Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
21:19:33 (15170): wrapper (7.7.26015): starting
21:19:33 (15170): wrapper: running run_atlas (--nthreads 8)
[2025-11-25 21:19:33] Arguments: --nthreads 8
[2025-11-25 21:19:33] Threads: 8
[2025-11-25 21:19:33] Checking for CVMFS
[2025-11-25 21:19:33] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 21:19:33] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 21:19:33] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 21:19:33] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 21:19:33] 2.11.2.0 2776 42470 83792 153305 2 80 17014005 20275200 1 130560 0 5782067 99.760 2148715 27927 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-25 21:19:33] CVMFS is ok
[2025-11-25 21:19:33] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 21:19:33] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 21:19:33] Further information can be found at the LHC@home message board.
[2025-11-25 21:19:33] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 21:19:33] Checking for apptainer binary...
[2025-11-25 21:19:33] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 21:19:33] Running /usr/bin/apptainer --version
[2025-11-25 21:19:33] apptainer version 1.3.2-1.el7
[2025-11-25 21:19:33] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 21:19:35] c-115-7.aglt2.org
[2025-11-25 21:19:35] apptainer works
[2025-11-25 21:19:35] Set ATHENA_PROC_NUMBER=8
[2025-11-25 21:19:35] Set ATHENA_CORE_NUMBER=8
[2025-11-25 21:19:35] Starting ATLAS job with PandaID=6896990421
[2025-11-25 21:19:35] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
07:12:35 (19912): wrapper (7.7.26015): starting
07:12:35 (19912): wrapper: running run_atlas (--nthreads 8)
[2025-11-26 07:12:35] Arguments: --nthreads 8
[2025-11-26 07:12:35] Threads: 8
[2025-11-26 07:12:35] This job has been restarted, cleaning up previous attempt
[2025-11-26 07:12:35] Checking for CVMFS
[2025-11-26 07:12:35] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 07:12:35] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 07:12:35] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 07:12:35] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 07:12:35] 2.11.2.0 2776 43063 82316 153321 0 1 17743768 20275200 1 130560 0 5981963 99.767 2172470 28024 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-26 07:12:35] CVMFS is ok
[2025-11-26 07:12:35] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 07:12:35] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 07:12:35] Further information can be found at the LHC@home message board.
[2025-11-26 07:12:35] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 07:12:35] Checking for apptainer binary...
[2025-11-26 07:12:35] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 07:12:35] Running /usr/bin/apptainer --version
[2025-11-26 07:12:35] apptainer version 1.3.2-1.el7
[2025-11-26 07:12:35] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 07:12:37] c-115-7.aglt2.org
[2025-11-26 07:12:37] apptainer works
[2025-11-26 07:12:37] Set ATHENA_PROC_NUMBER=8
[2025-11-26 07:12:37] Set ATHENA_CORE_NUMBER=8
[2025-11-26 07:12:37] Starting ATLAS job with PandaID=6896990421
[2025-11-26 07:12:37] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 18:10:20]  *** The last 200 lines of the pilot log: ***
[2025-11-26 18:10:20] 2025-11-26 23:09:45,258 | INFO     | time since job start (39410s) is within the limit (172800.0s)
[2025-11-26 18:10:20] 2025-11-26 23:09:47,174 | INFO     | monitor loop #2904: job 0:6896990421 is in state 'finished'
[2025-11-26 18:10:20] 2025-11-26 23:09:47,174 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 18:10:20] 2025-11-26 23:09:47,264 | INFO     | time since job start (39412s) is within the limit (172800.0s)
[2025-11-26 18:10:20] 2025-11-26 23:09:48,668 | INFO     | CPU arch script returned: x86-64-v2
[2025-11-26 18:10:20] 2025-11-26 23:09:48,672 | INFO     | found 8 cores (4 cores per socket, 2 sockets) , CPU MHz: 1729.0
[2025-11-26 18:10:20] 2025-11-26 23:09:48,674 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6896990421/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 18:10:20] 2025-11-26 23:09:48,675 | INFO     | extracted standard info from prmon json
[2025-11-26 18:10:20] 2025-11-26 23:09:48,675 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 18:10:20] 2025-11-26 23:09:48,676 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 18:10:20] 2025-11-26 23:09:48,687 | INFO     | fitting pss+swap vs Time
[2025-11-26 18:10:20] 2025-11-26 23:09:48,688 | INFO     | sum of square deviations: 83593693374.84377
[2025-11-26 18:10:20] 2025-11-26 23:09:48,696 | INFO     | sum of deviations: 651370401252.4408
[2025-11-26 18:10:20] 2025-11-26 23:09:48,696 | INFO     | mean x: 1764178881.125387
[2025-11-26 18:10:20] 2025-11-26 23:09:48,696 | INFO     | mean y: 3249040.7352941176
[2025-11-26 18:10:20] 2025-11-26 23:09:48,696 | INFO     | intersect: -13743408862.354073
[2025-11-26 18:10:20] 2025-11-26 23:09:48,697 | INFO     | chi2: 6.255262208100848
[2025-11-26 18:10:20] 2025-11-26 23:09:48,698 | INFO     | sum of square deviations: 81667761875.3732
[2025-11-26 18:10:20] 2025-11-26 23:09:48,706 | INFO     | sum of deviations: 891899970804.1959
[2025-11-26 18:10:20] 2025-11-26 23:09:48,707 | INFO     | mean x: 1764178728.6302652
[2025-11-26 18:10:20] 2025-11-26 23:09:48,707 | INFO     | mean y: 3268072.422776911
[2025-11-26 18:10:20] 2025-11-26 23:09:48,707 | INFO     | intersect: -19263464851.63933
[2025-11-26 18:10:20] 2025-11-26 23:09:48,708 | INFO     | chi2: 3.1486465574900113
[2025-11-26 18:10:20] 2025-11-26 23:09:48,708 | INFO     | current chi2=3.1486465574900113 (change=49.664035611291055 %)
[2025-11-26 18:10:20] 2025-11-26 23:09:48,708 | INFO     | sum of square deviations: 79771644888.37099
[2025-11-26 18:10:20] 2025-11-26 23:09:48,717 | INFO     | sum of deviations: 962797949518.0576
[2025-11-26 18:10:20] 2025-11-26 23:09:48,717 | INFO     | mean x: 1764178576.13522
[2025-11-26 18:10:20] 2025-11-26 23:09:48,717 | INFO     | mean y: 3273752.952830189
[2025-11-26 18:10:20] 2025-11-26 23:09:48,717 | INFO     | intersect: -21289348682.795494
[2025-11-26 18:10:20] 2025-11-26 23:09:48,718 | INFO     | chi2: 2.619909880302642
[2025-11-26 18:10:20] 2025-11-26 23:09:48,718 | INFO     | current chi2=2.619909880302642 (change=16.792506479636735 %)
[2025-11-26 18:10:20] 2025-11-26 23:09:48,718 | INFO     | right removable region: 635
[2025-11-26 18:10:20] 2025-11-26 23:09:48,719 | INFO     | sum of square deviations: 81667515435.37326
[2025-11-26 18:10:20] 2025-11-26 23:09:48,727 | INFO     | sum of deviations: 444055338990.09753
[2025-11-26 18:10:20] 2025-11-26 23:09:48,727 | INFO     | mean x: 1764179033.6302652
[2025-11-26 18:10:20] 2025-11-26 23:09:48,727 | INFO     | mean y: 3265424.3042121683
[2025-11-26 18:10:20] 2025-11-26 23:09:48,728 | INFO     | intersect: -9589203682.189423
[2025-11-26 18:10:20] 2025-11-26 23:09:48,728 | INFO     | chi2: 3.843890801590568
[2025-11-26 18:10:20] 2025-11-26 23:09:48,728 | INFO     | current chi2=3.843890801590568 (change=38.54948563766751 %)
[2025-11-26 18:10:20] 2025-11-26 23:09:48,729 | INFO     | sum of square deviations: 79771191353.63988
[2025-11-26 18:10:20] 2025-11-26 23:09:48,737 | INFO     | sum of deviations: 392586862177.97656
[2025-11-26 18:10:20] 2025-11-26 23:09:48,737 | INFO     | mean x: 1764179186.1336477
[2025-11-26 18:10:20] 2025-11-26 23:09:48,737 | INFO     | mean y: 3269561.117924528
[2025-11-26 18:10:20] 2025-11-26 23:09:48,737 | INFO     | intersect: -8678982254.998432
[2025-11-26 18:10:20] 2025-11-26 23:09:48,738 | INFO     | chi2: 3.7649785165668628
[2025-11-26 18:10:20] 2025-11-26 23:09:48,738 | INFO     | current chi2=3.7649785165668628 (change=2.052927335788316 %)
[2025-11-26 18:10:20] 2025-11-26 23:09:48,738 | INFO     | left removable region: 20
[2025-11-26 18:10:20] 2025-11-26 23:09:48,739 | INFO     | sum of square deviations: 72127599523.01472
[2025-11-26 18:10:20] 2025-11-26 23:09:48,747 | INFO     | sum of deviations: 636317287284.5518
[2025-11-26 18:10:20] 2025-11-26 23:09:48,747 | INFO     | mean x: 1764179155.6439025
[2025-11-26 18:10:20] 2025-11-26 23:09:48,747 | INFO     | mean y: 3300282.9203252033
[2025-11-26 18:10:20] 2025-11-26 23:09:48,747 | INFO     | intersect: -15560474222.636084
[2025-11-26 18:10:20] 2025-11-26 23:09:48,748 | INFO     | chi2: 0.06712898684223575
[2025-11-26 18:10:20] 2025-11-26 23:09:48,748 | INFO     | current memory leak: 8.82 B/s (using 615 data points, chi2=0.07)
[2025-11-26 18:10:20] 2025-11-26 23:09:48,748 | INFO     | could have reported an average CPU frequency of 2380 MHz (25 samples)
[2025-11-26 18:10:20] 2025-11-26 23:09:48,749 | INFO     | ..............................
[2025-11-26 18:10:20] 2025-11-26 23:09:48,749 | INFO     | . Timing measurements:
[2025-11-26 18:10:20] 2025-11-26 23:09:48,749 | INFO     | . get job = 0 s
[2025-11-26 18:10:20] 2025-11-26 23:09:48,749 | INFO     | . initial setup = 2 s
[2025-11-26 18:10:20] 2025-11-26 23:09:48,749 | INFO     | . payload setup = 9 s
[2025-11-26 18:10:20] 2025-11-26 23:09:48,749 | INFO     | . stage-in = 0 s
[2025-11-26 18:10:20] 2025-11-26 23:09:48,749 | INFO     | . payload execution = 39370 s
[2025-11-26 18:10:20] 2025-11-26 23:09:48,749 | INFO     | . stage-out = 3 s
[2025-11-26 18:10:20] 2025-11-26 23:09:48,749 | INFO     | . log creation = 0 s
[2025-11-26 18:10:20] 2025-11-26 23:09:48,749 | INFO     | ..............................
[2025-11-26 18:10:20] 2025-11-26 23:09:49,216 | INFO     | 
[2025-11-26 18:10:20] 2025-11-26 23:09:49,217 | INFO     | job summary report
[2025-11-26 18:10:20] 2025-11-26 23:09:49,217 | INFO     | --------------------------------------------------
[2025-11-26 18:10:20] 2025-11-26 23:09:49,217 | INFO     | PanDA job id: 6896990421
[2025-11-26 18:10:20] 2025-11-26 23:09:49,217 | INFO     | task id: 47556161
[2025-11-26 18:10:20] 2025-11-26 23:09:49,217 | INFO     | errors: (none)
[2025-11-26 18:10:20] 2025-11-26 23:09:49,218 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 18:10:20] 2025-11-26 23:09:49,218 | INFO     | pilot state: finished 
[2025-11-26 18:10:20] 2025-11-26 23:09:49,218 | INFO     | transexitcode: 0
[2025-11-26 18:10:20] 2025-11-26 23:09:49,218 | INFO     | exeerrorcode: 0
[2025-11-26 18:10:20] 2025-11-26 23:09:49,218 | INFO     | exeerrordiag: 
[2025-11-26 18:10:20] 2025-11-26 23:09:49,218 | INFO     | exitcode: 0
[2025-11-26 18:10:20] 2025-11-26 23:09:49,219 | INFO     | exitmsg: OK
[2025-11-26 18:10:20] 2025-11-26 23:09:49,219 | INFO     | cpuconsumptiontime: 306015 s
[2025-11-26 18:10:20] 2025-11-26 23:09:49,219 | INFO     | nevents: 1000
[2025-11-26 18:10:20] 2025-11-26 23:09:49,219 | INFO     | neventsw: 0
[2025-11-26 18:10:20] 2025-11-26 23:09:49,219 | INFO     | pid: 30141
[2025-11-26 18:10:20] 2025-11-26 23:09:49,219 | INFO     | pgrp: 30141
[2025-11-26 18:10:20] 2025-11-26 23:09:49,219 | INFO     | corecount: 8
[2025-11-26 18:10:20] 2025-11-26 23:09:49,219 | INFO     | event service: False
[2025-11-26 18:10:20] 2025-11-26 23:09:49,219 | INFO     | sizes: {0: 2284265, 6: 2284527, 11: 2284555, 39383: 2327864, 39387: 2336858, 39388: 2336914, 39396: 2337352}
[2025-11-26 18:10:20] 2025-11-26 23:09:49,220 | INFO     | --------------------------------------------------
[2025-11-26 18:10:20] 2025-11-26 23:09:49,220 | INFO     | 
[2025-11-26 18:10:20] 2025-11-26 23:09:49,220 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-26 18:10:20] 2025-11-26 23:09:49,247 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 18:10:20] 2025-11-26 23:09:49,248 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 18:10:20] 2025-11-26 23:09:49,248 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 18:10:20] 2025-11-26 23:09:49,248 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 18:10:20] 2025-11-26 23:09:49,248 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 18:10:20] 2025-11-26 23:09:49,248 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 18:10:20] 2025-11-26 23:09:49,249 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 18:10:20] 2025-11-26 23:09:49,249 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 18:10:20] 2025-11-26 23:09:49,249 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 18:10:20] 2025-11-26 23:09:49,249 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 18:10:20] 2025-11-26 23:09:49,249 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 18:10:20] 2025-11-26 23:09:49,250 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 18:10:20] 2025-11-26 23:09:49,250 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 18:10:20] 2025-11-26 23:09:49,250 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 18:10:20] 2025-11-26 23:09:49,250 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 18:10:20] 2025-11-26 23:09:49,250 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 18:10:20] 2025-11-26 23:09:49,250 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 18:10:20] 2025-11-26 23:09:49,251 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 18:10:20] 2025-11-26 23:09:49,251 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 18:10:20] 2025-11-26 23:09:49,251 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 18:10:20] 2025-11-26 23:09:49,251 | INFO     | job 6896990421 has completed (purged errors)
[2025-11-26 18:10:20] 2025-11-26 23:09:49,252 | INFO     | overall cleanup function is called
[2025-11-26 18:10:20] 2025-11-26 23:09:50,268 | INFO     | --- collectZombieJob: --- 10, [30141]
[2025-11-26 18:10:20] 2025-11-26 23:09:50,268 | INFO     | zombie collector waiting for pid 30141
[2025-11-26 18:10:20] 2025-11-26 23:09:50,275 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 18:10:20] 2025-11-26 23:09:50,276 | INFO     | collected zombie processes
[2025-11-26 18:10:20] 2025-11-26 23:09:50,276 | INFO     | will attempt to kill all subprocesses of pid=30141
[2025-11-26 18:10:20] 2025-11-26 23:09:50,358 | INFO     | process IDs to be killed: [30141] (in reverse order)
[2025-11-26 18:10:20] 2025-11-26 23:09:50,419 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 18:10:20] 2025-11-26 23:09:50,420 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 18:10:20] 2025-11-26 23:09:50,422 | INFO     | did not find any defunct processes belonging to 30141
[2025-11-26 18:10:20] 2025-11-26 23:09:50,425 | INFO     | did not find any defunct processes belonging to 30141
[2025-11-26 18:10:20] 2025-11-26 23:09:50,428 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 18:10:20] 2025-11-26 23:09:50,428 | INFO     | ready for new job
[2025-11-26 18:10:20] 2025-11-26 23:09:50,428 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 18:10:20] 2025-11-26 23:09:50,432 | INFO     | ***************************************
[2025-11-26 18:10:20] 2025-11-26 23:09:50,432 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 18:10:20] 2025-11-26 23:09:50,432 | INFO     | ***************************************
[2025-11-26 18:10:20] 2025-11-26 23:09:50,432 | INFO     | 
[2025-11-26 18:10:20] 2025-11-26 23:09:50,433 | INFO     | architecture information:
[2025-11-26 18:10:20] 2025-11-26 23:09:50,434 | INFO     | executing command: cat /etc/os-release
[2025-11-26 18:10:20] 2025-11-26 23:09:50,452 | INFO     | cat /etc/os-release:
[2025-11-26 18:10:20] NAME="CentOS Linux"
[2025-11-26 18:10:20] VERSION="7 (Core)"
[2025-11-26 18:10:20] ID="centos"
[2025-11-26 18:10:20] ID_LIKE="rhel fedora"
[2025-11-26 18:10:20] VERSION_ID="7"
[2025-11-26 18:10:20] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 18:10:20] ANSI_COLOR="0;31"
[2025-11-26 18:10:20] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 18:10:20] HOME_URL="https://www.centos.org/"
[2025-11-26 18:10:20] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 18:10:20] 
[2025-11-26 18:10:20] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 18:10:20] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 18:10:20] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 18:10:20] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 18:10:20] 
[2025-11-26 18:10:20] 2025-11-26 23:09:50,452 | INFO     | ***************************************
[2025-11-26 18:10:20] 2025-11-26 23:09:50,956 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-26 18:10:20] 2025-11-26 23:09:50,978 | INFO     | sufficient remaining disk space (17080254464 B)
[2025-11-26 18:10:20] 2025-11-26 23:09:50,978 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 18:10:20] 2025-11-26 23:09:50,978 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 18:10:20] 2025-11-26 23:09:50,979 | INFO     | update_server=False
[2025-11-26 18:10:20] 2025-11-26 23:09:50,979 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 18:10:20] 2025-11-26 23:09:50,979 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 18:10:20] 2025-11-26 23:09:50,980 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 18:10:20] 2025-11-26 23:09:50,980 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 18:10:20] 2025-11-26 23:09:50,980 | INFO     | aborting loop
[2025-11-26 18:10:20] 2025-11-26 23:09:51,764 | INFO     | all job control threads have been joined
[2025-11-26 18:10:20] 2025-11-26 23:09:51,953 | INFO     | all data control threads have been joined
[2025-11-26 18:10:20] 2025-11-26 23:09:51,980 | INFO     | [job] retrieve thread has finished
[2025-11-26 18:10:20] 2025-11-26 23:09:51,986 | INFO     | [job] job monitor thread has finished
[2025-11-26 18:10:20] 2025-11-26 23:09:52,092 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 18:10:20] 2025-11-26 23:09:52,138 | INFO     | all payload control threads have been joined
[2025-11-26 18:10:20] 2025-11-26 23:09:52,770 | INFO     | [job] control thread has finished
[2025-11-26 18:10:20] 2025-11-26 23:09:52,916 | INFO     | [payload] validate_post thread has finished
[2025-11-26 18:10:20] 2025-11-26 23:09:52,959 | INFO     | [data] control thread has finished
[2025-11-26 18:10:20] 2025-11-26 23:09:52,981 | INFO     | [data] copytool_out thread has finished
[2025-11-26 18:10:20] 2025-11-26 23:09:53,140 | INFO     | [payload] control thread has finished
[2025-11-26 18:10:20] 2025-11-26 23:09:53,143 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 18:10:20] 2025-11-26 23:09:53,197 | INFO     | [job] validate thread has finished
[2025-11-26 18:10:20] 2025-11-26 23:09:53,263 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 18:10:20] 2025-11-26 23:09:53,402 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 18:10:20] 2025-11-26 23:09:53,432 | INFO     | [data] copytool_in thread has finished
[2025-11-26 18:10:20] 2025-11-26 23:09:53,474 | INFO     | [payload] failed_post thread has finished
[2025-11-26 18:10:20] 2025-11-26 23:09:53,844 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 18:10:20] 2025-11-26 23:09:54,850 | INFO     | [job] queue monitor thread has finished
[2025-11-26 18:10:20] 2025-11-26 23:09:54,986 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 18:10:20] 2025-11-26 23:10:00,143 | INFO     | [monitor] cgroup control has ended
[2025-11-26 18:10:20] 2025-11-26 23:10:00,569 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140330859607872)>', '<ExcThread(monitor, started 140330095585024)>']
[2025-11-26 18:10:20] 2025-11-26 23:10:05,597 | INFO     | all workflow threads have been joined
[2025-11-26 18:10:20] 2025-11-26 23:10:05,598 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 18:10:20] 2025-11-26 23:10:05,598 | INFO     | traces error code: 0
[2025-11-26 18:10:20] 2025-11-26 23:10:05,599 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 18:10:20] 2025-11-26 23:10:20,526 | INFO     | PID=23631 has CPU usage=1.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-26 18:10:20] 2025-11-26 23:10:20,527 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 18:10:20] 2025-11-26 23:10:20,527 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 18:10:20] 2025-11-26 23:10:20,527 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 18:10:20] 2025-11-26 23:10:20,527 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 18:10:20] 2025-11-26 23:10:20,528 | INFO     | [monitor] control thread has ended
[2025-11-26 18:10:20] 2025-11-26 23:10:20,653 [wrapper] ==== pilot stdout END ====
[2025-11-26 18:10:20] 2025-11-26 23:10:20,658 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 18:10:20] 2025-11-26 23:10:20,663 [wrapper] pilotpid: 23631
[2025-11-26 18:10:20] 2025-11-26 23:10:20,668 [wrapper] Pilot exit status: 0
[2025-11-26 18:10:20] 2025-11-26 23:10:20,684 [wrapper] pandaids: 6896990421 6896990421
[2025-11-26 18:10:20] 2025-11-26 23:10:20,738 [wrapper] cleanup supervisor_pilot   438 23632
[2025-11-26 18:10:20] 2025-11-26 23:10:20,743 [wrapper] Test setup, not cleaning
[2025-11-26 18:10:20] 2025-11-26 23:10:20,748 [wrapper] apfmon messages muted
[2025-11-26 18:10:20] 2025-11-26 23:10:20,752 [wrapper] ==== wrapper stdout END ====
[2025-11-26 18:10:20] 2025-11-26 23:10:20,757 [wrapper] ==== wrapper stderr END ====
[2025-11-26 18:10:20]  *** Error codes and diagnostics ***
[2025-11-26 18:10:20]     "exeErrorCode": 0,
[2025-11-26 18:10:20]     "exeErrorDiag": "",
[2025-11-26 18:10:20]     "pilotErrorCode": 0,
[2025-11-26 18:10:20]     "pilotErrorDiag": "",
[2025-11-26 18:10:20]  *** Listing of results directory ***
[2025-11-26 18:10:20] total 1697656
[2025-11-26 18:10:20] drwx------ 5 boincer umatlas      4096 Nov  5 12:16 pilot3
[2025-11-26 18:10:20] -rw-r--r-- 1 boincer umatlas    576529 Nov 25 11:48 pilot3.tar.gz
[2025-11-26 18:10:20] -rw-r--r-- 1 boincer umatlas      5112 Nov 25 11:55 queuedata.json
[2025-11-26 18:10:20] -rwx------ 1 boincer umatlas     36292 Nov 25 11:56 runpilot2-wrapper.sh
[2025-11-26 18:10:20] -rw-r--r-- 1 boincer umatlas       100 Nov 25 21:19 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 18:10:20] -rwxr-xr-x 1 boincer umatlas      7986 Nov 25 21:19 run_atlas
[2025-11-26 18:10:20] -rw-r--r-- 1 boincer umatlas       105 Nov 25 21:19 job.xml
[2025-11-26 18:10:20] -rw-r--r-- 3 boincer umatlas 408829385 Nov 25 21:19 EVNT.47483658._002173.pool.root.1
[2025-11-26 18:10:20] -rw-r--r-- 3 boincer umatlas 408829385 Nov 25 21:19 ATLAS.root_0
[2025-11-26 18:10:20] -rw-r--r-- 2 boincer umatlas    590113 Nov 25 21:19 input.tar.gz
[2025-11-26 18:10:20] -rw-r--r-- 2 boincer umatlas     15847 Nov 25 21:19 start_atlas.sh
[2025-11-26 18:10:20] drwxrwx--x 2 boincer umatlas      4096 Nov 25 21:19 shared
[2025-11-26 18:10:20] -rw-r--r-- 1 boincer umatlas         0 Nov 25 21:19 boinc_lockfile
[2025-11-26 18:10:20] -rw-r--r-- 1 boincer umatlas      2786 Nov 26 07:12 pandaJob.out
[2025-11-26 18:10:20] -rw------- 1 boincer umatlas        57 Nov 26 07:12 setup.sh.local
[2025-11-26 18:10:20] -rw------- 1 boincer umatlas    991830 Nov 26 07:12 agis_schedconf.cvmfs.json
[2025-11-26 18:10:20] -rw-r--r-- 1 boincer umatlas       533 Nov 26 18:01 boinc_task_state.xml
[2025-11-26 18:10:20] -rw------- 1 boincer umatlas 902119523 Nov 26 18:09 HITS.47556161._001568.pool.root.1
[2025-11-26 18:10:20] -rw------- 1 boincer umatlas      1059 Nov 26 18:09 memory_monitor_summary.json
[2025-11-26 18:10:20] -rw-r--r-- 1 boincer umatlas      5912 Nov 26 18:09 init_data.xml
[2025-11-26 18:10:20] -rw------- 1 boincer umatlas   1516240 Nov 26 18:09 agis_ddmendpoints.agis.ALL.json
[2025-11-26 18:10:20] -rw------- 1 boincer umatlas   1908585 Nov 26 18:09 log.47556161._001568.job.log.tgz.1
[2025-11-26 18:10:20] -rw------- 1 boincer umatlas      8656 Nov 26 18:09 heartbeat.json
[2025-11-26 18:10:20] -rw-r--r-- 1 boincer umatlas      8192 Nov 26 18:10 boinc_mmap_file
[2025-11-26 18:10:20] -rw-r--r-- 1 boincer umatlas        29 Nov 26 18:10 wrapper_checkpoint.txt
[2025-11-26 18:10:20] -rw------- 1 boincer umatlas        96 Nov 26 18:10 pilot_heartbeat.json
[2025-11-26 18:10:20] -rw------- 1 boincer umatlas       745 Nov 26 18:10 pilotlog.txt
[2025-11-26 18:10:20] -rw------- 1 boincer umatlas   5446889 Nov 26 18:10 log.47556161._001568.job.log.1
[2025-11-26 18:10:20] -rw------- 1 boincer umatlas       353 Nov 26 18:10 output.list
[2025-11-26 18:10:20] -rw-r--r-- 1 boincer umatlas       620 Nov 26 18:10 runtime_log
[2025-11-26 18:10:20] -rw------- 1 boincer umatlas   7372800 Nov 26 18:10 result.tar.gz
[2025-11-26 18:10:20] -rw------- 1 boincer umatlas       792 Nov 26 18:10 XjyMDmSWBi8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmATMKDmutu6Eo.diag
[2025-11-26 18:10:20] -rw-r--r-- 1 boincer umatlas      9423 Nov 26 18:10 runtime_log.err
[2025-11-26 18:10:20] -rw-r--r-- 1 boincer umatlas     23442 Nov 26 18:10 stderr.txt
[2025-11-26 18:10:20] HITS file was successfully produced:
[2025-11-26 18:10:20] -rw------- 1 boincer umatlas 902119523 Nov 26 18:09 shared/HITS.pool.root.1
[2025-11-26 18:10:20]  *** Contents of shared directory: ***
[2025-11-26 18:10:20] total 1288028
[2025-11-26 18:10:20] -rw-r--r-- 3 boincer umatlas 408829385 Nov 25 21:19 ATLAS.root_0
[2025-11-26 18:10:20] -rw-r--r-- 2 boincer umatlas    590113 Nov 25 21:19 input.tar.gz
[2025-11-26 18:10:20] -rw-r--r-- 2 boincer umatlas     15847 Nov 25 21:19 start_atlas.sh
[2025-11-26 18:10:20] -rw------- 1 boincer umatlas 902119523 Nov 26 18:09 HITS.pool.root.1
[2025-11-26 18:10:20] -rw------- 1 boincer umatlas   7372800 Nov 26 18:10 result.tar.gz
18:10:21 (19912): run_atlas exited; CPU time 304145.420863
18:10:21 (19912): called boinc_finish(0)

</stderr_txt>
]]>

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