Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
22:59:47 (195801): wrapper (7.7.26015): starting
22:59:47 (195801): wrapper: running run_atlas (--nthreads 8)
[2025-11-25 22:59:47] Arguments: --nthreads 8
[2025-11-25 22:59:47] Threads: 8
[2025-11-25 22:59:47] Checking for CVMFS
[2025-11-25 22:59:47] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 22:59:48] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 22:59:48] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 22:59:49] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 22:59:49] 2.13.3.0 10982 29542 340548 153307 3 134 32344754 40960000 24973 16776704 0 147348435 99.693 117950598 39290 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-25 22:59:49] CVMFS is ok
[2025-11-25 22:59:49] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 22:59:49] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 22:59:49] Further information can be found at the LHC@home message board.
[2025-11-25 22:59:49] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 22:59:49] Checking for apptainer binary...
[2025-11-25 22:59:49] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 22:59:49] Running /usr/bin/apptainer --version
[2025-11-25 22:59:49] apptainer version 1.4.4-1.el9
[2025-11-25 22:59:49] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 23:00:09] c6-8-12-3.aglt2.org
[2025-11-25 23:00:09] apptainer works
[2025-11-25 23:00:09] Set ATHENA_PROC_NUMBER=8
[2025-11-25 23:00:09] Set ATHENA_CORE_NUMBER=8
[2025-11-25 23:00:09] Starting ATLAS job with PandaID=6897394926
[2025-11-25 23:00:09] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 11:27:30]  *** The last 200 lines of the pilot log: ***
[2025-11-26 11:27:30] 2025-11-26 16:26:53,873 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 11:27:30] 2025-11-26 16:26:54,007 | INFO     | time since job start (44758s) is within the limit (172800.0s)
[2025-11-26 11:27:30] 2025-11-26 16:26:55,516 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-26 11:27:30] 2025-11-26 16:26:55,522 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 3098.612250000002
[2025-11-26 11:27:30] 2025-11-26 16:26:55,533 | INFO     | using path: /tmp/boinchome/slots/3/PanDA_Pilot-6897394926/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 11:27:30] 2025-11-26 16:26:55,534 | INFO     | extracted standard info from prmon json
[2025-11-26 11:27:30] 2025-11-26 16:26:55,534 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 11:27:30] 2025-11-26 16:26:55,534 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 11:27:30] 2025-11-26 16:26:55,578 | INFO     | fitting pss+swap vs Time
[2025-11-26 11:27:30] 2025-11-26 16:26:55,604 | INFO     | sum of square deviations: 121618429557.87962
[2025-11-26 11:27:30] 2025-11-26 16:26:55,666 | INFO     | sum of deviations: 1423980707775.3489
[2025-11-26 11:27:30] 2025-11-26 16:26:55,667 | INFO     | mean x: 1764152057.3005464
[2025-11-26 11:27:30] 2025-11-26 16:26:55,667 | INFO     | mean y: 2886167.12568306
[2025-11-26 11:27:30] 2025-11-26 16:26:55,667 | INFO     | intersect: -20652852476.35535
[2025-11-26 11:27:30] 2025-11-26 16:26:55,668 | INFO     | chi2: 7.390632194408283
[2025-11-26 11:27:30] 2025-11-26 16:26:55,693 | INFO     | sum of square deviations: 119143343269.65329
[2025-11-26 11:27:30] 2025-11-26 16:26:55,748 | INFO     | sum of deviations: 1672943552093.091
[2025-11-26 11:27:30] 2025-11-26 16:26:55,748 | INFO     | mean x: 1764151904.8060522
[2025-11-26 11:27:30] 2025-11-26 16:26:55,749 | INFO     | mean y: 2901513.9793672627
[2025-11-26 11:27:30] 2025-11-26 16:26:55,749 | INFO     | intersect: -24768323407.738564
[2025-11-26 11:27:30] 2025-11-26 16:26:55,749 | INFO     | chi2: 4.142650826625088
[2025-11-26 11:27:30] 2025-11-26 16:26:55,750 | INFO     | current chi2=4.142650826625088 (change=43.94727382375492 %)
[2025-11-26 11:27:30] 2025-11-26 16:26:55,770 | INFO     | sum of square deviations: 116702071568.88217
[2025-11-26 11:27:30] 2025-11-26 16:26:55,806 | INFO     | sum of deviations: 1740945589359.6133
[2025-11-26 11:27:30] 2025-11-26 16:26:55,806 | INFO     | mean x: 1764151752.3116343
[2025-11-26 11:27:30] 2025-11-26 16:26:55,806 | INFO     | mean y: 2905751.379501385
[2025-11-26 11:27:30] 2025-11-26 16:26:55,806 | INFO     | intersect: -26314469517.62054
[2025-11-26 11:27:30] 2025-11-26 16:26:55,807 | INFO     | chi2: 3.6394861713631914
[2025-11-26 11:27:30] 2025-11-26 16:26:55,808 | INFO     | current chi2=3.6394861713631914 (change=12.145958622146585 %)
[2025-11-26 11:27:30] 2025-11-26 16:26:55,808 | INFO     | right removable region: 721
[2025-11-26 11:27:30] 2025-11-26 16:26:55,808 | INFO     | sum of square deviations: 119142985809.65349
[2025-11-26 11:27:30] 2025-11-26 16:26:55,831 | INFO     | sum of deviations: 1167278978021.2417
[2025-11-26 11:27:30] 2025-11-26 16:26:55,831 | INFO     | mean x: 1764152209.8060522
[2025-11-26 11:27:30] 2025-11-26 16:26:55,832 | INFO     | mean y: 2901973.7180192573
[2025-11-26 11:27:30] 2025-11-26 16:26:55,832 | INFO     | intersect: -17281017633.82193
[2025-11-26 11:27:30] 2025-11-26 16:26:55,833 | INFO     | chi2: 4.277533900550001
[2025-11-26 11:27:30] 2025-11-26 16:26:55,833 | INFO     | current chi2=4.277533900550001 (change=42.122219208982386 %)
[2025-11-26 11:27:30] 2025-11-26 16:26:55,834 | INFO     | sum of square deviations: 116701445222.12329
[2025-11-26 11:27:30] 2025-11-26 16:26:55,856 | INFO     | sum of deviations: 1073279456750.0256
[2025-11-26 11:27:30] 2025-11-26 16:26:55,856 | INFO     | mean x: 1764152362.3088644
[2025-11-26 11:27:30] 2025-11-26 16:26:55,857 | INFO     | mean y: 2907834.6052631577
[2025-11-26 11:27:30] 2025-11-26 16:26:55,857 | INFO     | intersect: -16221642644.947771
[2025-11-26 11:27:30] 2025-11-26 16:26:55,858 | INFO     | chi2: 3.877222288082365
[2025-11-26 11:27:30] 2025-11-26 16:26:55,858 | INFO     | current chi2=3.877222288082365 (change=9.35846732660995 %)
[2025-11-26 11:27:30] 2025-11-26 16:26:55,862 | INFO     | left removable region: 20
[2025-11-26 11:27:30] 2025-11-26 16:26:55,863 | INFO     | sum of square deviations: 106811785284.62825
[2025-11-26 11:27:30] 2025-11-26 16:26:55,881 | INFO     | sum of deviations: 1291241535591.3235
[2025-11-26 11:27:30] 2025-11-26 16:26:55,881 | INFO     | mean x: 1764152331.8174038
[2025-11-26 11:27:30] 2025-11-26 16:26:55,881 | INFO     | mean y: 2933928.9243937233
[2025-11-26 11:27:30] 2025-11-26 16:26:55,882 | INFO     | intersect: -21323802253.63006
[2025-11-26 11:27:30] 2025-11-26 16:26:55,887 | INFO     | chi2: 0.030330166801379742
[2025-11-26 11:27:30] 2025-11-26 16:26:55,887 | INFO     | current memory leak: 12.09 B/s (using 701 data points, chi2=0.03)
[2025-11-26 11:27:30] 2025-11-26 16:26:55,888 | INFO     | could have reported an average CPU frequency of 3094 MHz (28 samples)
[2025-11-26 11:27:30] 2025-11-26 16:26:55,888 | INFO     | ..............................
[2025-11-26 11:27:30] 2025-11-26 16:26:55,888 | INFO     | . Timing measurements:
[2025-11-26 11:27:30] 2025-11-26 16:26:55,888 | INFO     | . get job = 0 s
[2025-11-26 11:27:30] 2025-11-26 16:26:55,888 | INFO     | . initial setup = 4 s
[2025-11-26 11:27:30] 2025-11-26 16:26:55,889 | INFO     | . payload setup = 26 s
[2025-11-26 11:27:30] 2025-11-26 16:26:55,889 | INFO     | . stage-in = 0 s
[2025-11-26 11:27:30] 2025-11-26 16:26:55,889 | INFO     | . payload execution = 44652 s
[2025-11-26 11:27:30] 2025-11-26 16:26:55,889 | INFO     | . stage-out = 7 s
[2025-11-26 11:27:30] 2025-11-26 16:26:55,889 | INFO     | . log creation = 1 s
[2025-11-26 11:27:30] 2025-11-26 16:26:55,889 | INFO     | ..............................
[2025-11-26 11:27:30] 2025-11-26 16:26:56,017 | INFO     | time since job start (44760s) is within the limit (172800.0s)
[2025-11-26 11:27:30] 2025-11-26 16:26:56,249 | INFO     | 
[2025-11-26 11:27:30] 2025-11-26 16:26:56,256 | INFO     | job summary report
[2025-11-26 11:27:30] 2025-11-26 16:26:56,256 | INFO     | --------------------------------------------------
[2025-11-26 11:27:30] 2025-11-26 16:26:56,256 | INFO     | PanDA job id: 6897394926
[2025-11-26 11:27:30] 2025-11-26 16:26:56,257 | INFO     | task id: 47556161
[2025-11-26 11:27:30] 2025-11-26 16:26:56,257 | INFO     | errors: (none)
[2025-11-26 11:27:30] 2025-11-26 16:26:56,257 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 11:27:30] 2025-11-26 16:26:56,257 | INFO     | pilot state: finished 
[2025-11-26 11:27:30] 2025-11-26 16:26:56,257 | INFO     | transexitcode: 0
[2025-11-26 11:27:30] 2025-11-26 16:26:56,257 | INFO     | exeerrorcode: 0
[2025-11-26 11:27:30] 2025-11-26 16:26:56,257 | INFO     | exeerrordiag: 
[2025-11-26 11:27:30] 2025-11-26 16:26:56,257 | INFO     | exitcode: 0
[2025-11-26 11:27:30] 2025-11-26 16:26:56,257 | INFO     | exitmsg: OK
[2025-11-26 11:27:30] 2025-11-26 16:26:56,257 | INFO     | cpuconsumptiontime: 231045 s
[2025-11-26 11:27:30] 2025-11-26 16:26:56,257 | INFO     | nevents: 1000
[2025-11-26 11:27:30] 2025-11-26 16:26:56,258 | INFO     | neventsw: 0
[2025-11-26 11:27:30] 2025-11-26 16:26:56,258 | INFO     | pid: 225489
[2025-11-26 11:27:30] 2025-11-26 16:26:56,258 | INFO     | pgrp: 225489
[2025-11-26 11:27:30] 2025-11-26 16:26:56,258 | INFO     | corecount: 8
[2025-11-26 11:27:30] 2025-11-26 16:26:56,258 | INFO     | event service: False
[2025-11-26 11:27:30] 2025-11-26 16:26:56,258 | INFO     | sizes: {0: 2284038, 1: 2284293, 12: 2284293, 23: 2284321, 24: 2284611, 34: 2284639, 44682: 2330600, 44691: 2339594, 44694: 2339650, 44705: 2339896}
[2025-11-26 11:27:30] 2025-11-26 16:26:56,258 | INFO     | --------------------------------------------------
[2025-11-26 11:27:30] 2025-11-26 16:26:56,258 | INFO     | 
[2025-11-26 11:27:30] 2025-11-26 16:26:56,258 | INFO     | executing command: ls -lF /tmp/boinchome/slots/3
[2025-11-26 11:27:30] 2025-11-26 16:26:56,326 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 11:27:30] 2025-11-26 16:26:56,327 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 11:27:30] 2025-11-26 16:26:56,327 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 11:27:30] 2025-11-26 16:26:56,327 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 11:27:30] 2025-11-26 16:26:56,327 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 11:27:30] 2025-11-26 16:26:56,327 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 11:27:30] 2025-11-26 16:26:56,327 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 11:27:30] 2025-11-26 16:26:56,327 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 11:27:30] 2025-11-26 16:26:56,327 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 11:27:30] 2025-11-26 16:26:56,327 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 11:27:30] 2025-11-26 16:26:56,327 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 11:27:30] 2025-11-26 16:26:56,327 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 11:27:30] 2025-11-26 16:26:56,327 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 11:27:30] 2025-11-26 16:26:56,328 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 11:27:30] 2025-11-26 16:26:56,328 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 11:27:30] 2025-11-26 16:26:56,328 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 11:27:30] 2025-11-26 16:26:56,328 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 11:27:30] 2025-11-26 16:26:56,328 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 11:27:30] 2025-11-26 16:26:56,328 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 11:27:30] 2025-11-26 16:26:56,328 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 11:27:30] 2025-11-26 16:26:56,328 | INFO     | job 6897394926 has completed (purged errors)
[2025-11-26 11:27:30] 2025-11-26 16:26:56,328 | INFO     | overall cleanup function is called
[2025-11-26 11:27:30] 2025-11-26 16:26:57,343 | INFO     | --- collectZombieJob: --- 10, [225489]
[2025-11-26 11:27:30] 2025-11-26 16:26:57,343 | INFO     | zombie collector waiting for pid 225489
[2025-11-26 11:27:30] 2025-11-26 16:26:57,343 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 11:27:30] 2025-11-26 16:26:57,343 | INFO     | collected zombie processes
[2025-11-26 11:27:30] 2025-11-26 16:26:57,343 | INFO     | will attempt to kill all subprocesses of pid=225489
[2025-11-26 11:27:30] 2025-11-26 16:26:58,138 | INFO     | process IDs to be killed: [225489] (in reverse order)
[2025-11-26 11:27:30] 2025-11-26 16:26:58,395 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 11:27:30] 2025-11-26 16:26:58,396 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 11:27:30] 2025-11-26 16:26:58,415 | INFO     | did not find any defunct processes belonging to 225489
[2025-11-26 11:27:30] 2025-11-26 16:26:58,438 | INFO     | did not find any defunct processes belonging to 225489
[2025-11-26 11:27:30] 2025-11-26 16:26:58,440 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 11:27:30] 2025-11-26 16:26:58,441 | INFO     | ready for new job
[2025-11-26 11:27:30] 2025-11-26 16:26:58,441 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 11:27:30] 2025-11-26 16:26:58,446 | INFO     | ***************************************
[2025-11-26 11:27:30] 2025-11-26 16:26:58,446 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 11:27:30] 2025-11-26 16:26:58,446 | INFO     | ***************************************
[2025-11-26 11:27:30] 2025-11-26 16:26:58,446 | INFO     | 
[2025-11-26 11:27:30] 2025-11-26 16:26:58,487 | INFO     | architecture information:
[2025-11-26 11:27:30] 2025-11-26 16:26:58,488 | INFO     | executing command: cat /etc/os-release
[2025-11-26 11:27:30] 2025-11-26 16:26:58,530 | INFO     | cat /etc/os-release:
[2025-11-26 11:27:30] NAME="CentOS Linux"
[2025-11-26 11:27:30] VERSION="7 (Core)"
[2025-11-26 11:27:30] ID="centos"
[2025-11-26 11:27:30] ID_LIKE="rhel fedora"
[2025-11-26 11:27:30] VERSION_ID="7"
[2025-11-26 11:27:30] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 11:27:30] ANSI_COLOR="0;31"
[2025-11-26 11:27:30] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 11:27:30] HOME_URL="https://www.centos.org/"
[2025-11-26 11:27:30] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 11:27:30] 
[2025-11-26 11:27:30] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 11:27:30] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 11:27:30] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 11:27:30] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 11:27:30] 
[2025-11-26 11:27:30] 2025-11-26 16:26:58,530 | INFO     | ***************************************
[2025-11-26 11:27:30] 2025-11-26 16:26:59,034 | INFO     | executing command: df -mP /tmp/boinchome/slots/3
[2025-11-26 11:27:30] 2025-11-26 16:26:59,083 | INFO     | sufficient remaining disk space (49105862656 B)
[2025-11-26 11:27:30] 2025-11-26 16:26:59,083 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 11:27:30] 2025-11-26 16:26:59,083 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 11:27:30] 2025-11-26 16:26:59,084 | INFO     | update_server=False
[2025-11-26 11:27:30] 2025-11-26 16:26:59,084 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 11:27:30] 2025-11-26 16:26:59,347 | INFO     | all data control threads have been joined
[2025-11-26 11:27:30] 2025-11-26 16:26:59,539 | INFO     | all job control threads have been joined
[2025-11-26 11:27:30] 2025-11-26 16:26:59,670 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 11:27:30] 2025-11-26 16:26:59,724 | INFO     | all payload control threads have been joined
[2025-11-26 11:27:30] 2025-11-26 16:26:59,901 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 11:27:30] 2025-11-26 16:26:59,901 | INFO     | aborting loop
[2025-11-26 11:27:30] 2025-11-26 16:27:00,088 | INFO     | [job] retrieve thread has finished
[2025-11-26 11:27:30] 2025-11-26 16:27:00,275 | INFO     | [payload] validate_post thread has finished
[2025-11-26 11:27:30] 2025-11-26 16:27:00,317 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 11:27:30] 2025-11-26 16:27:00,353 | INFO     | [data] control thread has finished
[2025-11-26 11:27:30] 2025-11-26 16:27:00,548 | INFO     | [job] control thread has finished
[2025-11-26 11:27:30] 2025-11-26 16:27:00,738 | INFO     | [payload] control thread has finished
[2025-11-26 11:27:30] 2025-11-26 16:27:00,787 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 11:27:30] 2025-11-26 16:27:00,907 | INFO     | [job] job monitor thread has finished
[2025-11-26 11:27:30] 2025-11-26 16:27:01,021 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 11:27:30] 2025-11-26 16:27:01,330 | INFO     | [data] copytool_in thread has finished
[2025-11-26 11:27:30] 2025-11-26 16:27:01,338 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 11:27:30] 2025-11-26 16:27:01,339 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 11:27:30] 2025-11-26 16:27:01,339 | INFO     | [job] validate thread has finished
[2025-11-26 11:27:30] 2025-11-26 16:27:01,339 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 11:27:30] 2025-11-26 16:27:01,692 | INFO     | [payload] failed_post thread has finished
[2025-11-26 11:27:30] 2025-11-26 16:27:02,030 | INFO     | [job] queue monitor thread has finished
[2025-11-26 11:27:30] 2025-11-26 16:27:02,324 | INFO     | [data] copytool_out thread has finished
[2025-11-26 11:27:30] 2025-11-26 16:27:03,681 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 11:27:30] 2025-11-26 16:27:13,618 | INFO     | [monitor] cgroup control has ended
[2025-11-26 11:27:30] 2025-11-26 16:27:15,599 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140430356817728)>', '<ExcThread(monitor, started 140429727102720)>']
[2025-11-26 11:27:30] 2025-11-26 16:27:20,625 | INFO     | all workflow threads have been joined
[2025-11-26 11:27:30] 2025-11-26 16:27:20,625 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 11:27:30] 2025-11-26 16:27:20,625 | INFO     | traces error code: 0
[2025-11-26 11:27:30] 2025-11-26 16:27:20,626 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 11:27:30] 2025-11-26 16:27:29,643 | INFO     | PID=209156 has CPU usage=3.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-26 11:27:30] 2025-11-26 16:27:29,643 | INFO     | .. there are 40 such processes running
[2025-11-26 11:27:30] 2025-11-26 16:27:29,645 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 11:27:30] 2025-11-26 16:27:29,645 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 11:27:30] 2025-11-26 16:27:29,645 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 11:27:30] 2025-11-26 16:27:29,645 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 11:27:30] 2025-11-26 16:27:29,645 | INFO     | [monitor] control thread has ended
[2025-11-26 11:27:30] 2025-11-26 16:27:29,852 [wrapper] ==== pilot stdout END ====
[2025-11-26 11:27:30] 2025-11-26 16:27:29,861 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 11:27:30] 2025-11-26 16:27:29,864 [wrapper] pilotpid: 209156
[2025-11-26 11:27:30] 2025-11-26 16:27:29,866 [wrapper] Pilot exit status: 0
[2025-11-26 11:27:30] 2025-11-26 16:27:29,942 [wrapper] pandaids: 6897394926
[2025-11-26 11:27:30] 2025-11-26 16:27:30,059 [wrapper] cleanup supervisor_pilot 2625283 209157
[2025-11-26 11:27:30] 2025-11-26 16:27:30,062 [wrapper] Test setup, not cleaning
[2025-11-26 11:27:30] 2025-11-26 16:27:30,069 [wrapper] apfmon messages muted
[2025-11-26 11:27:30] 2025-11-26 16:27:30,088 [wrapper] ==== wrapper stdout END ====
[2025-11-26 11:27:30] 2025-11-26 16:27:30,094 [wrapper] ==== wrapper stderr END ====
[2025-11-26 11:27:30]  *** Error codes and diagnostics ***
[2025-11-26 11:27:30]     "exeErrorCode": 0,
[2025-11-26 11:27:30]     "exeErrorDiag": "",
[2025-11-26 11:27:30]     "pilotErrorCode": 0,
[2025-11-26 11:27:30]     "pilotErrorDiag": "",
[2025-11-26 11:27:30]  *** Listing of results directory ***
[2025-11-26 11:27:30] total 1314992
[2025-11-26 11:27:30] -rw-r--r--. 1 boincer umatlas    576529 Nov 25 11:48 pilot3.tar.gz
[2025-11-26 11:27:30] -rw-r--r--. 1 boincer umatlas      5112 Nov 25 11:55 queuedata.json
[2025-11-26 11:27:30] -rwx------. 1 boincer umatlas     36292 Nov 25 11:56 runpilot2-wrapper.sh
[2025-11-26 11:27:30] -rw-r--r--. 1 boincer umatlas       100 Nov 25 22:59 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 11:27:30] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 25 22:59 run_atlas
[2025-11-26 11:27:30] -rw-r--r--. 1 boincer umatlas       105 Nov 25 22:59 job.xml
[2025-11-26 11:27:30] -rw-r--r--. 2 boincer umatlas 408796449 Nov 25 22:59 EVNT.47483658._002242.pool.root.1
[2025-11-26 11:27:30] drwxrwx--x. 2 boincer umatlas      4096 Nov 25 22:59 shared
[2025-11-26 11:27:30] -rw-r--r--. 2 boincer umatlas    590112 Nov 25 22:59 input.tar.gz
[2025-11-26 11:27:30] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 22:59 start_atlas.sh
[2025-11-26 11:27:30] -rw-r--r--. 1 boincer umatlas         0 Nov 25 22:59 boinc_lockfile
[2025-11-26 11:27:30] -rw-r--r--. 1 boincer umatlas      2786 Nov 25 23:00 pandaJob.out
[2025-11-26 11:27:30] -rw-------. 1 boincer umatlas        57 Nov 25 23:00 setup.sh.local
[2025-11-26 11:27:30] -rw-------. 1 boincer umatlas    991877 Nov 25 23:00 agis_schedconf.cvmfs.json
[2025-11-26 11:27:30] drwx------. 5 boincer umatlas      4096 Nov 25 23:00 pilot3
[2025-11-26 11:27:30] -rw-r--r--. 1 boincer umatlas       533 Nov 26 11:17 boinc_task_state.xml
[2025-11-26 11:27:30] -rw-r--r--. 1 boincer umatlas      6844 Nov 26 11:20 init_data.xml
[2025-11-26 11:27:30] -rw-------. 1 boincer umatlas 918349523 Nov 26 11:25 HITS.47556161._002258.pool.root.1
[2025-11-26 11:27:30] -rw-------. 1 boincer umatlas      1057 Nov 26 11:26 memory_monitor_summary.json
[2025-11-26 11:27:30] -rw-------. 1 boincer umatlas   1516240 Nov 26 11:26 agis_ddmendpoints.agis.ALL.json
[2025-11-26 11:27:30] -rw-------. 1 boincer umatlas   1964182 Nov 26 11:26 log.47556161._002258.job.log.tgz.1
[2025-11-26 11:27:30] -rw-------. 1 boincer umatlas      8612 Nov 26 11:26 heartbeat.json
[2025-11-26 11:27:30] -rw-------. 1 boincer umatlas        95 Nov 26 11:27 pilot_heartbeat.json
[2025-11-26 11:27:30] -rw-------. 1 boincer umatlas       822 Nov 26 11:27 pilotlog.txt
[2025-11-26 11:27:30] -rw-r--r--. 1 boincer umatlas        29 Nov 26 11:27 wrapper_checkpoint.txt
[2025-11-26 11:27:30] -rw-------. 1 boincer umatlas   5781556 Nov 26 11:27 log.47556161._002258.job.log.1
[2025-11-26 11:27:30] -rw-r--r--. 1 boincer umatlas      8192 Nov 26 11:27 boinc_mmap_file
[2025-11-26 11:27:30] -rw-------. 1 boincer umatlas       353 Nov 26 11:27 output.list
[2025-11-26 11:27:30] -rw-r--r--. 1 boincer umatlas       620 Nov 26 11:27 runtime_log
[2025-11-26 11:27:30] -rw-------. 1 boincer umatlas   7761920 Nov 26 11:27 result.tar.gz
[2025-11-26 11:27:30] -rw-------. 1 boincer umatlas       661 Nov 26 11:27 toeNDmzVBi8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmeRMKDm3D56Uo.diag
[2025-11-26 11:27:30] -rw-r--r--. 1 boincer umatlas      9348 Nov 26 11:27 runtime_log.err
[2025-11-26 11:27:30] -rw-r--r--. 1 boincer umatlas     21368 Nov 26 11:27 stderr.txt
[2025-11-26 11:27:30] HITS file was successfully produced:
[2025-11-26 11:27:30] -rw-------. 1 boincer umatlas 918349523 Nov 26 11:25 shared/HITS.pool.root.1
[2025-11-26 11:27:30]  *** Contents of shared directory: ***
[2025-11-26 11:27:30] total 1304228
[2025-11-26 11:27:30] -rw-r--r--. 2 boincer umatlas 408796449 Nov 25 22:59 ATLAS.root_0
[2025-11-26 11:27:30] -rw-r--r--. 2 boincer umatlas    590112 Nov 25 22:59 input.tar.gz
[2025-11-26 11:27:30] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 22:59 start_atlas.sh
[2025-11-26 11:27:30] -rw-------. 1 boincer umatlas 918349523 Nov 26 11:25 HITS.pool.root.1
[2025-11-26 11:27:30] -rw-------. 1 boincer umatlas   7761920 Nov 26 11:27 result.tar.gz
11:27:31 (195801): run_atlas exited; CPU time 232131.805384
11:27:31 (195801): called boinc_finish(0)

</stderr_txt>
]]>

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