Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:02:06 (3606783): wrapper (7.7.26015): starting
00:02:06 (3606783): wrapper: running run_atlas (--nthreads 9)
[2025-11-26 00:02:07] Arguments: --nthreads 9
[2025-11-26 00:02:07] Threads: 9
[2025-11-26 00:02:07] Checking for CVMFS
[2025-11-26 00:02:07] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 00:02:08] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 00:02:08] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 00:02:09] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 00:02:09] 2.13.3.0 9262 29470 312120 153309 0 121 24015326 32935936 20645 16776704 0 149519266 99.773 83978022 33671 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-26 00:02:09] CVMFS is ok
[2025-11-26 00:02:09] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 00:02:09] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 00:02:09] Further information can be found at the LHC@home message board.
[2025-11-26 00:02:09] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 00:02:09] Checking for apptainer binary...
[2025-11-26 00:02:09] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 00:02:09] Running /usr/bin/apptainer --version
[2025-11-26 00:02:09] apptainer version 1.4.4-1.el9
[2025-11-26 00:02:09] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 00:02:09] c-8-32.aglt2.org
[2025-11-26 00:02:09] apptainer works
[2025-11-26 00:02:09] Set ATHENA_PROC_NUMBER=9
[2025-11-26 00:02:09] Set ATHENA_CORE_NUMBER=9
[2025-11-26 00:02:09] Starting ATLAS job with PandaID=6896990420
[2025-11-26 00:02:09] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 20:13:19]  *** The last 200 lines of the pilot log: ***
[2025-11-26 20:13:19] 2025-11-27 01:12:13,133 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-26 20:13:19] 2025-11-27 01:12:13,165 | INFO     | found 20 cores (10 cores per socket, 2 sockets) HT, CPU MHz: 2600.2318500000006
[2025-11-26 20:13:19] 2025-11-27 01:12:13,173 | INFO     | using path: /tmp/boinchome/slots/3/PanDA_Pilot-6896990420/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 20:13:19] 2025-11-27 01:12:13,174 | INFO     | extracted standard info from prmon json
[2025-11-26 20:13:19] 2025-11-27 01:12:13,174 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 20:13:19] 2025-11-27 01:12:13,175 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 20:13:19] 2025-11-27 01:12:13,198 | INFO     | fitting pss+swap vs Time
[2025-11-26 20:13:19] 2025-11-27 01:12:13,207 | INFO     | sum of square deviations: 518571015356.7225
[2025-11-26 20:13:19] 2025-11-27 01:12:13,365 | INFO     | sum of deviations: 4057651228321.7036
[2025-11-26 20:13:19] 2025-11-27 01:12:13,382 | INFO     | mean x: 1764169678.117102
[2025-11-26 20:13:19] 2025-11-27 01:12:13,382 | INFO     | mean y: 3033354.354675653
[2025-11-26 20:13:19] 2025-11-27 01:12:13,382 | INFO     | intersect: -13801026358.576918
[2025-11-26 20:13:19] 2025-11-27 01:12:13,384 | INFO     | chi2: 10.281820249645254
[2025-11-26 20:13:19] 2025-11-27 01:12:13,385 | INFO     | sum of square deviations: 512045520677.95703
[2025-11-26 20:13:19] 2025-11-27 01:12:13,590 | INFO     | monitor loop #4866: job 0:6896990420 is in state 'finished'
[2025-11-26 20:13:19] 2025-11-27 01:12:13,590 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 20:13:19] 2025-11-27 01:12:13,624 | INFO     | sum of deviations: 4501558890392.339
[2025-11-26 20:13:19] 2025-11-27 01:12:13,625 | INFO     | mean x: 1764169525.6218274
[2025-11-26 20:13:19] 2025-11-27 01:12:13,625 | INFO     | mean y: 3043730.12605753
[2025-11-26 20:13:19] 2025-11-27 01:12:13,625 | INFO     | intersect: -15506344969.744753
[2025-11-26 20:13:19] 2025-11-27 01:12:13,641 | INFO     | chi2: 6.781784885771309
[2025-11-26 20:13:19] 2025-11-27 01:12:13,642 | INFO     | current chi2=6.781784885771309 (change=34.041009071275134 %)
[2025-11-26 20:13:19] 2025-11-27 01:12:13,643 | INFO     | sum of square deviations: 505575003774.138
[2025-11-26 20:13:19] 2025-11-27 01:12:13,915 | INFO     | sum of deviations: 4773039929619.005
[2025-11-26 20:13:19] 2025-11-27 01:12:13,940 | INFO     | mean x: 1764169373.126593
[2025-11-26 20:13:19] 2025-11-27 01:12:13,940 | INFO     | mean y: 3050123.0603228547
[2025-11-26 20:13:19] 2025-11-27 01:12:13,940 | INFO     | intersect: -16652146035.145973
[2025-11-26 20:13:19] 2025-11-27 01:12:13,950 | INFO     | chi2: 5.129988434394809
[2025-11-26 20:13:19] 2025-11-27 01:12:13,950 | INFO     | current chi2=5.129988434394809 (change=24.356367522687016 %)
[2025-11-26 20:13:19] 2025-11-27 01:12:13,950 | INFO     | right removable region: 1176
[2025-11-26 20:13:19] 2025-11-27 01:12:13,952 | INFO     | sum of square deviations: 512044711817.957
[2025-11-26 20:13:19] 2025-11-27 01:12:14,252 | INFO     | sum of deviations: 3585741776477.208
[2025-11-26 20:13:19] 2025-11-27 01:12:14,253 | INFO     | mean x: 1764169830.6218274
[2025-11-26 20:13:19] 2025-11-27 01:12:14,253 | INFO     | mean y: 3044379.255499154
[2025-11-26 20:13:19] 2025-11-27 01:12:14,253 | INFO     | intersect: -12351067120.113693
[2025-11-26 20:13:19] 2025-11-27 01:12:14,284 | INFO     | chi2: 6.659434145195189
[2025-11-26 20:13:19] 2025-11-27 01:12:14,284 | INFO     | current chi2=6.659434145195189 (change=35.2309806677961 %)
[2025-11-26 20:13:19] 2025-11-27 01:12:14,286 | INFO     | sum of square deviations: 505573457913.38965
[2025-11-26 20:13:19] 2025-11-27 01:12:14,569 | INFO     | sum of deviations: 3317245256694.307
[2025-11-26 20:13:19] 2025-11-27 01:12:14,570 | INFO     | mean x: 1764169983.1257434
[2025-11-26 20:13:19] 2025-11-27 01:12:14,570 | INFO     | mean y: 3050703.085811385
[2025-11-26 20:13:19] 2025-11-27 01:12:14,570 | INFO     | intersect: -11572288976.88784
[2025-11-26 20:13:19] 2025-11-27 01:12:14,596 | INFO     | chi2: 5.585974490335182
[2025-11-26 20:13:19] 2025-11-27 01:12:14,596 | INFO     | current chi2=5.585974490335182 (change=16.119382389786278 %)
[2025-11-26 20:13:19] 2025-11-27 01:12:14,596 | INFO     | left removable region: 20
[2025-11-26 20:13:19] 2025-11-27 01:12:14,598 | INFO     | sum of square deviations: 478991630389.6765
[2025-11-26 20:13:19] 2025-11-27 01:12:14,663 | INFO     | time since job start (72547s) is within the limit (172800.0s)
[2025-11-26 20:13:19] 2025-11-27 01:12:14,833 | INFO     | sum of deviations: 3830007886023.7793
[2025-11-26 20:13:19] 2025-11-27 01:12:14,834 | INFO     | mean x: 1764169952.6358132
[2025-11-26 20:13:19] 2025-11-27 01:12:14,834 | INFO     | mean y: 3073317.7975778547
[2025-11-26 20:13:19] 2025-11-27 01:12:14,834 | INFO     | intersect: -14103195773.761456
[2025-11-26 20:13:19] 2025-11-27 01:12:14,864 | INFO     | chi2: 0.20597235241331738
[2025-11-26 20:13:19] 2025-11-27 01:12:14,864 | INFO     | current memory leak: 8.00 B/s (using 1156 data points, chi2=0.21)
[2025-11-26 20:13:19] 2025-11-27 01:12:14,865 | INFO     | could have reported an average CPU frequency of 2598 MHz (43 samples)
[2025-11-26 20:13:19] 2025-11-27 01:12:14,865 | INFO     | ..............................
[2025-11-26 20:13:19] 2025-11-27 01:12:14,865 | INFO     | . Timing measurements:
[2025-11-26 20:13:19] 2025-11-27 01:12:14,866 | INFO     | . get job = 0 s
[2025-11-26 20:13:19] 2025-11-27 01:12:14,866 | INFO     | . initial setup = 6 s
[2025-11-26 20:13:19] 2025-11-27 01:12:14,866 | INFO     | . payload setup = 30 s
[2025-11-26 20:13:19] 2025-11-27 01:12:14,866 | INFO     | . stage-in = 0 s
[2025-11-26 20:13:19] 2025-11-27 01:12:14,866 | INFO     | . payload execution = 72428 s
[2025-11-26 20:13:19] 2025-11-27 01:12:14,866 | INFO     | . stage-out = 6 s
[2025-11-26 20:13:19] 2025-11-27 01:12:14,866 | INFO     | . log creation = 1 s
[2025-11-26 20:13:19] 2025-11-27 01:12:14,866 | INFO     | ..............................
[2025-11-26 20:13:19] 2025-11-27 01:12:15,670 | INFO     | 
[2025-11-26 20:13:19] 2025-11-27 01:12:15,670 | INFO     | job summary report
[2025-11-26 20:13:19] 2025-11-27 01:12:15,671 | INFO     | --------------------------------------------------
[2025-11-26 20:13:19] 2025-11-27 01:12:15,671 | INFO     | PanDA job id: 6896990420
[2025-11-26 20:13:19] 2025-11-27 01:12:15,671 | INFO     | task id: 47556161
[2025-11-26 20:13:19] 2025-11-27 01:12:15,671 | INFO     | errors: (none)
[2025-11-26 20:13:19] 2025-11-27 01:12:15,671 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 20:13:19] 2025-11-27 01:12:15,671 | INFO     | pilot state: finished 
[2025-11-26 20:13:19] 2025-11-27 01:12:15,671 | INFO     | transexitcode: 0
[2025-11-26 20:13:19] 2025-11-27 01:12:15,671 | INFO     | exeerrorcode: 0
[2025-11-26 20:13:19] 2025-11-27 01:12:15,671 | INFO     | exeerrordiag: 
[2025-11-26 20:13:19] 2025-11-27 01:12:15,672 | INFO     | exitcode: 0
[2025-11-26 20:13:19] 2025-11-27 01:12:15,672 | INFO     | exitmsg: OK
[2025-11-26 20:13:19] 2025-11-27 01:12:15,672 | INFO     | cpuconsumptiontime: 298594 s
[2025-11-26 20:13:19] 2025-11-27 01:12:15,672 | INFO     | nevents: 1000
[2025-11-26 20:13:19] 2025-11-27 01:12:15,672 | INFO     | neventsw: 0
[2025-11-26 20:13:19] 2025-11-27 01:12:15,672 | INFO     | pid: 3636874
[2025-11-26 20:13:19] 2025-11-27 01:12:15,672 | INFO     | pgrp: 3636874
[2025-11-26 20:13:19] 2025-11-27 01:12:15,672 | INFO     | corecount: 9
[2025-11-26 20:13:19] 2025-11-27 01:12:15,672 | INFO     | event service: False
[2025-11-26 20:13:19] 2025-11-27 01:12:15,673 | INFO     | sizes: {0: 2284094, 1: 2284122, 2: 2284293, 13: 2284321, 23: 2284377, 32: 2284667, 35: 2284823, 72460: 2345052, 72461: 2345051, 72467: 2354101, 72468: 2354157, 724
[2025-11-26 20:13:19] 2025-11-27 01:12:15,673 | INFO     | --------------------------------------------------
[2025-11-26 20:13:19] 2025-11-27 01:12:15,673 | INFO     | 
[2025-11-26 20:13:19] 2025-11-27 01:12:15,673 | INFO     | executing command: ls -lF /tmp/boinchome/slots/3
[2025-11-26 20:13:19] 2025-11-27 01:12:15,743 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 20:13:19] 2025-11-27 01:12:15,744 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 20:13:19] 2025-11-27 01:12:15,744 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 20:13:19] 2025-11-27 01:12:15,744 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 20:13:19] 2025-11-27 01:12:15,744 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 20:13:19] 2025-11-27 01:12:15,744 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 20:13:19] 2025-11-27 01:12:15,744 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 20:13:19] 2025-11-27 01:12:15,744 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 20:13:19] 2025-11-27 01:12:15,744 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 20:13:19] 2025-11-27 01:12:15,745 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 20:13:19] 2025-11-27 01:12:15,745 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 20:13:19] 2025-11-27 01:12:15,745 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 20:13:19] 2025-11-27 01:12:15,745 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 20:13:19] 2025-11-27 01:12:15,745 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 20:13:19] 2025-11-27 01:12:15,745 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 20:13:19] 2025-11-27 01:12:15,745 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 20:13:19] 2025-11-27 01:12:15,745 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 20:13:19] 2025-11-27 01:12:15,746 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 20:13:19] 2025-11-27 01:12:15,746 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 20:13:19] 2025-11-27 01:12:15,746 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 20:13:19] 2025-11-27 01:12:15,746 | INFO     | job 6896990420 has completed (purged errors)
[2025-11-26 20:13:19] 2025-11-27 01:12:15,746 | INFO     | overall cleanup function is called
[2025-11-26 20:13:19] 2025-11-27 01:12:16,787 | INFO     | --- collectZombieJob: --- 10, [3636874]
[2025-11-26 20:13:19] 2025-11-27 01:12:16,788 | INFO     | zombie collector waiting for pid 3636874
[2025-11-26 20:13:19] 2025-11-27 01:12:16,788 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 20:13:19] 2025-11-27 01:12:16,788 | INFO     | collected zombie processes
[2025-11-26 20:13:19] 2025-11-27 01:12:16,788 | INFO     | will attempt to kill all subprocesses of pid=3636874
[2025-11-26 20:13:19] 2025-11-27 01:12:17,960 | INFO     | process IDs to be killed: [3636874] (in reverse order)
[2025-11-26 20:13:19] 2025-11-27 01:12:18,408 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 20:13:19] 2025-11-27 01:12:18,408 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 20:13:19] 2025-11-27 01:12:18,440 | INFO     | did not find any defunct processes belonging to 3636874
[2025-11-26 20:13:19] 2025-11-27 01:12:18,476 | INFO     | did not find any defunct processes belonging to 3636874
[2025-11-26 20:13:19] 2025-11-27 01:12:18,488 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 20:13:19] 2025-11-27 01:12:18,488 | INFO     | ready for new job
[2025-11-26 20:13:19] 2025-11-27 01:12:18,488 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 20:13:19] 2025-11-27 01:12:18,497 | INFO     | ***************************************
[2025-11-26 20:13:19] 2025-11-27 01:12:18,497 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 20:13:19] 2025-11-27 01:12:18,497 | INFO     | ***************************************
[2025-11-26 20:13:19] 2025-11-27 01:12:18,497 | INFO     | 
[2025-11-26 20:13:19] 2025-11-27 01:12:18,504 | INFO     | architecture information:
[2025-11-26 20:13:19] 2025-11-27 01:12:18,509 | INFO     | executing command: cat /etc/os-release
[2025-11-26 20:13:19] 2025-11-27 01:12:18,548 | INFO     | cat /etc/os-release:
[2025-11-26 20:13:19] NAME="CentOS Linux"
[2025-11-26 20:13:19] VERSION="7 (Core)"
[2025-11-26 20:13:19] ID="centos"
[2025-11-26 20:13:19] ID_LIKE="rhel fedora"
[2025-11-26 20:13:19] VERSION_ID="7"
[2025-11-26 20:13:19] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 20:13:19] ANSI_COLOR="0;31"
[2025-11-26 20:13:19] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 20:13:19] HOME_URL="https://www.centos.org/"
[2025-11-26 20:13:19] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 20:13:19] 
[2025-11-26 20:13:19] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 20:13:19] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 20:13:19] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 20:13:19] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 20:13:19] 
[2025-11-26 20:13:19] 2025-11-27 01:12:18,548 | INFO     | ***************************************
[2025-11-26 20:13:19] 2025-11-27 01:12:19,054 | INFO     | executing command: df -mP /tmp/boinchome/slots/3
[2025-11-26 20:13:19] 2025-11-27 01:12:19,106 | INFO     | sufficient remaining disk space (72816263168 B)
[2025-11-26 20:13:19] 2025-11-27 01:12:19,106 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 20:13:19] 2025-11-27 01:12:19,107 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 20:13:19] 2025-11-27 01:12:19,107 | INFO     | update_server=False
[2025-11-26 20:13:19] 2025-11-27 01:12:19,107 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 20:13:19] 2025-11-27 01:12:19,107 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 20:13:19] 2025-11-27 01:12:19,310 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 20:13:19] 2025-11-27 01:12:19,656 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 20:13:19] 2025-11-27 01:12:19,656 | INFO     | aborting loop
[2025-11-26 20:13:19] 2025-11-27 01:12:19,883 | INFO     | all data control threads have been joined
[2025-11-26 20:13:19] 2025-11-27 01:12:20,113 | INFO     | [job] retrieve thread has finished
[2025-11-26 20:13:19] 2025-11-27 01:12:20,297 | INFO     | all payload control threads have been joined
[2025-11-26 20:13:19] 2025-11-27 01:12:20,372 | INFO     | all job control threads have been joined
[2025-11-26 20:13:19] 2025-11-27 01:12:20,529 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 20:13:19] 2025-11-27 01:12:20,570 | INFO     | [payload] validate_post thread has finished
[2025-11-26 20:13:19] 2025-11-27 01:12:20,664 | INFO     | [job] job monitor thread has finished
[2025-11-26 20:13:19] 2025-11-27 01:12:20,718 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 20:13:19] 2025-11-27 01:12:20,787 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 20:13:19] 2025-11-27 01:12:20,891 | INFO     | [data] control thread has finished
[2025-11-26 20:13:19] 2025-11-27 01:12:21,134 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 20:13:19] 2025-11-27 01:12:21,232 | INFO     | [payload] failed_post thread has finished
[2025-11-26 20:13:19] 2025-11-27 01:12:21,321 | INFO     | [data] copytool_out thread has finished
[2025-11-26 20:13:19] 2025-11-27 01:12:21,355 | INFO     | [payload] control thread has finished
[2025-11-26 20:13:19] 2025-11-27 01:12:21,379 | INFO     | [job] control thread has finished
[2025-11-26 20:13:19] 2025-11-27 01:12:21,400 | INFO     | [job] validate thread has finished
[2025-11-26 20:13:19] 2025-11-27 01:12:21,400 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 20:13:19] 2025-11-27 01:12:21,584 | INFO     | [data] copytool_in thread has finished
[2025-11-26 20:13:19] 2025-11-27 01:12:21,724 | INFO     | [job] queue monitor thread has finished
[2025-11-26 20:13:19] 2025-11-27 01:12:23,122 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 20:13:19] 2025-11-27 01:12:48,609 | INFO     | PID=3617240 has CPU usage=4.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-26 20:13:19] 2025-11-27 01:12:48,610 | INFO     | .. there are 41 such processes running
[2025-11-26 20:13:19] 2025-11-27 01:12:48,610 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 20:13:19] 2025-11-27 01:12:48,610 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 20:13:19] 2025-11-27 01:12:48,610 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 20:13:19] 2025-11-27 01:13:11,569 | INFO     | [monitor] cgroup control has ended
[2025-11-26 20:13:19] 2025-11-27 01:13:13,133 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140672654579520)>', '<ExcThread(monitor, started 140672149464832)>']
[2025-11-26 20:13:19] 2025-11-27 01:13:13,857 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 20:13:19] 2025-11-27 01:13:13,858 | INFO     | [monitor] control thread has ended
[2025-11-26 20:13:19] 2025-11-27 01:13:18,158 | INFO     | all workflow threads have been joined
[2025-11-26 20:13:19] 2025-11-27 01:13:18,159 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 20:13:19] 2025-11-27 01:13:18,159 | INFO     | traces error code: 0
[2025-11-26 20:13:19] 2025-11-27 01:13:18,159 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 20:13:19] 2025-11-27 01:13:18,463 [wrapper] ==== pilot stdout END ====
[2025-11-26 20:13:19] 2025-11-27 01:13:18,484 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 20:13:19] 2025-11-27 01:13:18,507 [wrapper] pilotpid: 3617240
[2025-11-26 20:13:19] 2025-11-27 01:13:18,538 [wrapper] Pilot exit status: 0
[2025-11-26 20:13:19] 2025-11-27 01:13:18,668 [wrapper] pandaids: 6896990420
[2025-11-26 20:13:19] 2025-11-27 01:13:18,766 [wrapper] cleanup supervisor_pilot 4051735 3617241
[2025-11-26 20:13:19] 2025-11-27 01:13:18,770 [wrapper] Test setup, not cleaning
[2025-11-26 20:13:19] 2025-11-27 01:13:18,772 [wrapper] apfmon messages muted
[2025-11-26 20:13:19] 2025-11-27 01:13:18,775 [wrapper] ==== wrapper stdout END ====
[2025-11-26 20:13:19] 2025-11-27 01:13:18,777 [wrapper] ==== wrapper stderr END ====
[2025-11-26 20:13:19]  *** Error codes and diagnostics ***
[2025-11-26 20:13:19]     "exeErrorCode": 0,
[2025-11-26 20:13:19]     "exeErrorDiag": "",
[2025-11-26 20:13:19]     "pilotErrorCode": 0,
[2025-11-26 20:13:19]     "pilotErrorDiag": "",
[2025-11-26 20:13:19]  *** Listing of results directory ***
[2025-11-26 20:13:19] total 1319080
[2025-11-26 20:13:19] -rw-r--r--. 1 boincer umatlas    576529 Nov 25 11:48 pilot3.tar.gz
[2025-11-26 20:13:19] -rw-r--r--. 1 boincer umatlas      5112 Nov 25 11:55 queuedata.json
[2025-11-26 20:13:19] -rwx------. 1 boincer umatlas     36292 Nov 25 11:56 runpilot2-wrapper.sh
[2025-11-26 20:13:19] -rw-r--r--. 1 boincer umatlas       100 Nov 26 00:02 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 20:13:19] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 26 00:02 run_atlas
[2025-11-26 20:13:19] -rw-r--r--. 1 boincer umatlas       105 Nov 26 00:02 job.xml
[2025-11-26 20:13:19] -rw-r--r--. 2 boincer umatlas 408829385 Nov 26 00:02 EVNT.47483658._002173.pool.root.1
[2025-11-26 20:13:19] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 00:02 start_atlas.sh
[2025-11-26 20:13:19] drwxrwx--x. 2 boincer umatlas      4096 Nov 26 00:02 shared
[2025-11-26 20:13:19] -rw-r--r--. 2 boincer umatlas    590110 Nov 26 00:02 input.tar.gz
[2025-11-26 20:13:19] -rw-r--r--. 1 boincer umatlas         0 Nov 26 00:02 boinc_lockfile
[2025-11-26 20:13:19] -rw-r--r--. 1 boincer umatlas      2786 Nov 26 00:02 pandaJob.out
[2025-11-26 20:13:19] -rw-------. 1 boincer umatlas        57 Nov 26 00:02 setup.sh.local
[2025-11-26 20:13:19] -rw-------. 1 boincer umatlas    991877 Nov 26 00:03 agis_schedconf.cvmfs.json
[2025-11-26 20:13:19] drwx------. 5 boincer umatlas      4096 Nov 26 00:03 pilot3
[2025-11-26 20:13:19] -rw-r--r--. 1 boincer umatlas       533 Nov 26 19:59 boinc_task_state.xml
[2025-11-26 20:13:19] -rw-r--r--. 1 boincer umatlas      6709 Nov 26 20:11 init_data.xml
[2025-11-26 20:13:19] -rw-------. 1 boincer umatlas 913371103 Nov 26 20:11 HITS.47556161._001567.pool.root.1
[2025-11-26 20:13:19] -rw-------. 1 boincer umatlas      1068 Nov 26 20:11 memory_monitor_summary.json
[2025-11-26 20:13:19] -rw-------. 1 boincer umatlas   1516240 Nov 26 20:11 agis_ddmendpoints.agis.ALL.json
[2025-11-26 20:13:19] -rw-------. 1 boincer umatlas   2450977 Nov 26 20:11 log.47556161._001567.job.log.tgz.1
[2025-11-26 20:13:19] -rw-------. 1 boincer umatlas        95 Nov 26 20:12 pilot_heartbeat.json
[2025-11-26 20:13:19] -rw-------. 1 boincer umatlas      8636 Nov 26 20:12 heartbeat.json
[2025-11-26 20:13:19] -rw-r--r--. 1 boincer umatlas        29 Nov 26 20:13 wrapper_checkpoint.txt
[2025-11-26 20:13:19] -rw-r--r--. 1 boincer umatlas      8192 Nov 26 20:13 boinc_mmap_file
[2025-11-26 20:13:19] -rw-------. 1 boincer umatlas      4824 Nov 26 20:13 pilotlog.txt
[2025-11-26 20:13:19] -rw-------. 1 boincer umatlas   9857208 Nov 26 20:13 log.47556161._001567.job.log.1
[2025-11-26 20:13:19] -rw-------. 1 boincer umatlas       353 Nov 26 20:13 output.list
[2025-11-26 20:13:19] -rw-r--r--. 1 boincer umatlas       620 Nov 26 20:13 runtime_log
[2025-11-26 20:13:19] -rw-------. 1 boincer umatlas  12328960 Nov 26 20:13 result.tar.gz
[2025-11-26 20:13:19] -rw-r--r--. 1 boincer umatlas      9333 Nov 26 20:13 runtime_log.err
[2025-11-26 20:13:19] -rw-------. 1 boincer umatlas       662 Nov 26 20:13 OAeMDmSWBi8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm9SMKDmkHsz3m.diag
[2025-11-26 20:13:19] -rw-r--r--. 1 boincer umatlas     21380 Nov 26 20:13 stderr.txt
[2025-11-26 20:13:19] HITS file was successfully produced:
[2025-11-26 20:13:19] -rw-------. 1 boincer umatlas 913371103 Nov 26 20:11 shared/HITS.pool.root.1
[2025-11-26 20:13:19]  *** Contents of shared directory: ***
[2025-11-26 20:13:19] total 1303856
[2025-11-26 20:13:19] -rw-r--r--. 2 boincer umatlas 408829385 Nov 26 00:02 ATLAS.root_0
[2025-11-26 20:13:19] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 00:02 start_atlas.sh
[2025-11-26 20:13:19] -rw-r--r--. 2 boincer umatlas    590110 Nov 26 00:02 input.tar.gz
[2025-11-26 20:13:19] -rw-------. 1 boincer umatlas 913371103 Nov 26 20:11 HITS.pool.root.1
[2025-11-26 20:13:19] -rw-------. 1 boincer umatlas  12328960 Nov 26 20:13 result.tar.gz
20:13:20 (3606783): run_atlas exited; CPU time 300711.576791
20:13:20 (3606783): called boinc_finish(0)

</stderr_txt>
]]>

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