loop #4405: job 0:6896990431 is in state 'finished'
[2025-11-26 22:26:28] 2025-11-27 03:25:09,441 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 22:26:28] 2025-11-27 03:25:09,472 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-26 22:26:28] 2025-11-27 03:25:09,932 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2664.513947916668
[2025-11-26 22:26:28] 2025-11-27 03:25:10,205 | INFO     | using path: /tmp/boinchome/slots/5/PanDA_Pilot-6896990431/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 22:26:28] 2025-11-27 03:25:10,206 | INFO     | extracted standard info from prmon json
[2025-11-26 22:26:28] 2025-11-27 03:25:10,225 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 22:26:28] 2025-11-27 03:25:10,225 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 22:26:28] 2025-11-27 03:25:10,272 | INFO     | time since job start (88481s) is within the limit (172800.0s)
[2025-11-26 22:26:28] 2025-11-27 03:25:10,556 | INFO     | fitting pss+swap vs Time
[2025-11-26 22:26:28] 2025-11-27 03:25:10,593 | INFO     | sum of square deviations: 943369518708.9135
[2025-11-26 22:26:28] 2025-11-27 03:25:10,996 | INFO     | sum of deviations: 3898633514060.0254
[2025-11-26 22:26:28] 2025-11-27 03:25:10,997 | INFO     | mean x: 1764169685.9620428
[2025-11-26 22:26:28] 2025-11-27 03:25:10,997 | INFO     | mean y: 2923554.800552105
[2025-11-26 22:26:28] 2025-11-27 03:25:10,997 | INFO     | intersect: -7287804972.864123
[2025-11-26 22:26:28] 2025-11-27 03:25:11,041 | INFO     | chi2: 12.632759184388263
[2025-11-26 22:26:28] 2025-11-27 03:25:11,052 | INFO     | sum of square deviations: 933638719669.8936
[2025-11-26 22:26:28] 2025-11-27 03:25:11,334 | INFO     | sum of deviations: 4388519437560.993
[2025-11-26 22:26:28] 2025-11-27 03:25:11,335 | INFO     | mean x: 1764169533.472299
[2025-11-26 22:26:28] 2025-11-27 03:25:11,335 | INFO     | mean y: 2931230.3372576176
[2025-11-26 22:26:28] 2025-11-27 03:25:11,335 | INFO     | intersect: -8289454384.875299
[2025-11-26 22:26:28] 2025-11-27 03:25:11,349 | INFO     | chi2: 9.499453733832759
[2025-11-26 22:26:28] 2025-11-27 03:25:11,350 | INFO     | current chi2=9.499453733832759 (change=24.803017336289336 %)
[2025-11-26 22:26:28] 2025-11-27 03:25:11,350 | INFO     | right removable region: 1443
[2025-11-26 22:26:28] 2025-11-27 03:25:11,364 | INFO     | sum of square deviations: 933636101549.891
[2025-11-26 22:26:28] 2025-11-27 03:25:11,548 | INFO     | sum of deviations: 3345906533551.392
[2025-11-26 22:26:28] 2025-11-27 03:25:11,549 | INFO     | mean x: 1764169838.472299
[2025-11-26 22:26:28] 2025-11-27 03:25:11,549 | INFO     | mean y: 2932213.959833795
[2025-11-26 22:26:28] 2025-11-27 03:25:11,549 | INFO     | intersect: -6319389062.006103
[2025-11-26 22:26:28] 2025-11-27 03:25:11,563 | INFO     | chi2: 9.042583771410982
[2025-11-26 22:26:28] 2025-11-27 03:25:11,564 | INFO     | current chi2=9.042583771410982 (change=28.419566624954502 %)
[2025-11-26 22:26:28] 2025-11-27 03:25:11,566 | INFO     | sum of square deviations: 923970024496.4932
[2025-11-26 22:26:28] 2025-11-27 03:25:11,755 | INFO     | sum of deviations: 3118047782655.389
[2025-11-26 22:26:28] 2025-11-27 03:25:11,755 | INFO     | mean x: 1764169990.981237
[2025-11-26 22:26:28] 2025-11-27 03:25:11,756 | INFO     | mean y: 2935805.82904795
[2025-11-26 22:26:28] 2025-11-27 03:25:11,768 | INFO     | intersect: -5950467641.002253
[2025-11-26 22:26:28] 2025-11-27 03:25:11,770 | INFO     | chi2: 8.39315599682841
[2025-11-26 22:26:28] 2025-11-27 03:25:11,771 | INFO     | current chi2=8.39315599682841 (change=7.181882866662528 %)
[2025-11-26 22:26:28] 2025-11-27 03:25:11,771 | INFO     | left removable region: 20
[2025-11-26 22:26:28] 2025-11-27 03:25:11,782 | INFO     | sum of square deviations: 893490490258.8821
[2025-11-26 22:26:28] 2025-11-27 03:25:11,965 | INFO     | sum of deviations: 3507761604311.002
[2025-11-26 22:26:28] 2025-11-27 03:25:11,965 | INFO     | mean x: 1764170113.0091357
[2025-11-26 22:26:28] 2025-11-27 03:25:11,965 | INFO     | mean y: 2948048.230498946
[2025-11-26 22:26:28] 2025-11-27 03:25:11,965 | INFO     | intersect: -6923021789.560878
[2025-11-26 22:26:28] 2025-11-27 03:25:11,981 | INFO     | chi2: 4.622932472950451
[2025-11-26 22:26:28] 2025-11-27 03:25:11,981 | INFO     | current memory leak: 3.93 B/s (using 1423 data points, chi2=4.62)
[2025-11-26 22:26:28] 2025-11-27 03:25:11,983 | INFO     | could have reported an average CPU frequency of 2713 MHz (51 samples)
[2025-11-26 22:26:28] 2025-11-27 03:25:11,984 | INFO     | ..............................
[2025-11-26 22:26:28] 2025-11-27 03:25:11,984 | INFO     | . Timing measurements:
[2025-11-26 22:26:28] 2025-11-27 03:25:11,989 | INFO     | . get job = 0 s
[2025-11-26 22:26:28] 2025-11-27 03:25:11,989 | INFO     | . initial setup = 3 s
[2025-11-26 22:26:28] 2025-11-27 03:25:11,989 | INFO     | . payload setup = 28 s
[2025-11-26 22:26:28] 2025-11-27 03:25:11,989 | INFO     | . stage-in = 0 s
[2025-11-26 22:26:28] 2025-11-27 03:25:11,990 | INFO     | . payload execution = 88361 s
[2025-11-26 22:26:28] 2025-11-27 03:25:11,990 | INFO     | . stage-out = 9 s
[2025-11-26 22:26:28] 2025-11-27 03:25:11,990 | INFO     | . log creation = 1 s
[2025-11-26 22:26:28] 2025-11-27 03:25:11,990 | INFO     | ..............................
[2025-11-26 22:26:28] 2025-11-27 03:25:12,321 | INFO     | time since job start (88483s) is within the limit (172800.0s)
[2025-11-26 22:26:28] 2025-11-27 03:25:13,443 | INFO     | 
[2025-11-26 22:26:28] 2025-11-27 03:25:13,454 | INFO     | job summary report
[2025-11-26 22:26:28] 2025-11-27 03:25:13,454 | INFO     | --------------------------------------------------
[2025-11-26 22:26:28] 2025-11-27 03:25:13,454 | INFO     | PanDA job id: 6896990431
[2025-11-26 22:26:28] 2025-11-27 03:25:13,454 | INFO     | task id: 47556161
[2025-11-26 22:26:28] 2025-11-27 03:25:13,454 | INFO     | errors: (none)
[2025-11-26 22:26:28] 2025-11-27 03:25:13,454 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 22:26:28] 2025-11-27 03:25:13,455 | INFO     | pilot state: finished 
[2025-11-26 22:26:28] 2025-11-27 03:25:13,455 | INFO     | transexitcode: 0
[2025-11-26 22:26:28] 2025-11-27 03:25:13,455 | INFO     | exeerrorcode: 0
[2025-11-26 22:26:28] 2025-11-27 03:25:13,455 | INFO     | exeerrordiag: 
[2025-11-26 22:26:28] 2025-11-27 03:25:13,455 | INFO     | exitcode: 0
[2025-11-26 22:26:28] 2025-11-27 03:25:13,455 | INFO     | exitmsg: OK
[2025-11-26 22:26:28] 2025-11-27 03:25:13,455 | INFO     | cpuconsumptiontime: 263204 s
[2025-11-26 22:26:28] 2025-11-27 03:25:13,455 | INFO     | nevents: 1000
[2025-11-26 22:26:28] 2025-11-27 03:25:13,455 | INFO     | neventsw: 0
[2025-11-26 22:26:28] 2025-11-27 03:25:13,455 | INFO     | pid: 421027
[2025-11-26 22:26:28] 2025-11-27 03:25:13,455 | INFO     | pgrp: 421027
[2025-11-26 22:26:28] 2025-11-27 03:25:13,455 | INFO     | corecount: 8
[2025-11-26 22:26:28] 2025-11-27 03:25:13,455 | INFO     | event service: False
[2025-11-26 22:26:28] 2025-11-27 03:25:13,456 | INFO     | sizes: {0: 2284094, 1: 2284094, 2: 2284321, 13: 2284321, 19: 2284639, 24: 2284667, 88397: 2348819, 88398: 2348846, 88410: 2357896, 88411: 2357952, 88442: 2358198}
[2025-11-26 22:26:28] 2025-11-27 03:25:13,582 | INFO     | --------------------------------------------------
[2025-11-26 22:26:28] 2025-11-27 03:25:13,582 | INFO     | 
[2025-11-26 22:26:28] 2025-11-27 03:25:13,582 | INFO     | executing command: ls -lF /tmp/boinchome/slots/5
[2025-11-26 22:26:28] 2025-11-27 03:25:13,681 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 22:26:28] 2025-11-27 03:25:13,682 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 22:26:28] 2025-11-27 03:25:13,682 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 22:26:28] 2025-11-27 03:25:13,682 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 22:26:28] 2025-11-27 03:25:13,682 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 22:26:28] 2025-11-27 03:25:13,682 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 22:26:28] 2025-11-27 03:25:13,682 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 22:26:28] 2025-11-27 03:25:13,683 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 22:26:28] 2025-11-27 03:25:13,683 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 22:26:28] 2025-11-27 03:25:13,683 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 22:26:28] 2025-11-27 03:25:13,683 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 22:26:28] 2025-11-27 03:25:13,683 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 22:26:28] 2025-11-27 03:25:13,683 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 22:26:28] 2025-11-27 03:25:13,683 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 22:26:28] 2025-11-27 03:25:13,683 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 22:26:28] 2025-11-27 03:25:13,683 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 22:26:28] 2025-11-27 03:25:13,683 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 22:26:28] 2025-11-27 03:25:13,683 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 22:26:28] 2025-11-27 03:25:13,683 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 22:26:28] 2025-11-27 03:25:13,683 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 22:26:28] 2025-11-27 03:25:13,684 | INFO     | job 6896990431 has completed (purged errors)
[2025-11-26 22:26:28] 2025-11-27 03:25:13,684 | INFO     | overall cleanup function is called
[2025-11-26 22:26:28] 2025-11-27 03:25:14,783 | INFO     | --- collectZombieJob: --- 10, [421027]
[2025-11-26 22:26:28] 2025-11-27 03:25:14,804 | INFO     | zombie collector waiting for pid 421027
[2025-11-26 22:26:28] 2025-11-27 03:25:14,804 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 22:26:28] 2025-11-27 03:25:14,804 | INFO     | collected zombie processes
[2025-11-26 22:26:28] 2025-11-27 03:25:14,805 | INFO     | will attempt to kill all subprocesses of pid=421027
[2025-11-26 22:26:28] 2025-11-27 03:25:20,049 | INFO     | process IDs to be killed: [421027] (in reverse order)
[2025-11-26 22:26:28] 2025-11-27 03:25:20,643 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 22:26:28] 2025-11-27 03:25:20,643 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 22:26:28] 2025-11-27 03:25:20,705 | INFO     | did not find any defunct processes belonging to 421027
[2025-11-26 22:26:28] 2025-11-27 03:25:20,761 | INFO     | did not find any defunct processes belonging to 421027
[2025-11-26 22:26:28] 2025-11-27 03:25:20,769 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 22:26:28] 2025-11-27 03:25:20,769 | INFO     | ready for new job
[2025-11-26 22:26:28] 2025-11-27 03:25:20,770 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 22:26:28] 2025-11-27 03:25:20,784 | INFO     | ***************************************
[2025-11-26 22:26:28] 2025-11-27 03:25:20,787 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 22:26:28] 2025-11-27 03:25:20,787 | INFO     | ***************************************
[2025-11-26 22:26:28] 2025-11-27 03:25:20,787 | INFO     | 
[2025-11-26 22:26:28] 2025-11-27 03:25:20,798 | INFO     | architecture information:
[2025-11-26 22:26:28] 2025-11-27 03:25:20,806 | INFO     | executing command: cat /etc/os-release
[2025-11-26 22:26:28] 2025-11-27 03:25:20,988 | INFO     | cat /etc/os-release:
[2025-11-26 22:26:28] NAME="CentOS Linux"
[2025-11-26 22:26:28] VERSION="7 (Core)"
[2025-11-26 22:26:28] ID="centos"
[2025-11-26 22:26:28] ID_LIKE="rhel fedora"
[2025-11-26 22:26:28] VERSION_ID="7"
[2025-11-26 22:26:28] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 22:26:28] ANSI_COLOR="0;31"
[2025-11-26 22:26:28] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 22:26:28] HOME_URL="https://www.centos.org/"
[2025-11-26 22:26:28] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 22:26:28] 
[2025-11-26 22:26:28] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 22:26:28] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 22:26:28] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 22:26:28] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 22:26:28] 
[2025-11-26 22:26:28] 2025-11-27 03:25:20,992 | INFO     | ***************************************
[2025-11-26 22:26:28] 2025-11-27 03:25:21,496 | INFO     | executing command: df -mP /tmp/boinchome/slots/5
[2025-11-26 22:26:28] 2025-11-27 03:25:21,534 | INFO     | sufficient remaining disk space (84371570688 B)
[2025-11-26 22:26:28] 2025-11-27 03:25:21,535 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 22:26:28] 2025-11-27 03:25:21,535 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 22:26:28] 2025-11-27 03:25:21,535 | INFO     | update_server=False
[2025-11-26 22:26:28] 2025-11-27 03:25:21,535 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 22:26:28] 2025-11-27 03:25:21,535 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 22:26:28] 2025-11-27 03:25:21,535 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 22:26:28] 2025-11-27 03:25:21,538 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 22:26:28] 2025-11-27 03:25:21,538 | INFO     | aborting loop
[2025-11-26 22:26:28] 2025-11-27 03:25:21,612 | INFO     | all data control threads have been joined
[2025-11-26 22:26:28] 2025-11-27 03:25:21,802 | INFO     | all payload control threads have been joined
[2025-11-26 22:26:28] 2025-11-27 03:25:22,194 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 22:26:28] 2025-11-27 03:25:22,429 | INFO     | all job control threads have been joined
[2025-11-26 22:26:28] 2025-11-27 03:25:22,542 | INFO     | [job] retrieve thread has finished
[2025-11-26 22:26:28] 2025-11-27 03:25:22,550 | INFO     | [job] job monitor thread has finished
[2025-11-26 22:26:28] 2025-11-27 03:25:22,617 | INFO     | [data] control thread has finished
[2025-11-26 22:26:28] 2025-11-27 03:25:22,808 | INFO     | [payload] control thread has finished
[2025-11-26 22:26:28] 2025-11-27 03:25:23,135 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 22:26:28] 2025-11-27 03:25:23,200 | INFO     | [job] queue monitor thread has finished
[2025-11-26 22:26:28] 2025-11-27 03:25:23,225 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 22:26:28] 2025-11-27 03:25:23,226 | INFO     | [job] validate thread has finished
[2025-11-26 22:26:28] 2025-11-27 03:25:23,270 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 22:26:28] 2025-11-27 03:25:23,345 | INFO     | [payload] failed_post thread has finished
[2025-11-26 22:26:28] 2025-11-27 03:25:23,435 | INFO     | [job] control thread has finished
[2025-11-26 22:26:28] 2025-11-27 03:25:23,508 | INFO     | [payload] validate_post thread has finished
[2025-11-26 22:26:28] 2025-11-27 03:25:23,544 | INFO     | [data] copytool_out thread has finished
[2025-11-26 22:26:28] 2025-11-27 03:25:23,654 | INFO     | [data] copytool_in thread has finished
[2025-11-26 22:26:28] 2025-11-27 03:25:23,723 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 22:26:28] 2025-11-27 03:25:25,565 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 22:26:28] 2025-11-27 03:25:51,291 | INFO     | PID=405550 has CPU usage=5.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-26 22:26:28] 2025-11-27 03:25:51,294 | INFO     | .. there are 48 such processes running
[2025-11-26 22:26:28] 2025-11-27 03:25:51,330 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 22:26:28] 2025-11-27 03:25:51,330 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 22:26:28] 2025-11-27 03:25:51,331 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 22:26:28] 2025-11-27 03:26:18,707 | INFO     | [monitor] cgroup control has ended
[2025-11-26 22:26:28] 2025-11-27 03:26:20,753 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140402834761536)>', '<ExcThread(monitor, started 140402212468480)>']
[2025-11-26 22:26:28] 2025-11-27 03:26:21,609 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 22:26:28] 2025-11-27 03:26:21,609 | INFO     | [monitor] control thread has ended
[2025-11-26 22:26:28] 2025-11-27 03:26:25,779 | INFO     | all workflow threads have been joined
[2025-11-26 22:26:28] 2025-11-27 03:26:25,779 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 22:26:28] 2025-11-27 03:26:25,780 | INFO     | traces error code: 0
[2025-11-26 22:26:28] 2025-11-27 03:26:25,780 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 22:26:28] 2025-11-27 03:26:27,744 [wrapper] ==== pilot stdout END ====
[2025-11-26 22:26:28] 2025-11-27 03:26:27,770 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 22:26:28] 2025-11-27 03:26:27,786 [wrapper] pilotpid: 405550
[2025-11-26 22:26:28] 2025-11-27 03:26:27,812 [wrapper] Pilot exit status: 0
[2025-11-26 22:26:28] 2025-11-27 03:26:27,902 [wrapper] pandaids: 6896990431
[2025-11-26 22:26:28] 2025-11-27 03:26:28,142 [wrapper] cleanup supervisor_pilot 2737712 405551
[2025-11-26 22:26:28] 2025-11-27 03:26:28,158 [wrapper] Test setup, not cleaning
[2025-11-26 22:26:28] 2025-11-27 03:26:28,183 [wrapper] apfmon messages muted
[2025-11-26 22:26:28] 2025-11-27 03:26:28,203 [wrapper] ==== wrapper stdout END ====
[2025-11-26 22:26:28] 2025-11-27 03:26:28,236 [wrapper] ==== wrapper stderr END ====
[2025-11-26 22:26:28]  *** Error codes and diagnostics ***
[2025-11-26 22:26:28]     "exeErrorCode": 0,
[2025-11-26 22:26:28]     "exeErrorDiag": "",
[2025-11-26 22:26:28]     "pilotErrorCode": 0,
[2025-11-26 22:26:28]     "pilotErrorDiag": "",
[2025-11-26 22:26:28]  *** Listing of results directory ***
[2025-11-26 22:26:28] total 1328820
[2025-11-26 22:26:28] -rw-r--r--. 1 boincer umatlas    576529 Nov 25 11:48 pilot3.tar.gz
[2025-11-26 22:26:28] -rw-r--r--. 1 boincer umatlas      5112 Nov 25 11:55 queuedata.json
[2025-11-26 22:26:28] -rwx------. 1 boincer umatlas     36292 Nov 25 11:56 runpilot2-wrapper.sh
[2025-11-26 22:26:28] -rw-r--r--. 1 boincer umatlas       100 Nov 25 21:49 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 22:26:28] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 25 21:49 run_atlas
[2025-11-26 22:26:28] -rw-r--r--. 1 boincer umatlas       105 Nov 25 21:49 job.xml
[2025-11-26 22:26:28] -rw-r--r--. 2 boincer umatlas 409873130 Nov 25 21:49 EVNT.47483658._002174.pool.root.1
[2025-11-26 22:26:28] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 21:49 start_atlas.sh
[2025-11-26 22:26:28] drwxrwx--x. 2 boincer umatlas      4096 Nov 25 21:49 shared
[2025-11-26 22:26:28] -rw-r--r--. 2 boincer umatlas    590109 Nov 25 21:49 input.tar.gz
[2025-11-26 22:26:28] -rw-r--r--. 1 boincer umatlas         0 Nov 25 21:49 boinc_lockfile
[2025-11-26 22:26:28] -rw-r--r--. 1 boincer umatlas      2786 Nov 25 21:49 pandaJob.out
[2025-11-26 22:26:28] -rw-------. 1 boincer umatlas        57 Nov 25 21:49 setup.sh.local
[2025-11-26 22:26:28] -rw-------. 1 boincer umatlas    991877 Nov 25 21:50 agis_schedconf.cvmfs.json
[2025-11-26 22:26:28] drwx------. 5 boincer umatlas      4096 Nov 25 21:50 pilot3
[2025-11-26 22:26:28] -rw-r--r--. 1 boincer umatlas       533 Nov 26 22:01 boinc_task_state.xml
[2025-11-26 22:26:28] -rw-r--r--. 1 boincer umatlas      6880 Nov 26 22:20 init_data.xml
[2025-11-26 22:26:28] -rw-------. 1 boincer umatlas 922274215 Nov 26 22:23 HITS.47556161._001576.pool.root.1
[2025-11-26 22:26:28] -rw-------. 1 boincer umatlas      1059 Nov 26 22:24 memory_monitor_summary.json
[2025-11-26 22:26:28] -rw-------. 1 boincer umatlas   1516240 Nov 26 22:24 agis_ddmendpoints.agis.ALL.json
[2025-11-26 22:26:28] -rw-------. 1 boincer umatlas   2391407 Nov 26 22:24 log.47556161._001576.job.log.tgz.1
[2025-11-26 22:26:28] -rw-------. 1 boincer umatlas      8625 Nov 26 22:25 heartbeat.json
[2025-11-26 22:26:28] -rw-------. 1 boincer umatlas        95 Nov 26 22:25 pilot_heartbeat.json
[2025-11-26 22:26:28] -rw-r--r--. 1 boincer umatlas        29 Nov 26 22:26 wrapper_checkpoint.txt
[2025-11-26 22:26:28] -rw-------. 1 boincer umatlas      4823 Nov 26 22:26 pilotlog.txt
[2025-11-26 22:26:28] -rw-------. 1 boincer umatlas   9931541 Nov 26 22:26 log.47556161._001576.job.log.1
[2025-11-26 22:26:28] -rw-r--r--. 1 boincer umatlas      8192 Nov 26 22:26 boinc_mmap_file
[2025-11-26 22:26:28] -rw-------. 1 boincer umatlas       353 Nov 26 22:26 output.list
[2025-11-26 22:26:28] -rw-r--r--. 1 boincer umatlas       620 Nov 26 22:26 runtime_log
[2025-11-26 22:26:28] -rw-------. 1 boincer umatlas  12339200 Nov 26 22:26 result.tar.gz
[2025-11-26 22:26:28] -rw-r--r--. 1 boincer umatlas      9353 Nov 26 22:26 runtime_log.err
[2025-11-26 22:26:28] -rw-------. 1 boincer umatlas       662 Nov 26 22:26 OEGKDmTWBi8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmHTMKDma7ScFn.diag
[2025-11-26 22:26:28] -rw-r--r--. 1 boincer umatlas     21410 Nov 26 22:26 stderr.txt
[2025-11-26 22:26:28] HITS file was successfully produced:
[2025-11-26 22:26:28] -rw-------. 1 boincer umatlas 922274215 Nov 26 22:23 shared/HITS.pool.root.1
[2025-11-26 22:26:28]  *** Contents of shared directory: ***
[2025-11-26 22:26:28] total 1313584
[2025-11-26 22:26:28] -rw-r--r--. 2 boincer umatlas 409873130 Nov 25 21:49 ATLAS.root_0
[2025-11-26 22:26:28] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 21:49 start_atlas.sh
[2025-11-26 22:26:28] -rw-r--r--. 2 boincer umatlas    590109 Nov 25 21:49 input.tar.gz
[2025-11-26 22:26:28] -rw-------. 1 boincer umatlas 922274215 Nov 26 22:23 HITS.pool.root.1
[2025-11-26 22:26:28] -rw-------. 1 boincer umatlas  12339200 Nov 26 22:26 result.tar.gz
22:26:29 (394271): run_atlas exited; CPU time 266623.184819
22:26:29 (394271): called boinc_finish(0)

</stderr_txt>
]]>

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