Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:03:47 (3550580): wrapper (7.7.26015): starting
00:03:47 (3550580): wrapper: running run_atlas (--nthreads 9)
[2025-11-26 00:03:47] Arguments: --nthreads 9
[2025-11-26 00:03:47] Threads: 9
[2025-11-26 00:03:47] Checking for CVMFS
[2025-11-26 00:03:48] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 00:03:48] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 00:03:48] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 00:04:09] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 00:04:09] 2.13.2.0 6122 34674 374792 153309 1 102 35509501 40960000 15574 16776704 0 70365092 99.605 75914474 40299 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-26 00:04:09] CVMFS is ok
[2025-11-26 00:04:09] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 00:04:09] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 00:04:09] Further information can be found at the LHC@home message board.
[2025-11-26 00:04:09] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 00:04:09] Checking for apptainer binary...
[2025-11-26 00:04:09] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 00:04:09] Running /usr/bin/apptainer --version
[2025-11-26 00:04:09] apptainer version 1.4.4-1.el9
[2025-11-26 00:04:09] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 00:04:09] c-210-35-2.aglt2.org
[2025-11-26 00:04:09] apptainer works
[2025-11-26 00:04:09] Set ATHENA_PROC_NUMBER=9
[2025-11-26 00:04:09] Set ATHENA_CORE_NUMBER=9
[2025-11-26 00:04:10] Starting ATLAS job with PandaID=6897394928
[2025-11-26 00:04:10] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 21:25:28]  *** The last 200 lines of the pilot log: ***
[2025-11-26 21:25:28] 2025-11-27 02:24:55,128 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 2778.382732142858
[2025-11-26 21:25:28] 2025-11-27 02:24:55,137 | INFO     | using path: /tmp/boinchome/slots/5/PanDA_Pilot-6897394928/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 21:25:28] 2025-11-27 02:24:55,138 | INFO     | extracted standard info from prmon json
[2025-11-26 21:25:28] 2025-11-27 02:24:55,138 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 21:25:28] 2025-11-27 02:24:55,138 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 21:25:28] 2025-11-27 02:24:55,208 | INFO     | fitting pss+swap vs Time
[2025-11-26 21:25:28] 2025-11-27 02:24:55,210 | INFO     | sum of square deviations: 617322164844.6685
[2025-11-26 21:25:28] 2025-11-27 02:24:55,307 | INFO     | sum of deviations: 4863981172177.46
[2025-11-26 21:25:28] 2025-11-27 02:24:55,308 | INFO     | mean x: 1764171912.4618442
[2025-11-26 21:25:28] 2025-11-27 02:24:55,308 | INFO     | mean y: 3104738.1868044515
[2025-11-26 21:25:28] 2025-11-27 02:24:55,308 | INFO     | intersect: -13897091067.771097
[2025-11-26 21:25:28] 2025-11-27 02:24:55,310 | INFO     | chi2: 12.984799815675276
[2025-11-26 21:25:28] 2025-11-27 02:24:55,311 | INFO     | sum of square deviations: 609991235912.848
[2025-11-26 21:25:28] 2025-11-27 02:24:55,336 | INFO     | monitor loop #4785: job 0:6897394928 is in state 'finished'
[2025-11-26 21:25:28] 2025-11-27 02:24:55,336 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 21:25:28] 2025-11-27 02:24:55,337 | INFO     | sum of deviations: 5358019483685.755
[2025-11-26 21:25:28] 2025-11-27 02:24:55,338 | INFO     | mean x: 1764171759.9696727
[2025-11-26 21:25:28] 2025-11-27 02:24:55,338 | INFO     | mean y: 3115012.8619313645
[2025-11-26 21:25:28] 2025-11-27 02:24:55,338 | INFO     | intersect: -15492954612.368238
[2025-11-26 21:25:28] 2025-11-27 02:24:55,339 | INFO     | chi2: 9.299132525288522
[2025-11-26 21:25:28] 2025-11-27 02:24:55,339 | INFO     | current chi2=9.299132525288522 (change=28.38447525342215 %)
[2025-11-26 21:25:28] 2025-11-27 02:24:55,340 | INFO     | sum of square deviations: 602718510957.329
[2025-11-26 21:25:28] 2025-11-27 02:24:55,375 | INFO     | sum of deviations: 5685118521703.721
[2025-11-26 21:25:28] 2025-11-27 02:24:55,375 | INFO     | mean x: 1764171607.4767628
[2025-11-26 21:25:28] 2025-11-27 02:24:55,375 | INFO     | mean y: 3121865.059294872
[2025-11-26 21:25:28] 2025-11-27 02:24:55,375 | INFO     | intersect: -16637357062.988821
[2025-11-26 21:25:28] 2025-11-27 02:24:55,376 | INFO     | chi2: 7.3073155475916565
[2025-11-26 21:25:28] 2025-11-27 02:24:55,380 | INFO     | current chi2=7.3073155475916565 (change=21.419384789712588 %)
[2025-11-26 21:25:28] 2025-11-27 02:24:55,380 | INFO     | right removable region: 1247
[2025-11-26 21:25:28] 2025-11-27 02:24:55,382 | INFO     | sum of square deviations: 609989730432.8481
[2025-11-26 21:25:28] 2025-11-27 02:24:55,412 | INFO     | sum of deviations: 4345558377621.422
[2025-11-26 21:25:28] 2025-11-27 02:24:55,413 | INFO     | mean x: 1764172064.9696727
[2025-11-26 21:25:28] 2025-11-27 02:24:55,413 | INFO     | mean y: 3115519.800478851
[2025-11-26 21:25:28] 2025-11-27 02:24:55,413 | INFO     | intersect: -12564821797.856716
[2025-11-26 21:25:28] 2025-11-27 02:24:55,414 | INFO     | chi2: 9.261843615225397
[2025-11-26 21:25:28] 2025-11-27 02:24:55,414 | INFO     | current chi2=9.261843615225397 (change=28.671648799356298 %)
[2025-11-26 21:25:28] 2025-11-27 02:24:55,435 | INFO     | sum of square deviations: 602715576183.3721
[2025-11-26 21:25:28] 2025-11-27 02:24:55,494 | INFO     | sum of deviations: 3956640690014.9746
[2025-11-26 21:25:28] 2025-11-27 02:24:55,494 | INFO     | mean x: 1764172217.477564
[2025-11-26 21:25:28] 2025-11-27 02:24:55,494 | INFO     | mean y: 3123672.0705128205
[2025-11-26 21:25:28] 2025-11-27 02:24:55,494 | INFO     | intersect: -11578119381.356068
[2025-11-26 21:25:28] 2025-11-27 02:24:55,495 | INFO     | chi2: 7.345275133657265
[2025-11-26 21:25:28] 2025-11-27 02:24:55,496 | INFO     | current chi2=7.345275133657265 (change=20.693163922758483 %)
[2025-11-26 21:25:28] 2025-11-27 02:24:55,496 | INFO     | left removable region: 20
[2025-11-26 21:25:28] 2025-11-27 02:24:55,497 | INFO     | sum of square deviations: 572800721875.7914
[2025-11-26 21:25:28] 2025-11-27 02:24:55,523 | INFO     | sum of deviations: 4449923173979.003
[2025-11-26 21:25:28] 2025-11-27 02:24:55,523 | INFO     | mean x: 1764172186.9869602
[2025-11-26 21:25:28] 2025-11-27 02:24:55,523 | INFO     | mean y: 3149455.500407498
[2025-11-26 21:25:28] 2025-11-27 02:24:55,523 | INFO     | intersect: -13702194127.26277
[2025-11-26 21:25:28] 2025-11-27 02:24:55,524 | INFO     | chi2: 0.7706981742351255
[2025-11-26 21:25:28] 2025-11-27 02:24:55,525 | INFO     | current memory leak: 7.77 B/s (using 1227 data points, chi2=0.77)
[2025-11-26 21:25:28] 2025-11-27 02:24:55,526 | INFO     | could have reported an average CPU frequency of 2932 MHz (45 samples)
[2025-11-26 21:25:28] 2025-11-27 02:24:55,526 | INFO     | ..............................
[2025-11-26 21:25:28] 2025-11-27 02:24:55,526 | INFO     | . Timing measurements:
[2025-11-26 21:25:28] 2025-11-27 02:24:55,526 | INFO     | . get job = 0 s
[2025-11-26 21:25:28] 2025-11-27 02:24:55,526 | INFO     | . initial setup = 4 s
[2025-11-26 21:25:28] 2025-11-27 02:24:55,526 | INFO     | . payload setup = 23 s
[2025-11-26 21:25:28] 2025-11-27 02:24:55,526 | INFO     | . stage-in = 0 s
[2025-11-26 21:25:28] 2025-11-27 02:24:55,526 | INFO     | . payload execution = 76711 s
[2025-11-26 21:25:28] 2025-11-27 02:24:55,526 | INFO     | . stage-out = 5 s
[2025-11-26 21:25:28] 2025-11-27 02:24:55,526 | INFO     | . log creation = 1 s
[2025-11-26 21:25:28] 2025-11-27 02:24:55,526 | INFO     | ..............................
[2025-11-26 21:25:28] 2025-11-27 02:24:55,649 | INFO     | 
[2025-11-26 21:25:28] 2025-11-27 02:24:55,650 | INFO     | job summary report
[2025-11-26 21:25:28] 2025-11-27 02:24:55,650 | INFO     | --------------------------------------------------
[2025-11-26 21:25:28] 2025-11-27 02:24:55,650 | INFO     | PanDA job id: 6897394928
[2025-11-26 21:25:28] 2025-11-27 02:24:55,650 | INFO     | task id: 47556161
[2025-11-26 21:25:28] 2025-11-27 02:24:55,650 | INFO     | errors: (none)
[2025-11-26 21:25:28] 2025-11-27 02:24:55,650 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 21:25:28] 2025-11-27 02:24:55,650 | INFO     | pilot state: finished 
[2025-11-26 21:25:28] 2025-11-27 02:24:55,650 | INFO     | transexitcode: 0
[2025-11-26 21:25:28] 2025-11-27 02:24:55,650 | INFO     | exeerrorcode: 0
[2025-11-26 21:25:28] 2025-11-27 02:24:55,650 | INFO     | exeerrordiag: 
[2025-11-26 21:25:28] 2025-11-27 02:24:55,650 | INFO     | exitcode: 0
[2025-11-26 21:25:28] 2025-11-27 02:24:55,650 | INFO     | exitmsg: OK
[2025-11-26 21:25:28] 2025-11-27 02:24:55,651 | INFO     | cpuconsumptiontime: 235736 s
[2025-11-26 21:25:28] 2025-11-27 02:24:55,651 | INFO     | nevents: 1000
[2025-11-26 21:25:28] 2025-11-27 02:24:55,651 | INFO     | neventsw: 0
[2025-11-26 21:25:28] 2025-11-27 02:24:55,651 | INFO     | pid: 3577706
[2025-11-26 21:25:28] 2025-11-27 02:24:55,651 | INFO     | pgrp: 3577706
[2025-11-26 21:25:28] 2025-11-27 02:24:55,651 | INFO     | corecount: 9
[2025-11-26 21:25:28] 2025-11-27 02:24:55,651 | INFO     | event service: False
[2025-11-26 21:25:28] 2025-11-27 02:24:55,651 | INFO     | sizes: {0: 2283437, 1: 2284122, 2: 2284321, 13: 2284321, 21: 2284639, 24: 2284667, 76738: 2345411, 76739: 2345410, 76745: 2354516, 76768: 2354706}
[2025-11-26 21:25:28] 2025-11-27 02:24:55,651 | INFO     | --------------------------------------------------
[2025-11-26 21:25:28] 2025-11-27 02:24:55,651 | INFO     | 
[2025-11-26 21:25:28] 2025-11-27 02:24:55,651 | INFO     | executing command: ls -lF /tmp/boinchome/slots/5
[2025-11-26 21:25:28] 2025-11-27 02:24:55,722 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 21:25:28] 2025-11-27 02:24:55,722 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 21:25:28] 2025-11-27 02:24:55,722 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 21:25:28] 2025-11-27 02:24:55,722 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 21:25:28] 2025-11-27 02:24:55,722 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 21:25:28] 2025-11-27 02:24:55,722 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 21:25:28] 2025-11-27 02:24:55,722 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 21:25:28] 2025-11-27 02:24:55,722 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 21:25:28] 2025-11-27 02:24:55,722 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 21:25:28] 2025-11-27 02:24:55,722 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 21:25:28] 2025-11-27 02:24:55,723 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 21:25:28] 2025-11-27 02:24:55,723 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 21:25:28] 2025-11-27 02:24:55,723 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 21:25:28] 2025-11-27 02:24:55,723 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 21:25:28] 2025-11-27 02:24:55,723 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 21:25:28] 2025-11-27 02:24:55,723 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 21:25:28] 2025-11-27 02:24:55,723 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 21:25:28] 2025-11-27 02:24:55,723 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 21:25:28] 2025-11-27 02:24:55,723 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 21:25:28] 2025-11-27 02:24:55,723 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 21:25:28] 2025-11-27 02:24:55,723 | INFO     | job 6897394928 has completed (purged errors)
[2025-11-26 21:25:28] 2025-11-27 02:24:55,723 | INFO     | overall cleanup function is called
[2025-11-26 21:25:28] 2025-11-27 02:24:56,739 | INFO     | --- collectZombieJob: --- 10, [3577706]
[2025-11-26 21:25:28] 2025-11-27 02:24:56,739 | INFO     | zombie collector waiting for pid 3577706
[2025-11-26 21:25:28] 2025-11-27 02:24:56,739 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 21:25:28] 2025-11-27 02:24:56,739 | INFO     | collected zombie processes
[2025-11-26 21:25:28] 2025-11-27 02:24:56,739 | INFO     | will attempt to kill all subprocesses of pid=3577706
[2025-11-26 21:25:28] 2025-11-27 02:24:57,072 | INFO     | process IDs to be killed: [3577706] (in reverse order)
[2025-11-26 21:25:28] 2025-11-27 02:24:57,171 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 21:25:28] 2025-11-27 02:24:57,171 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 21:25:28] 2025-11-27 02:24:57,182 | INFO     | did not find any defunct processes belonging to 3577706
[2025-11-26 21:25:28] 2025-11-27 02:24:57,194 | INFO     | did not find any defunct processes belonging to 3577706
[2025-11-26 21:25:28] 2025-11-27 02:24:57,195 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 21:25:28] 2025-11-27 02:24:57,195 | INFO     | ready for new job
[2025-11-26 21:25:28] 2025-11-27 02:24:57,195 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 21:25:28] 2025-11-27 02:24:57,201 | INFO     | ***************************************
[2025-11-26 21:25:28] 2025-11-27 02:24:57,201 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 21:25:28] 2025-11-27 02:24:57,201 | INFO     | ***************************************
[2025-11-26 21:25:28] 2025-11-27 02:24:57,201 | INFO     | 
[2025-11-26 21:25:28] 2025-11-27 02:24:57,204 | INFO     | architecture information:
[2025-11-26 21:25:28] 2025-11-27 02:24:57,205 | INFO     | executing command: cat /etc/os-release
[2025-11-26 21:25:28] 2025-11-27 02:24:57,241 | INFO     | cat /etc/os-release:
[2025-11-26 21:25:28] NAME="CentOS Linux"
[2025-11-26 21:25:28] VERSION="7 (Core)"
[2025-11-26 21:25:28] ID="centos"
[2025-11-26 21:25:28] ID_LIKE="rhel fedora"
[2025-11-26 21:25:28] VERSION_ID="7"
[2025-11-26 21:25:28] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 21:25:28] ANSI_COLOR="0;31"
[2025-11-26 21:25:28] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 21:25:28] HOME_URL="https://www.centos.org/"
[2025-11-26 21:25:28] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 21:25:28] 
[2025-11-26 21:25:28] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 21:25:28] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 21:25:28] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 21:25:28] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 21:25:28] 
[2025-11-26 21:25:28] 2025-11-27 02:24:57,241 | INFO     | ***************************************
[2025-11-26 21:25:28] 2025-11-27 02:24:57,750 | INFO     | executing command: df -mP /tmp/boinchome/slots/5
[2025-11-26 21:25:28] 2025-11-27 02:24:57,826 | INFO     | sufficient remaining disk space (71013761024 B)
[2025-11-26 21:25:28] 2025-11-27 02:24:57,826 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 21:25:28] 2025-11-27 02:24:57,827 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 21:25:28] 2025-11-27 02:24:57,827 | INFO     | update_server=False
[2025-11-26 21:25:28] 2025-11-27 02:24:57,827 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 21:25:28] 2025-11-27 02:24:57,827 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 21:25:28] 2025-11-27 02:24:57,841 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-26 21:25:28] 2025-11-27 02:24:57,841 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-26 21:25:28] 2025-11-27 02:24:57,841 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 21:25:28] 2025-11-27 02:24:57,841 | INFO     | will abort loop
[2025-11-26 21:25:28] 2025-11-27 02:24:58,187 | INFO     | all payload control threads have been joined
[2025-11-26 21:25:28] 2025-11-27 02:24:58,323 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 21:25:28] 2025-11-27 02:24:58,500 | INFO     | all job control threads have been joined
[2025-11-26 21:25:28] 2025-11-27 02:24:58,832 | INFO     | [job] retrieve thread has finished
[2025-11-26 21:25:28] 2025-11-27 02:24:58,846 | INFO     | [job] job monitor thread has finished
[2025-11-26 21:25:28] 2025-11-27 02:24:58,913 | INFO     | all data control threads have been joined
[2025-11-26 21:25:28] 2025-11-27 02:24:59,060 | INFO     | [payload] failed_post thread has finished
[2025-11-26 21:25:28] 2025-11-27 02:24:59,098 | INFO     | [job] validate thread has finished
[2025-11-26 21:25:28] 2025-11-27 02:24:59,193 | INFO     | [payload] control thread has finished
[2025-11-26 21:25:28] 2025-11-27 02:24:59,222 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 21:25:28] 2025-11-27 02:24:59,507 | INFO     | [job] control thread has finished
[2025-11-26 21:25:28] 2025-11-27 02:24:59,620 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 21:25:28] 2025-11-27 02:24:59,720 | INFO     | [data] copytool_in thread has finished
[2025-11-26 21:25:28] 2025-11-27 02:24:59,918 | INFO     | [data] control thread has finished
[2025-11-26 21:25:28] 2025-11-27 02:25:00,028 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 21:25:28] 2025-11-27 02:25:00,036 | INFO     | [payload] validate_post thread has finished
[2025-11-26 21:25:28] 2025-11-27 02:25:00,330 | INFO     | [data] copytool_out thread has finished
[2025-11-26 21:25:28] 2025-11-27 02:25:00,331 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 21:25:28] 2025-11-27 02:25:00,674 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 21:25:28] 2025-11-27 02:25:01,681 | INFO     | [job] queue monitor thread has finished
[2025-11-26 21:25:28] 2025-11-27 02:25:01,836 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 21:25:28] 2025-11-27 02:25:03,653 | INFO     | [monitor] cgroup control has ended
[2025-11-26 21:25:28] 2025-11-27 02:25:05,454 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139724063950656)>', '<ExcThread(monitor, started 139723708282624)>']
[2025-11-26 21:25:28] 2025-11-27 02:25:10,484 | INFO     | all workflow threads have been joined
[2025-11-26 21:25:28] 2025-11-27 02:25:10,485 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 21:25:28] 2025-11-27 02:25:10,485 | INFO     | traces error code: 0
[2025-11-26 21:25:28] 2025-11-27 02:25:10,485 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 21:25:28] 2025-11-27 02:25:27,843 | INFO     | PID=3560453 has CPU usage=2.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-26 21:25:28] 2025-11-27 02:25:27,844 | INFO     | .. there are 17 such processes running
[2025-11-26 21:25:28] 2025-11-27 02:25:27,845 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 21:25:28] 2025-11-27 02:25:27,845 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 21:25:28] 2025-11-27 02:25:27,845 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 21:25:28] 2025-11-27 02:25:27,845 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 21:25:28] 2025-11-27 02:25:27,845 | INFO     | [monitor] control thread has ended
[2025-11-26 21:25:28] 2025-11-27 02:25:28,061 [wrapper] ==== pilot stdout END ====
[2025-11-26 21:25:28] 2025-11-27 02:25:28,075 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 21:25:28] 2025-11-27 02:25:28,090 [wrapper] pilotpid: 3560453
[2025-11-26 21:25:28] 2025-11-27 02:25:28,106 [wrapper] Pilot exit status: 0
[2025-11-26 21:25:28] 2025-11-27 02:25:28,176 [wrapper] pandaids: 6897394928
[2025-11-26 21:25:28] 2025-11-27 02:25:28,255 [wrapper] cleanup supervisor_pilot 2745362 3560454
[2025-11-26 21:25:28] 2025-11-27 02:25:28,259 [wrapper] Test setup, not cleaning
[2025-11-26 21:25:28] 2025-11-27 02:25:28,262 [wrapper] apfmon messages muted
[2025-11-26 21:25:28] 2025-11-27 02:25:28,265 [wrapper] ==== wrapper stdout END ====
[2025-11-26 21:25:28] 2025-11-27 02:25:28,267 [wrapper] ==== wrapper stderr END ====
[2025-11-26 21:25:28]  *** Error codes and diagnostics ***
[2025-11-26 21:25:28]     "exeErrorCode": 0,
[2025-11-26 21:25:28]     "exeErrorDiag": "",
[2025-11-26 21:25:28]     "pilotErrorCode": 0,
[2025-11-26 21:25:28]     "pilotErrorDiag": "",
[2025-11-26 21:25:28]  *** Listing of results directory ***
[2025-11-26 21:25:28] total 1313612
[2025-11-26 21:25:28] -rw-r--r--. 1 boincer umatlas    576529 Nov 25 11:48 pilot3.tar.gz
[2025-11-26 21:25:28] -rw-r--r--. 1 boincer umatlas      5112 Nov 25 11:55 queuedata.json
[2025-11-26 21:25:28] -rwx------. 1 boincer umatlas     36292 Nov 25 11:56 runpilot2-wrapper.sh
[2025-11-26 21:25:28] -rw-r--r--. 1 boincer umatlas       100 Nov 26 00:03 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 21:25:28] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 26 00:03 run_atlas
[2025-11-26 21:25:28] -rw-r--r--. 1 boincer umatlas       105 Nov 26 00:03 job.xml
[2025-11-26 21:25:28] -rw-r--r--. 2 boincer umatlas 408796449 Nov 26 00:03 EVNT.47483658._002242.pool.root.1
[2025-11-26 21:25:28] drwxrwx--x. 2 boincer umatlas      4096 Nov 26 00:03 shared
[2025-11-26 21:25:28] -rw-r--r--. 2 boincer umatlas    590111 Nov 26 00:03 input.tar.gz
[2025-11-26 21:25:28] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 00:03 start_atlas.sh
[2025-11-26 21:25:28] -rw-r--r--. 1 boincer umatlas         0 Nov 26 00:03 boinc_lockfile
[2025-11-26 21:25:28] -rw-r--r--. 1 boincer umatlas      2786 Nov 26 00:04 pandaJob.out
[2025-11-26 21:25:28] -rw-------. 1 boincer umatlas        57 Nov 26 00:04 setup.sh.local
[2025-11-26 21:25:28] -rw-------. 1 boincer umatlas    991877 Nov 26 00:04 agis_schedconf.cvmfs.json
[2025-11-26 21:25:28] drwx------. 5 boincer umatlas      4096 Nov 26 00:04 pilot3
[2025-11-26 21:25:28] -rw-r--r--. 1 boincer umatlas       533 Nov 26 21:11 boinc_task_state.xml
[2025-11-26 21:25:28] -rw-r--r--. 1 boincer umatlas      6842 Nov 26 21:18 init_data.xml
[2025-11-26 21:25:28] -rw-------. 1 boincer umatlas 907535215 Nov 26 21:22 HITS.47556161._002260.pool.root.1
[2025-11-26 21:25:28] -rw-------. 1 boincer umatlas      1060 Nov 26 21:24 memory_monitor_summary.json
[2025-11-26 21:25:28] -rw-------. 1 boincer umatlas   1516240 Nov 26 21:24 agis_ddmendpoints.agis.ALL.json
[2025-11-26 21:25:28] -rw-------. 1 boincer umatlas   2478439 Nov 26 21:24 log.47556161._002260.job.log.tgz.1
[2025-11-26 21:25:28] -rw-------. 1 boincer umatlas      8621 Nov 26 21:24 heartbeat.json
[2025-11-26 21:25:28] -rw-r--r--. 1 boincer umatlas        29 Nov 26 21:25 wrapper_checkpoint.txt
[2025-11-26 21:25:28] -rw-------. 1 boincer umatlas       823 Nov 26 21:25 pilotlog.txt
[2025-11-26 21:25:28] -rw-------. 1 boincer umatlas        95 Nov 26 21:25 pilot_heartbeat.json
[2025-11-26 21:25:28] -rw-------. 1 boincer umatlas   9962615 Nov 26 21:25 log.47556161._002260.job.log.1
[2025-11-26 21:25:28] -rw-------. 1 boincer umatlas       353 Nov 26 21:25 output.list
[2025-11-26 21:25:28] -rw-r--r--. 1 boincer umatlas       620 Nov 26 21:25 runtime_log
[2025-11-26 21:25:28] -rw-------. 1 boincer umatlas  12462080 Nov 26 21:25 result.tar.gz
[2025-11-26 21:25:28] -rw-r--r--. 1 boincer umatlas      8192 Nov 26 21:25 boinc_mmap_file
[2025-11-26 21:25:28] -rw-r--r--. 1 boincer umatlas      9353 Nov 26 21:25 runtime_log.err
[2025-11-26 21:25:28] -rw-------. 1 boincer umatlas       662 Nov 26 21:25 G8fNDmzVBi8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmfRMKDm5mH4im.diag
[2025-11-26 21:25:28] -rw-r--r--. 1 boincer umatlas     21380 Nov 26 21:25 stderr.txt
[2025-11-26 21:25:28] HITS file was successfully produced:
[2025-11-26 21:25:28] -rw-------. 1 boincer umatlas 907535215 Nov 26 21:22 shared/HITS.pool.root.1
[2025-11-26 21:25:28]  *** Contents of shared directory: ***
[2025-11-26 21:25:28] total 1298260
[2025-11-26 21:25:28] -rw-r--r--. 2 boincer umatlas 408796449 Nov 26 00:03 ATLAS.root_0
[2025-11-26 21:25:28] -rw-r--r--. 2 boincer umatlas    590111 Nov 26 00:03 input.tar.gz
[2025-11-26 21:25:28] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 00:03 start_atlas.sh
[2025-11-26 21:25:28] -rw-------. 1 boincer umatlas 907535215 Nov 26 21:22 HITS.pool.root.1
[2025-11-26 21:25:28] -rw-------. 1 boincer umatlas  12462080 Nov 26 21:25 result.tar.gz
21:25:30 (3550580): run_atlas exited; CPU time 237072.777266
21:25:30 (3550580): called boinc_finish(0)

</stderr_txt>
]]>

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