Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
21:06:04 (29260): wrapper (7.7.26015): starting
21:06:04 (29260): wrapper: running run_atlas (--nthreads 8)
[2025-11-25 21:06:04] Arguments: --nthreads 8
[2025-11-25 21:06:04] Threads: 8
[2025-11-25 21:06:04] Checking for CVMFS
[2025-11-25 21:06:04] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 21:06:04] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 21:06:04] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 21:06:04] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 21:06:04] 2.11.2.0 21766 117076 139688 153304 3 82 16558266 18432001 1885 130560 0 85187552 99.974 4864429 27061 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-25 21:06:04] CVMFS is ok
[2025-11-25 21:06:04] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 21:06:04] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 21:06:04] Further information can be found at the LHC@home message board.
[2025-11-25 21:06:04] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 21:06:04] Checking for apptainer binary...
[2025-11-25 21:06:04] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 21:06:04] Running /usr/bin/apptainer --version
[2025-11-25 21:06:04] apptainer version 1.3.2-1.el7
[2025-11-25 21:06:04] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 21:06:05] c-206-18.aglt2.org
[2025-11-25 21:06:05] apptainer works
[2025-11-25 21:06:05] Set ATHENA_PROC_NUMBER=8
[2025-11-25 21:06:05] Set ATHENA_CORE_NUMBER=8
[2025-11-25 21:06:05] Starting ATLAS job with PandaID=6897394920
[2025-11-25 21:06:05] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 16:23:17]  *** The last 200 lines of the pilot log: ***
[2025-11-26 16:23:17] 2025-11-26 21:22:25,088 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 16:23:17] 2025-11-26 21:22:25,393 | INFO     | CPU arch script returned: x86-64-v2
[2025-11-26 16:23:17] 2025-11-26 21:22:25,398 | INFO     | found 12 cores (6 cores per socket, 2 sockets) HT, CPU MHz: 2466.7916666666665
[2025-11-26 16:23:17] 2025-11-26 21:22:25,402 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6897394920/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 16:23:17] 2025-11-26 21:22:25,403 | INFO     | extracted standard info from prmon json
[2025-11-26 16:23:17] 2025-11-26 21:22:25,403 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 16:23:17] 2025-11-26 21:22:25,403 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 16:23:17] 2025-11-26 21:22:25,434 | INFO     | fitting pss+swap vs Time
[2025-11-26 16:23:17] 2025-11-26 21:22:25,436 | INFO     | sum of square deviations: 455784089184.1761
[2025-11-26 16:23:17] 2025-11-26 21:22:25,477 | INFO     | sum of deviations: 2185848298378.5967
[2025-11-26 16:23:17] 2025-11-26 21:22:25,478 | INFO     | mean x: 1764157449.6112578
[2025-11-26 16:23:17] 2025-11-26 21:22:25,478 | INFO     | mean y: 2872350.750219877
[2025-11-26 16:23:17] 2025-11-26 21:22:25,478 | INFO     | intersect: -8457669934.1000595
[2025-11-26 16:23:17] 2025-11-26 21:22:25,480 | INFO     | chi2: 5.254292287556554
[2025-11-26 16:23:17] 2025-11-26 21:22:25,482 | INFO     | sum of square deviations: 449797714492.29974
[2025-11-26 16:23:17] 2025-11-26 21:22:25,522 | INFO     | sum of deviations: 2513481608900.491
[2025-11-26 16:23:17] 2025-11-26 21:22:25,522 | INFO     | mean x: 1764157297.1139576
[2025-11-26 16:23:17] 2025-11-26 21:22:25,523 | INFO     | mean y: 2880694.3295053
[2025-11-26 16:23:17] 2025-11-26 21:22:25,523 | INFO     | intersect: -9855277270.097952
[2025-11-26 16:23:17] 2025-11-26 21:22:25,524 | INFO     | chi2: 2.79202124186868
[2025-11-26 16:23:17] 2025-11-26 21:22:25,525 | INFO     | current chi2=2.79202124186868 (change=46.86208743124422 %)
[2025-11-26 16:23:17] 2025-11-26 21:22:25,526 | INFO     | sum of square deviations: 443863991950.40625
[2025-11-26 16:23:17] 2025-11-26 21:22:25,567 | INFO     | sum of deviations: 2629507881389.2
[2025-11-26 16:23:17] 2025-11-26 21:22:25,567 | INFO     | mean x: 1764157144.6166813
[2025-11-26 16:23:17] 2025-11-26 21:22:25,567 | INFO     | mean y: 2883673.6486246674
[2025-11-26 16:23:17] 2025-11-26 21:22:25,568 | INFO     | intersect: -10448212157.294426
[2025-11-26 16:23:17] 2025-11-26 21:22:25,569 | INFO     | chi2: 2.3607177694451327
[2025-11-26 16:23:17] 2025-11-26 21:22:25,569 | INFO     | current chi2=2.3607177694451327 (change=15.447714578807389 %)
[2025-11-26 16:23:17] 2025-11-26 21:22:25,570 | INFO     | right removable region: 1126
[2025-11-26 16:23:17] 2025-11-26 21:22:25,571 | INFO     | sum of square deviations: 449797290542.3
[2025-11-26 16:23:17] 2025-11-26 21:22:25,613 | INFO     | sum of deviations: 1898117344370.3035
[2025-11-26 16:23:17] 2025-11-26 21:22:25,613 | INFO     | mean x: 1764157602.1139576
[2025-11-26 16:23:17] 2025-11-26 21:22:25,613 | INFO     | mean y: 2879671.354240283
[2025-11-26 16:23:17] 2025-11-26 21:22:25,613 | INFO     | intersect: -7441758642.802789
[2025-11-26 16:23:17] 2025-11-26 21:22:25,615 | INFO     | chi2: 3.292978436796299
[2025-11-26 16:23:17] 2025-11-26 21:22:25,615 | INFO     | current chi2=3.292978436796299 (change=37.327840619090125 %)
[2025-11-26 16:23:17] 2025-11-26 21:22:25,617 | INFO     | sum of square deviations: 443863282032.8694
[2025-11-26 16:23:17] 2025-11-26 21:22:25,658 | INFO     | sum of deviations: 1821999222437.3525
[2025-11-26 16:23:17] 2025-11-26 21:22:25,658 | INFO     | mean x: 1764157754.6149068
[2025-11-26 16:23:17] 2025-11-26 21:22:25,658 | INFO     | mean y: 2881627.228926353
[2025-11-26 16:23:17] 2025-11-26 21:22:25,659 | INFO     | intersect: -7238749269.663235
[2025-11-26 16:23:17] 2025-11-26 21:22:25,660 | INFO     | chi2: 3.2388903012483183
[2025-11-26 16:23:17] 2025-11-26 21:22:25,661 | INFO     | current chi2=3.2388903012483183 (change=1.6425292963838007 %)
[2025-11-26 16:23:17] 2025-11-26 21:22:25,661 | INFO     | left removable region: 20
[2025-11-26 16:23:17] 2025-11-26 21:22:25,662 | INFO     | sum of square deviations: 419510988937.00635
[2025-11-26 16:23:17] 2025-11-26 21:22:25,701 | INFO     | sum of deviations: 2129155938309.2168
[2025-11-26 16:23:17] 2025-11-26 21:22:25,701 | INFO     | mean x: 1764157724.120253
[2025-11-26 16:23:17] 2025-11-26 21:22:25,701 | INFO     | mean y: 2897180.3743218808
[2025-11-26 16:23:17] 2025-11-26 21:22:25,702 | INFO     | intersect: -8950782207.005766
[2025-11-26 16:23:17] 2025-11-26 21:22:25,703 | INFO     | chi2: 0.23433440641655556
[2025-11-26 16:23:17] 2025-11-26 21:22:25,704 | INFO     | current memory leak: 5.08 B/s (using 1106 data points, chi2=0.23)
[2025-11-26 16:23:17] 2025-11-26 21:22:25,705 | INFO     | could have reported an average CPU frequency of 2630 MHz (41 samples)
[2025-11-26 16:23:17] 2025-11-26 21:22:25,705 | INFO     | ..............................
[2025-11-26 16:23:17] 2025-11-26 21:22:25,705 | INFO     | . Timing measurements:
[2025-11-26 16:23:17] 2025-11-26 21:22:25,705 | INFO     | . get job = 0 s
[2025-11-26 16:23:17] 2025-11-26 21:22:25,706 | INFO     | . initial setup = 2 s
[2025-11-26 16:23:17] 2025-11-26 21:22:25,706 | INFO     | . payload setup = 5 s
[2025-11-26 16:23:17] 2025-11-26 21:22:25,706 | INFO     | . stage-in = 0 s
[2025-11-26 16:23:17] 2025-11-26 21:22:25,706 | INFO     | . payload execution = 69334 s
[2025-11-26 16:23:17] 2025-11-26 21:22:25,706 | INFO     | . stage-out = 4 s
[2025-11-26 16:23:17] 2025-11-26 21:22:25,706 | INFO     | . log creation = 0 s
[2025-11-26 16:23:17] 2025-11-26 21:22:25,707 | INFO     | ..............................
[2025-11-26 16:23:17] 2025-11-26 21:22:25,926 | INFO     | time since job start (69369s) is within the limit (172800.0s)
[2025-11-26 16:23:17] 2025-11-26 21:22:26,323 | INFO     | 
[2025-11-26 16:23:17] 2025-11-26 21:22:26,324 | INFO     | job summary report
[2025-11-26 16:23:17] 2025-11-26 21:22:26,324 | INFO     | --------------------------------------------------
[2025-11-26 16:23:17] 2025-11-26 21:22:26,324 | INFO     | PanDA job id: 6897394920
[2025-11-26 16:23:17] 2025-11-26 21:22:26,324 | INFO     | task id: 47556161
[2025-11-26 16:23:17] 2025-11-26 21:22:26,324 | INFO     | errors: (none)
[2025-11-26 16:23:17] 2025-11-26 21:22:26,325 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 16:23:17] 2025-11-26 21:22:26,325 | INFO     | pilot state: finished 
[2025-11-26 16:23:17] 2025-11-26 21:22:26,325 | INFO     | transexitcode: 0
[2025-11-26 16:23:17] 2025-11-26 21:22:26,325 | INFO     | exeerrorcode: 0
[2025-11-26 16:23:17] 2025-11-26 21:22:26,325 | INFO     | exeerrordiag: 
[2025-11-26 16:23:17] 2025-11-26 21:22:26,326 | INFO     | exitcode: 0
[2025-11-26 16:23:17] 2025-11-26 21:22:26,326 | INFO     | exitmsg: OK
[2025-11-26 16:23:17] 2025-11-26 21:22:26,326 | INFO     | cpuconsumptiontime: 534631 s
[2025-11-26 16:23:17] 2025-11-26 21:22:26,326 | INFO     | nevents: 1000
[2025-11-26 16:23:17] 2025-11-26 21:22:26,326 | INFO     | neventsw: 0
[2025-11-26 16:23:17] 2025-11-26 21:22:26,326 | INFO     | pid: 7995
[2025-11-26 16:23:17] 2025-11-26 21:22:26,327 | INFO     | pgrp: 7995
[2025-11-26 16:23:17] 2025-11-26 21:22:26,327 | INFO     | corecount: 8
[2025-11-26 16:23:17] 2025-11-26 21:22:26,327 | INFO     | event service: False
[2025-11-26 16:23:17] 2025-11-26 21:22:26,327 | INFO     | sizes: {0: 2284038, 1: 2284293, 4: 2284555, 12: 2284583, 69343: 2340868, 69348: 2349862, 69349: 2350046, 69355: 2350388}
[2025-11-26 16:23:17] 2025-11-26 21:22:26,327 | INFO     | --------------------------------------------------
[2025-11-26 16:23:17] 2025-11-26 21:22:26,328 | INFO     | 
[2025-11-26 16:23:17] 2025-11-26 21:22:26,328 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-11-26 16:23:17] 2025-11-26 21:22:26,346 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 16:23:17] 2025-11-26 21:22:26,346 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 16:23:17] 2025-11-26 21:22:26,346 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 16:23:17] 2025-11-26 21:22:26,346 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 16:23:17] 2025-11-26 21:22:26,346 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 16:23:17] 2025-11-26 21:22:26,347 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 16:23:17] 2025-11-26 21:22:26,347 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 16:23:17] 2025-11-26 21:22:26,347 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 16:23:17] 2025-11-26 21:22:26,347 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 16:23:17] 2025-11-26 21:22:26,347 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 16:23:17] 2025-11-26 21:22:26,348 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 16:23:17] 2025-11-26 21:22:26,348 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 16:23:17] 2025-11-26 21:22:26,348 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 16:23:17] 2025-11-26 21:22:26,348 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 16:23:17] 2025-11-26 21:22:26,348 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 16:23:17] 2025-11-26 21:22:26,349 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 16:23:17] 2025-11-26 21:22:26,349 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 16:23:17] 2025-11-26 21:22:26,349 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 16:23:17] 2025-11-26 21:22:26,349 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 16:23:17] 2025-11-26 21:22:26,349 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 16:23:17] 2025-11-26 21:22:26,350 | INFO     | job 6897394920 has completed (purged errors)
[2025-11-26 16:23:17] 2025-11-26 21:22:26,350 | INFO     | overall cleanup function is called
[2025-11-26 16:23:17] 2025-11-26 21:22:27,129 | INFO     | PID=477 has CPU usage=18.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-11-26 16:23:17] 2025-11-26 21:22:27,129 | INFO     | .. there are 3 such processes running
[2025-11-26 16:23:17] 2025-11-26 21:22:27,366 | INFO     | --- collectZombieJob: --- 10, [7995]
[2025-11-26 16:23:17] 2025-11-26 21:22:27,366 | INFO     | zombie collector waiting for pid 7995
[2025-11-26 16:23:17] 2025-11-26 21:22:27,366 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 16:23:17] 2025-11-26 21:22:27,366 | INFO     | collected zombie processes
[2025-11-26 16:23:17] 2025-11-26 21:22:27,367 | INFO     | will attempt to kill all subprocesses of pid=7995
[2025-11-26 16:23:17] 2025-11-26 21:22:27,546 | INFO     | process IDs to be killed: [7995] (in reverse order)
[2025-11-26 16:23:17] 2025-11-26 21:22:27,586 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 16:23:17] 2025-11-26 21:22:27,586 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 16:23:17] 2025-11-26 21:22:27,589 | INFO     | did not find any defunct processes belonging to 7995
[2025-11-26 16:23:17] 2025-11-26 21:22:27,592 | INFO     | did not find any defunct processes belonging to 7995
[2025-11-26 16:23:17] 2025-11-26 21:22:27,593 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 16:23:17] 2025-11-26 21:22:27,593 | INFO     | ready for new job
[2025-11-26 16:23:17] 2025-11-26 21:22:27,593 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 16:23:17] 2025-11-26 21:22:27,597 | INFO     | ***************************************
[2025-11-26 16:23:17] 2025-11-26 21:22:27,597 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 16:23:17] 2025-11-26 21:22:27,597 | INFO     | ***************************************
[2025-11-26 16:23:17] 2025-11-26 21:22:27,597 | INFO     | 
[2025-11-26 16:23:17] 2025-11-26 21:22:27,598 | INFO     | architecture information:
[2025-11-26 16:23:17] 2025-11-26 21:22:27,598 | INFO     | executing command: cat /etc/os-release
[2025-11-26 16:23:17] 2025-11-26 21:22:27,608 | INFO     | cat /etc/os-release:
[2025-11-26 16:23:17] NAME="CentOS Linux"
[2025-11-26 16:23:17] VERSION="7 (Core)"
[2025-11-26 16:23:17] ID="centos"
[2025-11-26 16:23:17] ID_LIKE="rhel fedora"
[2025-11-26 16:23:17] VERSION_ID="7"
[2025-11-26 16:23:17] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 16:23:17] ANSI_COLOR="0;31"
[2025-11-26 16:23:17] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 16:23:17] HOME_URL="https://www.centos.org/"
[2025-11-26 16:23:17] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 16:23:17] 
[2025-11-26 16:23:17] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 16:23:17] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 16:23:17] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 16:23:17] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 16:23:17] 
[2025-11-26 16:23:17] 2025-11-26 21:22:27,608 | INFO     | ***************************************
[2025-11-26 16:23:17] 2025-11-26 21:22:28,112 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-11-26 16:23:17] 2025-11-26 21:22:28,125 | INFO     | sufficient remaining disk space (25785532416 B)
[2025-11-26 16:23:17] 2025-11-26 21:22:28,125 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 16:23:17] 2025-11-26 21:22:28,125 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 16:23:17] 2025-11-26 21:22:28,126 | INFO     | update_server=False
[2025-11-26 16:23:17] 2025-11-26 21:22:28,126 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 16:23:17] 2025-11-26 21:22:28,129 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-11-26 16:23:17] 2025-11-26 21:22:28,129 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 16:23:17] 2025-11-26 21:22:28,129 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 16:23:17] 2025-11-26 21:22:28,129 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 16:23:17] 2025-11-26 21:22:28,134 | INFO     | all payload control threads have been joined
[2025-11-26 16:23:17] 2025-11-26 21:22:28,601 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 16:23:17] 2025-11-26 21:22:28,601 | INFO     | aborting loop
[2025-11-26 16:23:17] 2025-11-26 21:22:28,674 | INFO     | all data control threads have been joined
[2025-11-26 16:23:17] 2025-11-26 21:22:28,895 | INFO     | all job control threads have been joined
[2025-11-26 16:23:17] 2025-11-26 21:22:29,131 | INFO     | [job] retrieve thread has finished
[2025-11-26 16:23:17] 2025-11-26 21:22:29,140 | INFO     | [payload] control thread has finished
[2025-11-26 16:23:17] 2025-11-26 21:22:29,360 | INFO     | [payload] failed_post thread has finished
[2025-11-26 16:23:17] 2025-11-26 21:22:29,496 | INFO     | [payload] validate_post thread has finished
[2025-11-26 16:23:17] 2025-11-26 21:22:29,565 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 16:23:17] 2025-11-26 21:22:29,607 | INFO     | [job] job monitor thread has finished
[2025-11-26 16:23:17] 2025-11-26 21:22:29,680 | INFO     | [data] control thread has finished
[2025-11-26 16:23:17] 2025-11-26 21:22:29,850 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 16:23:17] 2025-11-26 21:22:29,904 | INFO     | [job] control thread has finished
[2025-11-26 16:23:17] 2025-11-26 21:22:29,939 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 16:23:17] 2025-11-26 21:22:29,939 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 16:23:17] 2025-11-26 21:22:30,283 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 16:23:17] 2025-11-26 21:22:30,283 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 16:23:17] 2025-11-26 21:22:30,336 | INFO     | [job] validate thread has finished
[2025-11-26 16:23:17] 2025-11-26 21:22:30,538 | INFO     | [data] copytool_in thread has finished
[2025-11-26 16:23:17] 2025-11-26 21:22:30,877 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 16:23:17] 2025-11-26 21:22:31,570 | INFO     | [data] copytool_out thread has finished
[2025-11-26 16:23:17] 2025-11-26 21:22:31,882 | INFO     | [job] queue monitor thread has finished
[2025-11-26 16:23:17] 2025-11-26 21:22:33,945 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 16:23:17] 2025-11-26 21:23:10,875 | INFO     | [monitor] cgroup control has ended
[2025-11-26 16:23:17] 2025-11-26 21:23:12,340 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140172541642560)>', '<ExcThread(monitor, started 140171878061824)>']
[2025-11-26 16:23:17] 2025-11-26 21:23:12,355 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 16:23:17] 2025-11-26 21:23:12,355 | INFO     | [monitor] control thread has ended
[2025-11-26 16:23:17] 2025-11-26 21:23:17,363 | INFO     | all workflow threads have been joined
[2025-11-26 16:23:17] 2025-11-26 21:23:17,363 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 16:23:17] 2025-11-26 21:23:17,364 | INFO     | traces error code: 0
[2025-11-26 16:23:17] 2025-11-26 21:23:17,364 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 16:23:17] 2025-11-26 21:23:17,486 [wrapper] ==== pilot stdout END ====
[2025-11-26 16:23:17] 2025-11-26 21:23:17,489 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 16:23:17] 2025-11-26 21:23:17,491 [wrapper] pilotpid: 477
[2025-11-26 16:23:17] 2025-11-26 21:23:17,494 [wrapper] Pilot exit status: 0
[2025-11-26 16:23:17] 2025-11-26 21:23:17,505 [wrapper] pandaids: 6897394920
[2025-11-26 16:23:17] 2025-11-26 21:23:17,535 [wrapper] cleanup supervisor_pilot 30274 478
[2025-11-26 16:23:17] 2025-11-26 21:23:17,538 [wrapper] Test setup, not cleaning
[2025-11-26 16:23:17] 2025-11-26 21:23:17,543 [wrapper] apfmon messages muted
[2025-11-26 16:23:17] 2025-11-26 21:23:17,545 [wrapper] ==== wrapper stdout END ====
[2025-11-26 16:23:17] 2025-11-26 21:23:17,547 [wrapper] ==== wrapper stderr END ====
[2025-11-26 16:23:17]  *** Error codes and diagnostics ***
[2025-11-26 16:23:17]     "exeErrorCode": 0,
[2025-11-26 16:23:17]     "exeErrorDiag": "",
[2025-11-26 16:23:17]     "pilotErrorCode": 0,
[2025-11-26 16:23:17]     "pilotErrorDiag": "",
[2025-11-26 16:23:17]  *** Listing of results directory ***
[2025-11-26 16:23:17] total 1320332
[2025-11-26 16:23:17] -rw-r--r-- 1 boincer umatlas    576529 Nov 25 11:48 pilot3.tar.gz
[2025-11-26 16:23:17] -rw-r--r-- 1 boincer umatlas      5112 Nov 25 11:55 queuedata.json
[2025-11-26 16:23:17] -rwx------ 1 boincer umatlas     36292 Nov 25 11:56 runpilot2-wrapper.sh
[2025-11-26 16:23:17] -rw-r--r-- 1 boincer umatlas       100 Nov 25 21:06 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 16:23:17] -rwxr-xr-x 1 boincer umatlas      7986 Nov 25 21:06 run_atlas
[2025-11-26 16:23:17] -rw-r--r-- 1 boincer umatlas       105 Nov 25 21:06 job.xml
[2025-11-26 16:23:17] -rw-r--r-- 2 boincer umatlas 408796449 Nov 25 21:06 EVNT.47483658._002242.pool.root.1
[2025-11-26 16:23:17] drwxrwx--x 2 boincer umatlas      4096 Nov 25 21:06 shared
[2025-11-26 16:23:17] -rw-r--r-- 2 boincer umatlas    590106 Nov 25 21:06 input.tar.gz
[2025-11-26 16:23:17] -rw-r--r-- 2 boincer umatlas     15847 Nov 25 21:06 start_atlas.sh
[2025-11-26 16:23:17] -rw-r--r-- 1 boincer umatlas         0 Nov 25 21:06 boinc_lockfile
[2025-11-26 16:23:17] -rw-r--r-- 1 boincer umatlas      2786 Nov 25 21:06 pandaJob.out
[2025-11-26 16:23:17] -rw------- 1 boincer umatlas        57 Nov 25 21:06 setup.sh.local
[2025-11-26 16:23:17] -rw------- 1 boincer umatlas    991877 Nov 25 21:06 agis_schedconf.cvmfs.json
[2025-11-26 16:23:17] drwx------ 5 boincer umatlas      4096 Nov 25 21:06 pilot3
[2025-11-26 16:23:17] -rw-r--r-- 1 boincer umatlas       533 Nov 26 16:11 boinc_task_state.xml
[2025-11-26 16:23:17] -rw------- 1 boincer umatlas 915470931 Nov 26 16:21 HITS.47556161._002252.pool.root.1
[2025-11-26 16:23:17] -rw------- 1 boincer umatlas        95 Nov 26 16:21 pilot_heartbeat.json
[2025-11-26 16:23:17] -rw-r--r-- 1 boincer umatlas      5954 Nov 26 16:21 init_data.xml
[2025-11-26 16:23:17] -rw------- 1 boincer umatlas      1067 Nov 26 16:22 memory_monitor_summary.json
[2025-11-26 16:23:17] -rw------- 1 boincer umatlas   1516240 Nov 26 16:22 agis_ddmendpoints.agis.ALL.json
[2025-11-26 16:23:17] -rw------- 1 boincer umatlas   2319811 Nov 26 16:22 log.47556161._002252.job.log.tgz.1
[2025-11-26 16:23:17] -rw------- 1 boincer umatlas      8660 Nov 26 16:22 heartbeat.json
[2025-11-26 16:23:17] -rw-r--r-- 1 boincer umatlas      8192 Nov 26 16:23 boinc_mmap_file
[2025-11-26 16:23:17] -rw-r--r-- 1 boincer umatlas        29 Nov 26 16:23 wrapper_checkpoint.txt
[2025-11-26 16:23:17] -rw------- 1 boincer umatlas      4552 Nov 26 16:23 pilotlog.txt
[2025-11-26 16:23:17] -rw------- 1 boincer umatlas   9596279 Nov 26 16:23 log.47556161._002252.job.log.1
[2025-11-26 16:23:17] -rw------- 1 boincer umatlas       353 Nov 26 16:23 output.list
[2025-11-26 16:23:17] -rw-r--r-- 1 boincer umatlas       620 Nov 26 16:23 runtime_log
[2025-11-26 16:23:17] -rw------- 1 boincer umatlas  11939840 Nov 26 16:23 result.tar.gz
[2025-11-26 16:23:17] -rw-r--r-- 1 boincer umatlas      9343 Nov 26 16:23 runtime_log.err
[2025-11-26 16:23:17] -rw------- 1 boincer umatlas       668 Nov 26 16:23 ReaNDmzVBi8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmbRMKDmVfoIPm.diag
[2025-11-26 16:23:17] -rw-r--r-- 1 boincer umatlas     21319 Nov 26 16:23 stderr.txt
[2025-11-26 16:23:17] HITS file was successfully produced:
[2025-11-26 16:23:17] -rw------- 1 boincer umatlas 915470931 Nov 26 16:21 shared/HITS.pool.root.1
[2025-11-26 16:23:17]  *** Contents of shared directory: ***
[2025-11-26 16:23:17] total 1305492
[2025-11-26 16:23:17] -rw-r--r-- 2 boincer umatlas 408796449 Nov 25 21:06 ATLAS.root_0
[2025-11-26 16:23:17] -rw-r--r-- 2 boincer umatlas    590106 Nov 25 21:06 input.tar.gz
[2025-11-26 16:23:17] -rw-r--r-- 2 boincer umatlas     15847 Nov 25 21:06 start_atlas.sh
[2025-11-26 16:23:17] -rw------- 1 boincer umatlas 915470931 Nov 26 16:21 HITS.pool.root.1
[2025-11-26 16:23:17] -rw------- 1 boincer umatlas  11939840 Nov 26 16:23 result.tar.gz
16:23:19 (29260): run_atlas exited; CPU time 533346.813626
16:23:19 (29260): called boinc_finish(0)

</stderr_txt>
]]>

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