Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
21:39:05 (1332037): wrapper (7.7.26015): starting
21:39:05 (1332037): wrapper: running run_atlas (--nthreads 8)
[2025-11-25 21:39:06] Arguments: --nthreads 8
[2025-11-25 21:39:06] Threads: 8
[2025-11-25 21:39:06] Checking for CVMFS
[2025-11-25 21:39:06] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 21:39:06] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 21:39:06] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 21:39:06] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 21:39:06] 2.13.3.0 9358 27766 233560 153305 3 307 28476619 32935936 26062 16776704 0 145972280 99.787 79268314 33272 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-25 21:39:06] CVMFS is ok
[2025-11-25 21:39:06] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 21:39:06] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 21:39:06] Further information can be found at the LHC@home message board.
[2025-11-25 21:39:06] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 21:39:06] Checking for apptainer binary...
[2025-11-25 21:39:06] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 21:39:06] Running /usr/bin/apptainer --version
[2025-11-25 21:39:06] apptainer version 1.4.4-1.el9
[2025-11-25 21:39:06] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 21:39:07] c-6-6.aglt2.org
[2025-11-25 21:39:07] apptainer works
[2025-11-25 21:39:07] Set ATHENA_PROC_NUMBER=8
[2025-11-25 21:39:07] Set ATHENA_CORE_NUMBER=8
[2025-11-25 21:39:07] Starting ATLAS job with PandaID=6897372809
[2025-11-25 21:39:07] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 19:34:09]  *** The last 200 lines of the pilot log: ***
[2025-11-26 19:34:10] 2025-11-27 00:33:35,997 | INFO     | sum of deviations: 3409651211052.638
[2025-11-26 19:34:10] 2025-11-27 00:33:35,997 | INFO     | mean x: 1764164179.139319
[2025-11-26 19:34:10] 2025-11-27 00:33:35,998 | INFO     | mean y: 2969265.202012384
[2025-11-26 19:34:10] 2025-11-27 00:33:35,998 | INFO     | intersect: -8991535371.881735
[2025-11-26 19:34:10] 2025-11-27 00:33:36,000 | INFO     | chi2: 7.178168104883631
[2025-11-26 19:34:10] 2025-11-27 00:33:36,001 | INFO     | sum of square deviations: 661028277699.871
[2025-11-26 19:34:10] 2025-11-27 00:33:36,044 | INFO     | sum of deviations: 3856777273102.8086
[2025-11-26 19:34:10] 2025-11-27 00:33:36,045 | INFO     | mean x: 1764164026.6418025
[2025-11-26 19:34:10] 2025-11-27 00:33:36,045 | INFO     | mean y: 2978083.5462315464
[2025-11-26 19:34:10] 2025-11-27 00:33:36,046 | INFO     | intersect: -10290057711.613625
[2025-11-26 19:34:10] 2025-11-27 00:33:36,047 | INFO     | chi2: 4.036172281949314
[2025-11-26 19:34:10] 2025-11-27 00:33:36,048 | INFO     | current chi2=4.036172281949314 (change=43.77155531920011 %)
[2025-11-26 19:34:10] 2025-11-27 00:33:36,049 | INFO     | sum of square deviations: 653354158637.5906
[2025-11-26 19:34:10] 2025-11-27 00:33:36,092 | INFO     | sum of deviations: 4095699399897.2197
[2025-11-26 19:34:10] 2025-11-27 00:33:36,093 | INFO     | mean x: 1764163874.1435258
[2025-11-26 19:34:10] 2025-11-27 00:33:36,093 | INFO     | mean y: 2982825.569422777
[2025-11-26 19:34:10] 2025-11-27 00:33:36,093 | INFO     | intersect: -11056080356.513882
[2025-11-26 19:34:10] 2025-11-27 00:33:36,095 | INFO     | chi2: 2.7384028651505217
[2025-11-26 19:34:10] 2025-11-27 00:33:36,095 | INFO     | current chi2=2.7384028651505217 (change=32.15346933040282 %)
[2025-11-26 19:34:10] 2025-11-27 00:33:36,097 | INFO     | sum of square deviations: 645739355549.4554
[2025-11-26 19:34:10] 2025-11-27 00:33:36,138 | INFO     | sum of deviations: 4094525131268.246
[2025-11-26 19:34:10] 2025-11-27 00:33:36,138 | INFO     | monitor loop #5291: job 0:6897372809 is in state 'finished'
[2025-11-26 19:34:10] 2025-11-27 00:33:36,138 | INFO     | mean x: 1764163721.64213
[2025-11-26 19:34:10] 2025-11-27 00:33:36,139 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 19:34:10] 2025-11-27 00:33:36,139 | INFO     | mean y: 2982800.4228660925
[2025-11-26 19:34:10] 2025-11-27 00:33:36,139 | INFO     | intersect: -11183283967.829264
[2025-11-26 19:34:10] 2025-11-27 00:33:36,141 | INFO     | chi2: 2.687092366716896
[2025-11-26 19:34:10] 2025-11-27 00:33:36,141 | INFO     | current chi2=2.687092366716896 (change=1.8737381225609064 %)
[2025-11-26 19:34:10] 2025-11-27 00:33:36,141 | INFO     | right removable region: 1276
[2025-11-26 19:34:10] 2025-11-27 00:33:36,143 | INFO     | sum of square deviations: 661027773839.871
[2025-11-26 19:34:10] 2025-11-27 00:33:36,187 | INFO     | sum of deviations: 3013192310847.58
[2025-11-26 19:34:10] 2025-11-27 00:33:36,187 | INFO     | mean x: 1764164331.6418025
[2025-11-26 19:34:10] 2025-11-27 00:33:36,187 | INFO     | mean y: 2977077.955710956
[2025-11-26 19:34:10] 2025-11-27 00:33:36,187 | INFO     | intersect: -8038691683.245756
[2025-11-26 19:34:10] 2025-11-27 00:33:36,189 | INFO     | chi2: 4.865799874370899
[2025-11-26 19:34:10] 2025-11-27 00:33:36,189 | INFO     | current chi2=4.865799874370899 (change=32.21390467213388 %)
[2025-11-26 19:34:10] 2025-11-27 00:33:36,191 | INFO     | sum of square deviations: 653353464946.1621
[2025-11-26 19:34:10] 2025-11-27 00:33:36,247 | INFO     | sum of deviations: 2925879812364.317
[2025-11-26 19:34:10] 2025-11-27 00:33:36,248 | INFO     | mean x: 1764164484.1419656
[2025-11-26 19:34:10] 2025-11-27 00:33:36,248 | INFO     | mean y: 2978812.5257410295
[2025-11-26 19:34:10] 2025-11-27 00:33:36,248 | INFO     | intersect: -7897389865.042114
[2025-11-26 19:34:10] 2025-11-27 00:33:36,250 | INFO     | chi2: 4.825359490109946
[2025-11-26 19:34:10] 2025-11-27 00:33:36,250 | INFO     | current chi2=4.825359490109946 (change=0.8311148280873685 %)
[2025-11-26 19:34:10] 2025-11-27 00:33:36,250 | INFO     | left removable region: 20
[2025-11-26 19:34:10] 2025-11-27 00:33:36,252 | INFO     | sum of square deviations: 614403723547.4897
[2025-11-26 19:34:10] 2025-11-27 00:33:36,296 | INFO     | sum of deviations: 3493904813262.3477
[2025-11-26 19:34:10] 2025-11-27 00:33:36,297 | INFO     | mean x: 1764164301.142516
[2025-11-26 19:34:10] 2025-11-27 00:33:36,297 | INFO     | mean y: 2994753.4840764333
[2025-11-26 19:34:10] 2025-11-27 00:33:36,297 | INFO     | intersect: -10029207049.523088
[2025-11-26 19:34:10] 2025-11-27 00:33:36,299 | INFO     | chi2: 0.3106028227792351
[2025-11-26 19:34:10] 2025-11-27 00:33:36,299 | INFO     | current memory leak: 5.69 B/s (using 1256 data points, chi2=0.31)
[2025-11-26 19:34:10] 2025-11-27 00:33:36,301 | INFO     | could have reported an average CPU frequency of 2600 MHz (47 samples)
[2025-11-26 19:34:10] 2025-11-27 00:33:36,302 | INFO     | ..............................
[2025-11-26 19:34:10] 2025-11-27 00:33:36,302 | INFO     | . Timing measurements:
[2025-11-26 19:34:10] 2025-11-27 00:33:36,302 | INFO     | . get job = 0 s
[2025-11-26 19:34:10] 2025-11-27 00:33:36,302 | INFO     | . initial setup = 3 s
[2025-11-26 19:34:10] 2025-11-27 00:33:36,302 | INFO     | . payload setup = 12 s
[2025-11-26 19:34:10] 2025-11-27 00:33:36,302 | INFO     | . stage-in = 0 s
[2025-11-26 19:34:10] 2025-11-27 00:33:36,302 | INFO     | . payload execution = 78804 s
[2025-11-26 19:34:10] 2025-11-27 00:33:36,303 | INFO     | . stage-out = 4 s
[2025-11-26 19:34:10] 2025-11-27 00:33:36,303 | INFO     | . log creation = 1 s
[2025-11-26 19:34:10] 2025-11-27 00:33:36,303 | INFO     | ..............................
[2025-11-26 19:34:10] 2025-11-27 00:33:36,694 | INFO     | 
[2025-11-26 19:34:10] 2025-11-27 00:33:36,694 | INFO     | job summary report
[2025-11-26 19:34:10] 2025-11-27 00:33:36,695 | INFO     | --------------------------------------------------
[2025-11-26 19:34:10] 2025-11-27 00:33:36,695 | INFO     | PanDA job id: 6897372809
[2025-11-26 19:34:10] 2025-11-27 00:33:36,695 | INFO     | task id: 47556173
[2025-11-26 19:34:10] 2025-11-27 00:33:36,695 | INFO     | errors: (none)
[2025-11-26 19:34:10] 2025-11-27 00:33:36,695 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 19:34:10] 2025-11-27 00:33:36,695 | INFO     | pilot state: finished 
[2025-11-26 19:34:10] 2025-11-27 00:33:36,695 | INFO     | transexitcode: 0
[2025-11-26 19:34:10] 2025-11-27 00:33:36,695 | INFO     | exeerrorcode: 0
[2025-11-26 19:34:10] 2025-11-27 00:33:36,695 | INFO     | exeerrordiag: 
[2025-11-26 19:34:10] 2025-11-27 00:33:36,696 | INFO     | exitcode: 0
[2025-11-26 19:34:10] 2025-11-27 00:33:36,696 | INFO     | exitmsg: OK
[2025-11-26 19:34:10] 2025-11-27 00:33:36,696 | INFO     | cpuconsumptiontime: 306756 s
[2025-11-26 19:34:10] 2025-11-27 00:33:36,696 | INFO     | nevents: 1000
[2025-11-26 19:34:10] 2025-11-27 00:33:36,696 | INFO     | neventsw: 0
[2025-11-26 19:34:10] 2025-11-27 00:33:36,696 | INFO     | pid: 1345727
[2025-11-26 19:34:10] 2025-11-27 00:33:36,696 | INFO     | pgrp: 1345727
[2025-11-26 19:34:10] 2025-11-27 00:33:36,696 | INFO     | corecount: 8
[2025-11-26 19:34:10] 2025-11-27 00:33:36,696 | INFO     | event service: False
[2025-11-26 19:34:10] 2025-11-27 00:33:36,697 | INFO     | sizes: {0: 2284092, 1: 2284291, 8: 2284553, 12: 2284581, 78820: 2348168, 78821: 2348167, 78825: 2357345, 78826: 2357401, 78835: 2357647}
[2025-11-26 19:34:10] 2025-11-27 00:33:36,697 | INFO     | --------------------------------------------------
[2025-11-26 19:34:10] 2025-11-27 00:33:36,697 | INFO     | 
[2025-11-26 19:34:10] 2025-11-27 00:33:36,697 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-11-26 19:34:10] 2025-11-27 00:33:36,719 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 19:34:10] 2025-11-27 00:33:36,720 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 19:34:10] 2025-11-27 00:33:36,720 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 19:34:10] 2025-11-27 00:33:36,720 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 19:34:10] 2025-11-27 00:33:36,720 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 19:34:10] 2025-11-27 00:33:36,720 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 19:34:10] 2025-11-27 00:33:36,720 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 19:34:10] 2025-11-27 00:33:36,721 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 19:34:10] 2025-11-27 00:33:36,721 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 19:34:10] 2025-11-27 00:33:36,721 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 19:34:10] 2025-11-27 00:33:36,728 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 19:34:10] 2025-11-27 00:33:36,728 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 19:34:10] 2025-11-27 00:33:36,728 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 19:34:10] 2025-11-27 00:33:36,728 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 19:34:10] 2025-11-27 00:33:36,728 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 19:34:10] 2025-11-27 00:33:36,728 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 19:34:10] 2025-11-27 00:33:36,728 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 19:34:10] 2025-11-27 00:33:36,729 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 19:34:10] 2025-11-27 00:33:36,729 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 19:34:10] 2025-11-27 00:33:36,729 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 19:34:10] 2025-11-27 00:33:36,729 | INFO     | job 6897372809 has completed (purged errors)
[2025-11-26 19:34:10] 2025-11-27 00:33:36,729 | INFO     | overall cleanup function is called
[2025-11-26 19:34:10] 2025-11-27 00:33:37,004 | INFO     | PID=1336631 has CPU usage=19.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-11-26 19:34:10] 2025-11-27 00:33:37,004 | INFO     | .. there are 42 such processes running
[2025-11-26 19:34:10] 2025-11-27 00:33:37,753 | INFO     | --- collectZombieJob: --- 10, [1345727]
[2025-11-26 19:34:10] 2025-11-27 00:33:37,753 | INFO     | zombie collector waiting for pid 1345727
[2025-11-26 19:34:10] 2025-11-27 00:33:37,753 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 19:34:10] 2025-11-27 00:33:37,753 | INFO     | collected zombie processes
[2025-11-26 19:34:10] 2025-11-27 00:33:37,753 | INFO     | will attempt to kill all subprocesses of pid=1345727
[2025-11-26 19:34:10] 2025-11-27 00:33:38,345 | INFO     | process IDs to be killed: [1345727] (in reverse order)
[2025-11-26 19:34:10] 2025-11-27 00:33:38,479 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 19:34:10] 2025-11-27 00:33:38,479 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 19:34:10] 2025-11-27 00:33:38,497 | INFO     | did not find any defunct processes belonging to 1345727
[2025-11-26 19:34:10] 2025-11-27 00:33:38,509 | INFO     | did not find any defunct processes belonging to 1345727
[2025-11-26 19:34:10] 2025-11-27 00:33:38,510 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 19:34:10] 2025-11-27 00:33:38,511 | INFO     | ready for new job
[2025-11-26 19:34:10] 2025-11-27 00:33:38,511 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 19:34:10] 2025-11-27 00:33:38,515 | INFO     | ***************************************
[2025-11-26 19:34:10] 2025-11-27 00:33:38,516 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 19:34:10] 2025-11-27 00:33:38,516 | INFO     | ***************************************
[2025-11-26 19:34:10] 2025-11-27 00:33:38,516 | INFO     | 
[2025-11-26 19:34:10] 2025-11-27 00:33:38,517 | INFO     | architecture information:
[2025-11-26 19:34:10] 2025-11-27 00:33:38,518 | INFO     | executing command: cat /etc/os-release
[2025-11-26 19:34:10] 2025-11-27 00:33:38,551 | INFO     | cat /etc/os-release:
[2025-11-26 19:34:10] NAME="CentOS Linux"
[2025-11-26 19:34:10] VERSION="7 (Core)"
[2025-11-26 19:34:10] ID="centos"
[2025-11-26 19:34:10] ID_LIKE="rhel fedora"
[2025-11-26 19:34:10] VERSION_ID="7"
[2025-11-26 19:34:10] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 19:34:10] ANSI_COLOR="0;31"
[2025-11-26 19:34:10] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 19:34:10] HOME_URL="https://www.centos.org/"
[2025-11-26 19:34:10] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 19:34:10] 
[2025-11-26 19:34:10] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 19:34:10] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 19:34:10] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 19:34:10] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 19:34:10] 
[2025-11-26 19:34:10] 2025-11-27 00:33:38,551 | INFO     | ***************************************
[2025-11-26 19:34:10] 2025-11-27 00:33:39,056 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-11-26 19:34:10] 2025-11-27 00:33:39,093 | INFO     | sufficient remaining disk space (71660732416 B)
[2025-11-26 19:34:10] 2025-11-27 00:33:39,093 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 19:34:10] 2025-11-27 00:33:39,094 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 19:34:10] 2025-11-27 00:33:39,094 | INFO     | update_server=False
[2025-11-26 19:34:10] 2025-11-27 00:33:39,094 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 19:34:10] 2025-11-27 00:33:39,615 | INFO     | all payload control threads have been joined
[2025-11-26 19:34:10] 2025-11-27 00:33:39,656 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 19:34:10] 2025-11-27 00:33:39,656 | INFO     | aborting loop
[2025-11-26 19:34:10] 2025-11-27 00:33:39,717 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 19:34:10] 2025-11-27 00:33:39,978 | INFO     | [monitor] cgroup control has ended
[2025-11-26 19:34:10] 2025-11-27 00:33:39,994 | INFO     | all data control threads have been joined
[2025-11-26 19:34:10] 2025-11-27 00:33:40,082 | INFO     | all job control threads have been joined
[2025-11-26 19:34:10] 2025-11-27 00:33:40,099 | INFO     | [job] retrieve thread has finished
[2025-11-26 19:34:10] 2025-11-27 00:33:40,234 | INFO     | [job] validate thread has finished
[2025-11-26 19:34:10] 2025-11-27 00:33:40,331 | INFO     | [data] copytool_in thread has finished
[2025-11-26 19:34:10] 2025-11-27 00:33:40,607 | INFO     | [payload] failed_post thread has finished
[2025-11-26 19:34:10] 2025-11-27 00:33:40,620 | INFO     | [payload] control thread has finished
[2025-11-26 19:34:10] 2025-11-27 00:33:40,621 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 19:34:10] 2025-11-27 00:33:40,661 | INFO     | [job] job monitor thread has finished
[2025-11-26 19:34:10] 2025-11-27 00:33:40,715 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 19:34:10] 2025-11-27 00:33:40,715 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 19:34:10] 2025-11-27 00:33:40,944 | INFO     | [payload] validate_post thread has finished
[2025-11-26 19:34:10] 2025-11-27 00:33:41,000 | INFO     | [data] control thread has finished
[2025-11-26 19:34:10] 2025-11-27 00:33:41,087 | INFO     | [job] control thread has finished
[2025-11-26 19:34:10] 2025-11-27 00:33:41,446 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 19:34:10] 2025-11-27 00:33:41,514 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 19:34:10] 2025-11-27 00:33:41,722 | INFO     | [data] copytool_out thread has finished
[2025-11-26 19:34:10] 2025-11-27 00:33:41,821 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 19:34:10] 2025-11-27 00:33:42,451 | INFO     | [job] queue monitor thread has finished
[2025-11-26 19:34:10] 2025-11-27 00:33:45,828 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 19:34:10] 2025-11-27 00:33:46,333 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140125921105728)>', '<ExcThread(monitor, started 140125405157120)>']
[2025-11-26 19:34:10] 2025-11-27 00:33:51,360 | INFO     | all workflow threads have been joined
[2025-11-26 19:34:10] 2025-11-27 00:33:51,360 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 19:34:10] 2025-11-27 00:33:51,360 | INFO     | traces error code: 0
[2025-11-26 19:34:10] 2025-11-27 00:33:51,360 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 19:34:10] 2025-11-27 00:34:09,665 | INFO     | PID=1336631 has CPU usage=3.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-26 19:34:10] 2025-11-27 00:34:09,665 | INFO     | .. there are 42 such processes running
[2025-11-26 19:34:10] 2025-11-27 00:34:09,666 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 19:34:10] 2025-11-27 00:34:09,666 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 19:34:10] 2025-11-27 00:34:09,666 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 19:34:10] 2025-11-27 00:34:09,666 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 19:34:10] 2025-11-27 00:34:09,666 | INFO     | [monitor] control thread has ended
[2025-11-26 19:34:10] 2025-11-27 00:34:09,792 [wrapper] ==== pilot stdout END ====
[2025-11-26 19:34:10] 2025-11-27 00:34:09,795 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 19:34:10] 2025-11-27 00:34:09,799 [wrapper] pilotpid: 1336631
[2025-11-26 19:34:10] 2025-11-27 00:34:09,802 [wrapper] Pilot exit status: 0
[2025-11-26 19:34:10] 2025-11-27 00:34:09,813 [wrapper] pandaids: 6897372809
[2025-11-26 19:34:10] 2025-11-27 00:34:09,897 [wrapper] cleanup supervisor_pilot 2096464 1336650
[2025-11-26 19:34:10] 2025-11-27 00:34:09,900 [wrapper] Test setup, not cleaning
[2025-11-26 19:34:10] 2025-11-27 00:34:09,905 [wrapper] apfmon messages muted
[2025-11-26 19:34:10] 2025-11-27 00:34:09,908 [wrapper] ==== wrapper stdout END ====
[2025-11-26 19:34:10] 2025-11-27 00:34:09,911 [wrapper] ==== wrapper stderr END ====
[2025-11-26 19:34:10]  *** Error codes and diagnostics ***
[2025-11-26 19:34:10]     "exeErrorCode": 0,
[2025-11-26 19:34:10]     "exeErrorDiag": "",
[2025-11-26 19:34:10]     "pilotErrorCode": 0,
[2025-11-26 19:34:10]     "pilotErrorDiag": "",
[2025-11-26 19:34:10]  *** Listing of results directory ***
[2025-11-26 19:34:10] total 1342536
[2025-11-26 19:34:10] -rw-r--r--. 1 boincer umatlas    576529 Nov 25 11:48 pilot3.tar.gz
[2025-11-26 19:34:10] -rw-r--r--. 1 boincer umatlas      5112 Nov 25 11:55 queuedata.json
[2025-11-26 19:34:10] -rwx------. 1 boincer umatlas     36292 Nov 25 11:56 runpilot2-wrapper.sh
[2025-11-26 19:34:10] -rw-r--r--. 1 boincer umatlas       100 Nov 25 21:39 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 19:34:10] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 25 21:39 run_atlas
[2025-11-26 19:34:10] -rw-r--r--. 1 boincer umatlas       105 Nov 25 21:39 job.xml
[2025-11-26 19:34:10] -rw-r--r--. 2 boincer umatlas 410554812 Nov 25 21:39 EVNT.47483658._003092.pool.root.1
[2025-11-26 19:34:10] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 21:39 start_atlas.sh
[2025-11-26 19:34:10] drwxrwx--x. 2 boincer umatlas      4096 Nov 25 21:39 shared
[2025-11-26 19:34:10] -rw-r--r--. 2 boincer umatlas    590108 Nov 25 21:39 input.tar.gz
[2025-11-26 19:34:10] -rw-r--r--. 1 boincer umatlas         0 Nov 25 21:39 boinc_lockfile
[2025-11-26 19:34:10] -rw-r--r--. 1 boincer umatlas      2785 Nov 25 21:39 pandaJob.out
[2025-11-26 19:34:10] -rw-------. 1 boincer umatlas        57 Nov 25 21:39 setup.sh.local
[2025-11-26 19:34:10] -rw-------. 1 boincer umatlas    991877 Nov 25 21:39 agis_schedconf.cvmfs.json
[2025-11-26 19:34:10] drwx------. 5 boincer umatlas      4096 Nov 25 21:39 pilot3
[2025-11-26 19:34:10] -rw-r--r--. 1 boincer umatlas       533 Nov 26 19:20 boinc_task_state.xml
[2025-11-26 19:34:10] -rw-r--r--. 1 boincer umatlas      6659 Nov 26 19:28 init_data.xml
[2025-11-26 19:34:10] -rw-------. 1 boincer umatlas 934150168 Nov 26 19:32 HITS.47556173._000750.pool.root.1
[2025-11-26 19:34:10] -rw-------. 1 boincer umatlas      1059 Nov 26 19:33 memory_monitor_summary.json
[2025-11-26 19:34:10] -rw-------. 1 boincer umatlas   1516240 Nov 26 19:33 agis_ddmendpoints.agis.ALL.json
[2025-11-26 19:34:10] -rw-------. 1 boincer umatlas   2402908 Nov 26 19:33 log.47556173._000750.job.log.tgz.1
[2025-11-26 19:34:10] -rw-------. 1 boincer umatlas      8624 Nov 26 19:33 heartbeat.json
[2025-11-26 19:34:10] -rw-r--r--. 1 boincer umatlas      8192 Nov 26 19:34 boinc_mmap_file
[2025-11-26 19:34:10] -rw-r--r--. 1 boincer umatlas        29 Nov 26 19:34 wrapper_checkpoint.txt
[2025-11-26 19:34:10] -rw-------. 1 boincer umatlas       823 Nov 26 19:34 pilotlog.txt
[2025-11-26 19:34:10] -rw-------. 1 boincer umatlas        95 Nov 26 19:34 pilot_heartbeat.json
[2025-11-26 19:34:10] -rw-------. 1 boincer umatlas  10662257 Nov 26 19:34 log.47556173._000750.job.log.1
[2025-11-26 19:34:10] -rw-------. 1 boincer umatlas       353 Nov 26 19:34 output.list
[2025-11-26 19:34:10] -rw-r--r--. 1 boincer umatlas       620 Nov 26 19:34 runtime_log
[2025-11-26 19:34:10] -rw-------. 1 boincer umatlas  13086720 Nov 26 19:34 result.tar.gz
[2025-11-26 19:34:10] -rw-r--r--. 1 boincer umatlas      9328 Nov 26 19:34 runtime_log.err
[2025-11-26 19:34:10] -rw-------. 1 boincer umatlas       657 Nov 26 19:34 ExSLDm0VBi8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmaSMKDmj4nbJo.diag
[2025-11-26 19:34:10] -rw-r--r--. 1 boincer umatlas     21322 Nov 26 19:34 stderr.txt
[2025-11-26 19:34:10] HITS file was successfully produced:
[2025-11-26 19:34:10] -rw-------. 1 boincer umatlas 934150168 Nov 26 19:32 shared/HITS.pool.root.1
[2025-11-26 19:34:10]  *** Contents of shared directory: ***
[2025-11-26 19:34:10] total 1326576
[2025-11-26 19:34:10] -rw-r--r--. 2 boincer umatlas 410554812 Nov 25 21:39 ATLAS.root_0
[2025-11-26 19:34:10] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 21:39 start_atlas.sh
[2025-11-26 19:34:10] -rw-r--r--. 2 boincer umatlas    590108 Nov 25 21:39 input.tar.gz
[2025-11-26 19:34:10] -rw-------. 1 boincer umatlas 934150168 Nov 26 19:32 HITS.pool.root.1
[2025-11-26 19:34:10] -rw-------. 1 boincer umatlas  13086720 Nov 26 19:34 result.tar.gz
19:34:11 (1332037): run_atlas exited; CPU time 309277.719160
19:34:11 (1332037): called boinc_finish(0)

</stderr_txt>
]]>

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