Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:03:36 (4017508): wrapper (7.7.26015): starting
00:03:36 (4017508): wrapper: running run_atlas (--nthreads 9)
[2025-11-26 00:03:36] Arguments: --nthreads 9
[2025-11-26 00:03:36] Threads: 9
[2025-11-26 00:03:36] Checking for CVMFS
[2025-11-26 00:03:37] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 00:03:38] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 00:03:38] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 00:03:39] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 00:03:39] 2.13.3.0 15733 28167 350776 153309 3 125 17464897 32935937 23897 16776704 0 147165288 99.717 106790300 27032 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-26 00:03:39] CVMFS is ok
[2025-11-26 00:03:39] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 00:03:39] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 00:03:39] Further information can be found at the LHC@home message board.
[2025-11-26 00:03:39] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 00:03:39] Checking for apptainer binary...
[2025-11-26 00:03:39] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 00:03:39] Running /usr/bin/apptainer --version
[2025-11-26 00:03:39] apptainer version 1.4.4-1.el9
[2025-11-26 00:03:39] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 00:03:39] c-8-39.aglt2.org
[2025-11-26 00:03:39] apptainer works
[2025-11-26 00:03:39] Set ATHENA_PROC_NUMBER=9
[2025-11-26 00:03:39] Set ATHENA_CORE_NUMBER=9
[2025-11-26 00:03:40] Starting ATLAS job with PandaID=6897139652
[2025-11-26 00:03:40] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 22:30:30]  *** The last 200 lines of the pilot log: ***
[2025-11-26 22:30:30] 2025-11-27 03:29:40,797 | INFO     | monitor loop #5130: job 0:6897139652 is in state 'finished'
[2025-11-26 22:30:30] 2025-11-27 03:29:40,834 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 22:30:30] 2025-11-27 03:29:40,987 | INFO     | time since job start (80694s) is within the limit (172800.0s)
[2025-11-26 22:30:30] 2025-11-27 03:29:43,015 | INFO     | time since job start (80697s) is within the limit (172800.0s)
[2025-11-26 22:30:30] 2025-11-27 03:29:43,371 | INFO     | monitor loop #5131: job 0:6897139652 is in state 'finished'
[2025-11-26 22:30:30] 2025-11-27 03:29:43,372 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 22:30:30] 2025-11-27 03:29:45,032 | INFO     | time since job start (80699s) is within the limit (172800.0s)
[2025-11-26 22:30:30] 2025-11-27 03:29:45,968 | INFO     | monitor loop #5132: job 0:6897139652 is in state 'finished'
[2025-11-26 22:30:30] 2025-11-27 03:29:45,998 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 22:30:30] 2025-11-27 03:29:47,039 | INFO     | time since job start (80701s) is within the limit (172800.0s)
[2025-11-26 22:30:30] 2025-11-27 03:29:48,594 | INFO     | monitor loop #5133: job 0:6897139652 is in state 'finished'
[2025-11-26 22:30:30] 2025-11-27 03:29:48,595 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 22:30:30] 2025-11-27 03:29:51,101 | INFO     | monitor loop #5134: job 0:6897139652 is in state 'finished'
[2025-11-26 22:30:30] 2025-11-27 03:29:51,101 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 22:30:30] 2025-11-27 03:29:51,348 | INFO     | PID=4024077 has CPU usage=3.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-26 22:30:30] 2025-11-27 03:29:51,348 | INFO     | .. there are 51 such processes running
[2025-11-26 22:30:30] 2025-11-27 03:29:52,029 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-26 22:30:30] 2025-11-27 03:29:52,099 | INFO     | found 24 cores (12 cores per socket, 2 sockets) HT, CPU MHz: 2752.9755000000005
[2025-11-26 22:30:30] 2025-11-27 03:29:52,156 | INFO     | using path: /tmp/boinchome/slots/4/PanDA_Pilot-6897139652/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 22:30:30] 2025-11-27 03:29:52,157 | INFO     | extracted standard info from prmon json
[2025-11-26 22:30:30] 2025-11-27 03:29:52,158 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 22:30:30] 2025-11-27 03:29:52,158 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 22:30:30] 2025-11-27 03:29:52,315 | INFO     | fitting pss+swap vs Time
[2025-11-26 22:30:30] 2025-11-27 03:29:52,342 | INFO     | sum of square deviations: 713181721367.9529
[2025-11-26 22:30:30] 2025-11-27 03:29:52,451 | INFO     | time since job start (80706s) is within the limit (172800.0s)
[2025-11-26 22:30:30] 2025-11-27 03:29:52,663 | INFO     | sum of deviations: 3948240132766.8765
[2025-11-26 22:30:30] 2025-11-27 03:29:52,664 | INFO     | mean x: 1764173858.6606061
[2025-11-26 22:30:30] 2025-11-27 03:29:52,664 | INFO     | mean y: 3066982.5265151514
[2025-11-26 22:30:30] 2025-11-27 03:29:52,664 | INFO     | intersect: -9763563065.95778
[2025-11-26 22:30:30] 2025-11-27 03:29:52,722 | INFO     | chi2: 23.71821130454462
[2025-11-26 22:30:30] 2025-11-27 03:29:52,749 | INFO     | sum of square deviations: 705108511661.1924
[2025-11-26 22:30:30] 2025-11-27 03:29:53,062 | INFO     | sum of deviations: 4438175744010.562
[2025-11-26 22:30:30] 2025-11-27 03:29:53,062 | INFO     | mean x: 1764173706.165019
[2025-11-26 22:30:30] 2025-11-27 03:29:53,062 | INFO     | mean y: 3076235.87756654
[2025-11-26 22:30:30] 2025-11-27 03:29:53,062 | INFO     | intersect: -11101190442.844662
[2025-11-26 22:30:30] 2025-11-27 03:29:53,064 | INFO     | chi2: 20.186404274121365
[2025-11-26 22:30:30] 2025-11-27 03:29:53,064 | INFO     | current chi2=20.186404274121365 (change=14.890697216052418 %)
[2025-11-26 22:30:30] 2025-11-27 03:29:53,064 | INFO     | right removable region: 1314
[2025-11-26 22:30:30] 2025-11-27 03:29:53,166 | INFO     | sum of square deviations: 705107577141.1919
[2025-11-26 22:30:30] 2025-11-27 03:29:53,353 | INFO     | sum of deviations: 3380248782414.177
[2025-11-26 22:30:30] 2025-11-27 03:29:53,353 | INFO     | mean x: 1764174011.165019
[2025-11-26 22:30:30] 2025-11-27 03:29:53,354 | INFO     | mean y: 3077709.0038022813
[2025-11-26 22:30:30] 2025-11-27 03:29:53,354 | INFO     | intersect: -8454280070.904411
[2025-11-26 22:30:30] 2025-11-27 03:29:53,363 | INFO     | chi2: 19.539402889352278
[2025-11-26 22:30:30] 2025-11-27 03:29:53,363 | INFO     | current chi2=19.539402889352278 (change=17.618564745612357 %)
[2025-11-26 22:30:30] 2025-11-27 03:29:53,363 | INFO     | left removable region: 10
[2025-11-26 22:30:30] 2025-11-27 03:29:53,365 | INFO     | sum of square deviations: 687560550878.1334
[2025-11-26 22:30:30] 2025-11-27 03:29:53,627 | INFO     | sum of deviations: 3448442374922.3086
[2025-11-26 22:30:30] 2025-11-27 03:29:53,632 | INFO     | mean x: 1764173980.6748466
[2025-11-26 22:30:30] 2025-11-27 03:29:53,632 | INFO     | mean y: 3098749.5030674846
[2025-11-26 22:30:30] 2025-11-27 03:29:53,632 | INFO     | intersect: -8845070773.78421
[2025-11-26 22:30:30] 2025-11-27 03:29:53,638 | INFO     | chi2: 11.961961646600361
[2025-11-26 22:30:30] 2025-11-27 03:29:53,638 | INFO     | current memory leak: 5.02 B/s (using 1304 data points, chi2=11.96)
[2025-11-26 22:30:30] 2025-11-27 03:29:53,639 | INFO     | could have reported an average CPU frequency of 2718 MHz (48 samples)
[2025-11-26 22:30:30] 2025-11-27 03:29:53,639 | INFO     | ..............................
[2025-11-26 22:30:30] 2025-11-27 03:29:53,640 | INFO     | . Timing measurements:
[2025-11-26 22:30:30] 2025-11-27 03:29:53,640 | INFO     | . get job = 0 s
[2025-11-26 22:30:30] 2025-11-27 03:29:53,640 | INFO     | . initial setup = 5 s
[2025-11-26 22:30:30] 2025-11-27 03:29:53,640 | INFO     | . payload setup = 43 s
[2025-11-26 22:30:30] 2025-11-27 03:29:53,640 | INFO     | . stage-in = 0 s
[2025-11-26 22:30:30] 2025-11-27 03:29:53,640 | INFO     | . payload execution = 80542 s
[2025-11-26 22:30:30] 2025-11-27 03:29:53,640 | INFO     | . stage-out = 7 s
[2025-11-26 22:30:30] 2025-11-27 03:29:53,640 | INFO     | . log creation = 2 s
[2025-11-26 22:30:30] 2025-11-27 03:29:53,640 | INFO     | ..............................
[2025-11-26 22:30:30] 2025-11-27 03:29:54,093 | INFO     | 
[2025-11-26 22:30:30] 2025-11-27 03:29:54,094 | INFO     | job summary report
[2025-11-26 22:30:30] 2025-11-27 03:29:54,094 | INFO     | --------------------------------------------------
[2025-11-26 22:30:30] 2025-11-27 03:29:54,094 | INFO     | PanDA job id: 6897139652
[2025-11-26 22:30:30] 2025-11-27 03:29:54,094 | INFO     | task id: 47556161
[2025-11-26 22:30:30] 2025-11-27 03:29:54,094 | INFO     | errors: (none)
[2025-11-26 22:30:30] 2025-11-27 03:29:54,094 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 22:30:30] 2025-11-27 03:29:54,095 | INFO     | pilot state: finished 
[2025-11-26 22:30:30] 2025-11-27 03:29:54,095 | INFO     | transexitcode: 0
[2025-11-26 22:30:30] 2025-11-27 03:29:54,095 | INFO     | exeerrorcode: 0
[2025-11-26 22:30:30] 2025-11-27 03:29:54,095 | INFO     | exeerrordiag: 
[2025-11-26 22:30:30] 2025-11-27 03:29:54,095 | INFO     | exitcode: 0
[2025-11-26 22:30:30] 2025-11-27 03:29:54,095 | INFO     | exitmsg: OK
[2025-11-26 22:30:30] 2025-11-27 03:29:54,095 | INFO     | cpuconsumptiontime: 338798 s
[2025-11-26 22:30:30] 2025-11-27 03:29:54,095 | INFO     | nevents: 1000
[2025-11-26 22:30:30] 2025-11-27 03:29:54,095 | INFO     | neventsw: 0
[2025-11-26 22:30:30] 2025-11-27 03:29:54,096 | INFO     | pid: 4036941
[2025-11-26 22:30:30] 2025-11-27 03:29:54,096 | INFO     | pgrp: 4036941
[2025-11-26 22:30:30] 2025-11-27 03:29:54,096 | INFO     | corecount: 9
[2025-11-26 22:30:30] 2025-11-27 03:29:54,096 | INFO     | event service: False
[2025-11-26 22:30:30] 2025-11-27 03:29:54,096 | INFO     | sizes: {0: 2283437, 1: 2284122, 2: 2284321, 13: 2284321, 24: 2284377, 34: 2284667, 35: 2284823, 80590: 2347455, 80600: 2356505, 80641: 2356695}
[2025-11-26 22:30:30] 2025-11-27 03:29:54,096 | INFO     | --------------------------------------------------
[2025-11-26 22:30:30] 2025-11-27 03:29:54,096 | INFO     | 
[2025-11-26 22:30:30] 2025-11-27 03:29:54,097 | INFO     | executing command: ls -lF /tmp/boinchome/slots/4
[2025-11-26 22:30:30] 2025-11-27 03:29:54,161 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 22:30:30] 2025-11-27 03:29:54,161 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 22:30:30] 2025-11-27 03:29:54,161 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 22:30:30] 2025-11-27 03:29:54,161 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 22:30:30] 2025-11-27 03:29:54,162 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 22:30:30] 2025-11-27 03:29:54,162 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 22:30:30] 2025-11-27 03:29:54,162 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 22:30:30] 2025-11-27 03:29:54,162 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 22:30:30] 2025-11-27 03:29:54,162 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 22:30:30] 2025-11-27 03:29:54,162 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 22:30:30] 2025-11-27 03:29:54,162 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 22:30:30] 2025-11-27 03:29:54,163 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 22:30:30] 2025-11-27 03:29:54,163 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 22:30:30] 2025-11-27 03:29:54,163 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 22:30:30] 2025-11-27 03:29:54,163 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 22:30:30] 2025-11-27 03:29:54,163 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 22:30:30] 2025-11-27 03:29:54,163 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 22:30:30] 2025-11-27 03:29:54,163 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 22:30:30] 2025-11-27 03:29:54,164 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 22:30:30] 2025-11-27 03:29:54,164 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 22:30:30] 2025-11-27 03:29:54,164 | INFO     | job 6897139652 has completed (purged errors)
[2025-11-26 22:30:30] 2025-11-27 03:29:54,168 | INFO     | overall cleanup function is called
[2025-11-26 22:30:30] 2025-11-27 03:29:55,210 | INFO     | --- collectZombieJob: --- 10, [4036941]
[2025-11-26 22:30:30] 2025-11-27 03:29:55,210 | INFO     | zombie collector waiting for pid 4036941
[2025-11-26 22:30:30] 2025-11-27 03:29:55,211 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 22:30:30] 2025-11-27 03:29:55,211 | INFO     | collected zombie processes
[2025-11-26 22:30:30] 2025-11-27 03:29:55,211 | INFO     | will attempt to kill all subprocesses of pid=4036941
[2025-11-26 22:30:30] 2025-11-27 03:29:56,450 | INFO     | process IDs to be killed: [4036941] (in reverse order)
[2025-11-26 22:30:30] 2025-11-27 03:29:56,677 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 22:30:30] 2025-11-27 03:29:56,677 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 22:30:30] 2025-11-27 03:29:56,727 | INFO     | did not find any defunct processes belonging to 4036941
[2025-11-26 22:30:30] 2025-11-27 03:29:56,795 | INFO     | did not find any defunct processes belonging to 4036941
[2025-11-26 22:30:30] 2025-11-27 03:29:56,797 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 22:30:30] 2025-11-27 03:29:56,797 | INFO     | ready for new job
[2025-11-26 22:30:30] 2025-11-27 03:29:56,797 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 22:30:30] 2025-11-27 03:29:56,803 | INFO     | ***************************************
[2025-11-26 22:30:30] 2025-11-27 03:29:56,803 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 22:30:30] 2025-11-27 03:29:56,803 | INFO     | ***************************************
[2025-11-26 22:30:30] 2025-11-27 03:29:56,803 | INFO     | 
[2025-11-26 22:30:30] 2025-11-27 03:29:56,806 | INFO     | architecture information:
[2025-11-26 22:30:30] 2025-11-27 03:29:56,807 | INFO     | executing command: cat /etc/os-release
[2025-11-26 22:30:30] 2025-11-27 03:29:56,830 | INFO     | cat /etc/os-release:
[2025-11-26 22:30:30] NAME="CentOS Linux"
[2025-11-26 22:30:30] VERSION="7 (Core)"
[2025-11-26 22:30:30] ID="centos"
[2025-11-26 22:30:30] ID_LIKE="rhel fedora"
[2025-11-26 22:30:30] VERSION_ID="7"
[2025-11-26 22:30:30] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 22:30:30] ANSI_COLOR="0;31"
[2025-11-26 22:30:30] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 22:30:30] HOME_URL="https://www.centos.org/"
[2025-11-26 22:30:30] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 22:30:30] 
[2025-11-26 22:30:30] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 22:30:30] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 22:30:30] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 22:30:30] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 22:30:30] 
[2025-11-26 22:30:30] 2025-11-27 03:29:56,830 | INFO     | ***************************************
[2025-11-26 22:30:30] 2025-11-27 03:29:57,337 | INFO     | executing command: df -mP /tmp/boinchome/slots/4
[2025-11-26 22:30:30] 2025-11-27 03:29:57,406 | INFO     | sufficient remaining disk space (72450310144 B)
[2025-11-26 22:30:30] 2025-11-27 03:29:57,406 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 22:30:30] 2025-11-27 03:29:57,406 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 22:30:30] 2025-11-27 03:29:57,406 | INFO     | update_server=False
[2025-11-26 22:30:30] 2025-11-27 03:29:57,407 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 22:30:30] 2025-11-27 03:29:57,407 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 22:30:30] 2025-11-27 03:29:57,407 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 22:30:30] 2025-11-27 03:29:57,407 | INFO     | aborting loop
[2025-11-26 22:30:30] 2025-11-27 03:29:57,504 | INFO     | all data control threads have been joined
[2025-11-26 22:30:30] 2025-11-27 03:29:57,740 | INFO     | all payload control threads have been joined
[2025-11-26 22:30:30] 2025-11-27 03:29:58,056 | INFO     | all job control threads have been joined
[2025-11-26 22:30:30] 2025-11-27 03:29:58,422 | INFO     | [job] retrieve thread has finished
[2025-11-26 22:30:30] 2025-11-27 03:29:58,422 | INFO     | [job] job monitor thread has finished
[2025-11-26 22:30:30] 2025-11-27 03:29:58,460 | INFO     | [job] validate thread has finished
[2025-11-26 22:30:30] 2025-11-27 03:29:58,460 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 22:30:30] 2025-11-27 03:29:58,471 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 22:30:30] 2025-11-27 03:29:58,510 | INFO     | [data] control thread has finished
[2025-11-26 22:30:30] 2025-11-27 03:29:58,611 | INFO     | [payload] validate_post thread has finished
[2025-11-26 22:30:30] 2025-11-27 03:29:58,763 | INFO     | [payload] control thread has finished
[2025-11-26 22:30:30] 2025-11-27 03:29:59,073 | INFO     | [job] control thread has finished
[2025-11-26 22:30:30] 2025-11-27 03:29:59,083 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 22:30:30] 2025-11-27 03:29:59,085 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 22:30:30] 2025-11-27 03:29:59,123 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 22:30:30] 2025-11-27 03:29:59,312 | INFO     | [payload] failed_post thread has finished
[2025-11-26 22:30:30] 2025-11-27 03:29:59,462 | INFO     | [data] copytool_out thread has finished
[2025-11-26 22:30:30] 2025-11-27 03:29:59,820 | INFO     | [data] copytool_in thread has finished
[2025-11-26 22:30:30] 2025-11-27 03:30:00,223 | INFO     | [job] queue monitor thread has finished
[2025-11-26 22:30:30] 2025-11-27 03:30:00,562 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 22:30:30] 2025-11-27 03:30:04,596 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 22:30:30] 2025-11-27 03:30:06,454 | INFO     | [monitor] cgroup control has ended
[2025-11-26 22:30:30] 2025-11-27 03:30:06,761 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140125314070336)>', '<ExcThread(monitor, started 140124448880384)>']
[2025-11-26 22:30:30] 2025-11-27 03:30:11,788 | INFO     | all workflow threads have been joined
[2025-11-26 22:30:30] 2025-11-27 03:30:11,824 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 22:30:30] 2025-11-27 03:30:11,824 | INFO     | traces error code: 0
[2025-11-26 22:30:30] 2025-11-27 03:30:11,825 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 22:30:30] 2025-11-27 03:30:27,772 | INFO     | PID=4024077 has CPU usage=5.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-26 22:30:30] 2025-11-27 03:30:27,772 | INFO     | .. there are 51 such processes running
[2025-11-26 22:30:30] 2025-11-27 03:30:27,846 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 22:30:30] 2025-11-27 03:30:27,847 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 22:30:30] 2025-11-27 03:30:27,847 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 22:30:30] 2025-11-27 03:30:27,847 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 22:30:30] 2025-11-27 03:30:27,847 | INFO     | [monitor] control thread has ended
[2025-11-26 22:30:30] 2025-11-27 03:30:29,037 [wrapper] ==== pilot stdout END ====
[2025-11-26 22:30:30] 2025-11-27 03:30:29,052 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 22:30:30] 2025-11-27 03:30:29,072 [wrapper] pilotpid: 4024077
[2025-11-26 22:30:30] 2025-11-27 03:30:29,085 [wrapper] Pilot exit status: 0
[2025-11-26 22:30:30] 2025-11-27 03:30:29,167 [wrapper] pandaids: 6897139652
[2025-11-26 22:30:30] 2025-11-27 03:30:29,335 [wrapper] cleanup supervisor_pilot 1191033 4024078
[2025-11-26 22:30:30] 2025-11-27 03:30:29,339 [wrapper] Test setup, not cleaning
[2025-11-26 22:30:30] 2025-11-27 03:30:29,342 [wrapper] apfmon messages muted
[2025-11-26 22:30:30] 2025-11-27 03:30:29,345 [wrapper] ==== wrapper stdout END ====
[2025-11-26 22:30:30] 2025-11-27 03:30:29,347 [wrapper] ==== wrapper stderr END ====
[2025-11-26 22:30:30]  *** Error codes and diagnostics ***
[2025-11-26 22:30:30]     "exeErrorCode": 0,
[2025-11-26 22:30:30]     "exeErrorDiag": "",
[2025-11-26 22:30:30]     "pilotErrorCode": 0,
[2025-11-26 22:30:30]     "pilotErrorDiag": "",
[2025-11-26 22:30:30]  *** Listing of results directory ***
[2025-11-26 22:30:30] total 1330012
[2025-11-26 22:30:30] -rw-r--r--. 1 boincer umatlas    576529 Nov 25 11:48 pilot3.tar.gz
[2025-11-26 22:30:30] -rw-r--r--. 1 boincer umatlas      5112 Nov 25 11:55 queuedata.json
[2025-11-26 22:30:30] -rwx------. 1 boincer umatlas     36292 Nov 25 11:56 runpilot2-wrapper.sh
[2025-11-26 22:30:30] -rw-r--r--. 1 boincer umatlas       100 Nov 26 00:03 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 22:30:30] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 26 00:03 run_atlas
[2025-11-26 22:30:30] -rw-r--r--. 1 boincer umatlas       105 Nov 26 00:03 job.xml
[2025-11-26 22:30:30] -rw-r--r--. 2 boincer umatlas 408134983 Nov 26 00:03 EVNT.47483658._002191.pool.root.1
[2025-11-26 22:30:30] -rw-r--r--. 2 boincer umatlas    590111 Nov 26 00:03 input.tar.gz
[2025-11-26 22:30:30] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 00:03 start_atlas.sh
[2025-11-26 22:30:30] drwxrwx--x. 2 boincer umatlas      4096 Nov 26 00:03 shared
[2025-11-26 22:30:30] -rw-r--r--. 1 boincer umatlas         0 Nov 26 00:03 boinc_lockfile
[2025-11-26 22:30:30] -rw-r--r--. 1 boincer umatlas      2786 Nov 26 00:03 pandaJob.out
[2025-11-26 22:30:30] -rw-------. 1 boincer umatlas        57 Nov 26 00:03 setup.sh.local
[2025-11-26 22:30:30] -rw-------. 1 boincer umatlas    991877 Nov 26 00:04 agis_schedconf.cvmfs.json
[2025-11-26 22:30:30] drwx------. 5 boincer umatlas      4096 Nov 26 00:04 pilot3
[2025-11-26 22:30:30] -rw-r--r--. 1 boincer umatlas       533 Nov 26 21:56 boinc_task_state.xml
[2025-11-26 22:30:30] -rw-------. 1 boincer umatlas 923610968 Nov 26 22:27 HITS.47556161._001750.pool.root.1
[2025-11-26 22:30:30] -rw-------. 1 boincer umatlas      1059 Nov 26 22:28 memory_monitor_summary.json
[2025-11-26 22:30:30] -rw-------. 1 boincer umatlas   1516240 Nov 26 22:29 agis_ddmendpoints.agis.ALL.json
[2025-11-26 22:30:30] -rw-------. 1 boincer umatlas   2539418 Nov 26 22:29 log.47556161._001750.job.log.tgz.1
[2025-11-26 22:30:30] -rw-r--r--. 1 boincer umatlas      6613 Nov 26 22:29 init_data.xml
[2025-11-26 22:30:30] -rw-------. 1 boincer umatlas      7961 Nov 26 22:29 heartbeat.json
[2025-11-26 22:30:30] -rw-------. 1 boincer umatlas        95 Nov 26 22:30 pilot_heartbeat.json
[2025-11-26 22:30:30] -rw-------. 1 boincer umatlas       823 Nov 26 22:30 pilotlog.txt
[2025-11-26 22:30:30] -rw-------. 1 boincer umatlas  10595126 Nov 26 22:30 log.47556161._001750.job.log.1
[2025-11-26 22:30:30] -rw-------. 1 boincer umatlas       353 Nov 26 22:30 output.list
[2025-11-26 22:30:30] -rw-r--r--. 1 boincer umatlas      8192 Nov 26 22:30 boinc_mmap_file
[2025-11-26 22:30:30] -rw-r--r--. 1 boincer umatlas       620 Nov 26 22:30 runtime_log
[2025-11-26 22:30:30] -rw-r--r--. 1 boincer umatlas        29 Nov 26 22:30 wrapper_checkpoint.txt
[2025-11-26 22:30:30] -rw-------. 1 boincer umatlas  13158400 Nov 26 22:30 result.tar.gz
[2025-11-26 22:30:30] -rw-r--r--. 1 boincer umatlas      9333 Nov 26 22:30 runtime_log.err
[2025-11-26 22:30:30] -rw-------. 1 boincer umatlas       658 Nov 26 22:30 oKvMDmTWBi8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmXXJKDmvLKWUm.diag
[2025-11-26 22:30:30] -rw-r--r--. 1 boincer umatlas     21875 Nov 26 22:30 stderr.txt
[2025-11-26 22:30:30] HITS file was successfully produced:
[2025-11-26 22:30:30] -rw-------. 1 boincer umatlas 923610968 Nov 26 22:27 shared/HITS.pool.root.1
[2025-11-26 22:30:30]  *** Contents of shared directory: ***
[2025-11-26 22:30:30] total 1313992
[2025-11-26 22:30:30] -rw-r--r--. 2 boincer umatlas 408134983 Nov 26 00:03 ATLAS.root_0
[2025-11-26 22:30:30] -rw-r--r--. 2 boincer umatlas    590111 Nov 26 00:03 input.tar.gz
[2025-11-26 22:30:30] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 00:03 start_atlas.sh
[2025-11-26 22:30:30] -rw-------. 1 boincer umatlas 923610968 Nov 26 22:27 HITS.pool.root.1
[2025-11-26 22:30:30] -rw-------. 1 boincer umatlas  13158400 Nov 26 22:30 result.tar.gz
22:30:32 (4017508): run_atlas exited; CPU time 342667.937773
22:30:32 (4017508): called boinc_finish(0)

</stderr_txt>
]]>

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