Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
21:20:43 (5060): wrapper (7.7.26015): starting
21:20:43 (5060): wrapper: running run_atlas (--nthreads 8)
[2025-11-25 21:20:43] Arguments: --nthreads 8
[2025-11-25 21:20:43] Threads: 8
[2025-11-25 21:20:43] Checking for CVMFS
[2025-11-25 21:20:43] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 21:20:43] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 21:20:43] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 21:20:43] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 21:20:43] 2.11.4.0 5420 117056 69908 153305 2 81 13189753 18432001 1885 130560 0 82633178 99.973 4970650 31852 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-25 21:20:43] CVMFS is ok
[2025-11-25 21:20:43] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 21:20:43] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 21:20:43] Further information can be found at the LHC@home message board.
[2025-11-25 21:20:43] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 21:20:43] Checking for apptainer binary...
[2025-11-25 21:20:43] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 21:20:43] Running /usr/bin/apptainer --version
[2025-11-25 21:20:43] apptainer version 1.3.2-1.el7
[2025-11-25 21:20:43] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 21:20:44] c-206-22.aglt2.org
[2025-11-25 21:20:44] apptainer works
[2025-11-25 21:20:44] Set ATHENA_PROC_NUMBER=8
[2025-11-25 21:20:44] Set ATHENA_CORE_NUMBER=8
[2025-11-25 21:20:44] Starting ATLAS job with PandaID=6897394914
[2025-11-25 21:20:44] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 16:17:18]  *** The last 200 lines of the pilot log: ***
[2025-11-26 16:17:18] 2025-11-26 21:16:44,940 | INFO     | time since job start (68148s) is within the limit (172800.0s)
[2025-11-26 16:17:18] 2025-11-26 21:16:45,824 | INFO     | CPU arch script returned: x86-64-v2
[2025-11-26 16:17:18] 2025-11-26 21:16:45,827 | INFO     | found 12 cores (6 cores per socket, 2 sockets) HT, CPU MHz: 2405.7916666666665
[2025-11-26 16:17:18] 2025-11-26 21:16:45,830 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6897394914/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 16:17:18] 2025-11-26 21:16:45,830 | INFO     | extracted standard info from prmon json
[2025-11-26 16:17:18] 2025-11-26 21:16:45,831 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 16:17:18] 2025-11-26 21:16:45,831 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 16:17:18] 2025-11-26 21:16:45,845 | INFO     | fitting pss+swap vs Time
[2025-11-26 16:17:18] 2025-11-26 21:16:45,846 | INFO     | sum of square deviations: 432154632278.92584
[2025-11-26 16:17:18] 2025-11-26 21:16:45,868 | INFO     | sum of deviations: 2086499094828.7385
[2025-11-26 16:17:18] 2025-11-26 21:16:45,868 | INFO     | mean x: 1764157722.5622203
[2025-11-26 16:17:18] 2025-11-26 21:16:45,868 | INFO     | mean y: 2871218.752014324
[2025-11-26 16:17:18] 2025-11-26 21:16:45,868 | INFO     | intersect: -8514713035.407796
[2025-11-26 16:17:18] 2025-11-26 21:16:45,869 | INFO     | chi2: 5.174951810997072
[2025-11-26 16:17:18] 2025-11-26 21:16:45,870 | INFO     | sum of square deviations: 426377450377.3376
[2025-11-26 16:17:18] 2025-11-26 21:16:45,909 | INFO     | sum of deviations: 2431756464244.8726
[2025-11-26 16:17:18] 2025-11-26 21:16:45,909 | INFO     | mean x: 1764157570.0647483
[2025-11-26 16:17:18] 2025-11-26 21:16:45,909 | INFO     | mean y: 2880327.5017985613
[2025-11-26 16:17:18] 2025-11-26 21:16:45,909 | INFO     | intersect: -10058631066.111752
[2025-11-26 16:17:18] 2025-11-26 21:16:45,911 | INFO     | chi2: 2.3843539399092424
[2025-11-26 16:17:18] 2025-11-26 21:16:45,911 | INFO     | current chi2=2.3843539399092424 (change=53.92509868705729 %)
[2025-11-26 16:17:18] 2025-11-26 21:16:45,913 | INFO     | sum of square deviations: 420651990375.7382
[2025-11-26 16:17:18] 2025-11-26 21:16:45,954 | INFO     | sum of deviations: 2474580771891.989
[2025-11-26 16:17:18] 2025-11-26 21:16:45,955 | INFO     | mean x: 1764157417.567299
[2025-11-26 16:17:18] 2025-11-26 21:16:45,955 | INFO     | mean y: 2881465.590785908
[2025-11-26 16:17:18] 2025-11-26 21:16:45,955 | INFO     | intersect: -10375174799.406872
[2025-11-26 16:17:18] 2025-11-26 21:16:45,957 | INFO     | chi2: 2.2459848789787147
[2025-11-26 16:17:18] 2025-11-26 21:16:45,957 | INFO     | current chi2=2.2459848789787147 (change=5.803209775801765 %)
[2025-11-26 16:17:18] 2025-11-26 21:16:45,957 | INFO     | right removable region: 1106
[2025-11-26 16:17:18] 2025-11-26 21:16:45,959 | INFO     | sum of square deviations: 426377135190.4665
[2025-11-26 16:17:18] 2025-11-26 21:16:46,005 | INFO     | sum of deviations: 1799743954358.7021
[2025-11-26 16:17:18] 2025-11-26 21:16:46,007 | INFO     | mean x: 1764157875.063849
[2025-11-26 16:17:18] 2025-11-26 21:16:46,007 | INFO     | mean y: 2878779.0746402876
[2025-11-26 16:17:18] 2025-11-26 21:16:46,007 | INFO     | intersect: -7443656712.942635
[2025-11-26 16:17:18] 2025-11-26 21:16:46,008 | INFO     | chi2: 3.187774299312076
[2025-11-26 16:17:18] 2025-11-26 21:16:46,008 | INFO     | current chi2=3.187774299312076 (change=38.399923018841044 %)
[2025-11-26 16:17:18] 2025-11-26 21:16:46,010 | INFO     | sum of square deviations: 420651427834.13153
[2025-11-26 16:17:18] 2025-11-26 21:16:46,031 | INFO     | sum of deviations: 1724807606641.147
[2025-11-26 16:17:18] 2025-11-26 21:16:46,031 | INFO     | mean x: 1764158027.564589
[2025-11-26 16:17:18] 2025-11-26 21:16:46,032 | INFO     | mean y: 2880774.5853658537
[2025-11-26 16:17:18] 2025-11-26 21:16:46,032 | INFO     | intersect: -7230740660.928398
[2025-11-26 16:17:18] 2025-11-26 21:16:46,033 | INFO     | chi2: 3.1325397552832994
[2025-11-26 16:17:18] 2025-11-26 21:16:46,033 | INFO     | current chi2=3.1325397552832994 (change=1.7326993332211869 %)
[2025-11-26 16:17:18] 2025-11-26 21:16:46,033 | INFO     | left removable region: 20
[2025-11-26 16:17:18] 2025-11-26 21:16:46,034 | INFO     | sum of square deviations: 397163552562.3986
[2025-11-26 16:17:18] 2025-11-26 21:16:46,055 | INFO     | sum of deviations: 2018750887820.797
[2025-11-26 16:17:18] 2025-11-26 21:16:46,055 | INFO     | mean x: 1764157997.0718231
[2025-11-26 16:17:18] 2025-11-26 21:16:46,055 | INFO     | mean y: 2893886.6307550645
[2025-11-26 16:17:18] 2025-11-26 21:16:46,056 | INFO     | intersect: -8964181515.60009
[2025-11-26 16:17:18] 2025-11-26 21:16:46,057 | INFO     | chi2: 0.16624030183912505
[2025-11-26 16:17:18] 2025-11-26 21:16:46,057 | INFO     | current memory leak: 5.08 B/s (using 1086 data points, chi2=0.17)
[2025-11-26 16:17:18] 2025-11-26 21:16:46,058 | INFO     | could have reported an average CPU frequency of 2626 MHz (41 samples)
[2025-11-26 16:17:18] 2025-11-26 21:16:46,058 | INFO     | ..............................
[2025-11-26 16:17:18] 2025-11-26 21:16:46,058 | INFO     | . Timing measurements:
[2025-11-26 16:17:18] 2025-11-26 21:16:46,058 | INFO     | . get job = 0 s
[2025-11-26 16:17:18] 2025-11-26 21:16:46,059 | INFO     | . initial setup = 2 s
[2025-11-26 16:17:18] 2025-11-26 21:16:46,059 | INFO     | . payload setup = 5 s
[2025-11-26 16:17:18] 2025-11-26 21:16:46,059 | INFO     | . stage-in = 0 s
[2025-11-26 16:17:18] 2025-11-26 21:16:46,059 | INFO     | . payload execution = 68114 s
[2025-11-26 16:17:18] 2025-11-26 21:16:46,059 | INFO     | . stage-out = 3 s
[2025-11-26 16:17:18] 2025-11-26 21:16:46,059 | INFO     | . log creation = 0 s
[2025-11-26 16:17:18] 2025-11-26 21:16:46,059 | INFO     | ..............................
[2025-11-26 16:17:18] 2025-11-26 21:16:46,321 | INFO     | PID=8773 has CPU usage=18.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-26 16:17:18] 2025-11-26 21:16:46,321 | INFO     | .. there are 3 such processes running
[2025-11-26 16:17:18] 2025-11-26 21:16:46,477 | INFO     | 
[2025-11-26 16:17:18] 2025-11-26 21:16:46,478 | INFO     | job summary report
[2025-11-26 16:17:18] 2025-11-26 21:16:46,478 | INFO     | --------------------------------------------------
[2025-11-26 16:17:18] 2025-11-26 21:16:46,478 | INFO     | PanDA job id: 6897394914
[2025-11-26 16:17:18] 2025-11-26 21:16:46,478 | INFO     | task id: 47556161
[2025-11-26 16:17:18] 2025-11-26 21:16:46,478 | INFO     | errors: (none)
[2025-11-26 16:17:18] 2025-11-26 21:16:46,479 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 16:17:18] 2025-11-26 21:16:46,479 | INFO     | pilot state: finished 
[2025-11-26 16:17:18] 2025-11-26 21:16:46,479 | INFO     | transexitcode: 0
[2025-11-26 16:17:18] 2025-11-26 21:16:46,479 | INFO     | exeerrorcode: 0
[2025-11-26 16:17:18] 2025-11-26 21:16:46,479 | INFO     | exeerrordiag: 
[2025-11-26 16:17:18] 2025-11-26 21:16:46,479 | INFO     | exitcode: 0
[2025-11-26 16:17:18] 2025-11-26 21:16:46,479 | INFO     | exitmsg: OK
[2025-11-26 16:17:18] 2025-11-26 21:16:46,480 | INFO     | cpuconsumptiontime: 532092 s
[2025-11-26 16:17:18] 2025-11-26 21:16:46,480 | INFO     | nevents: 1000
[2025-11-26 16:17:18] 2025-11-26 21:16:46,480 | INFO     | neventsw: 0
[2025-11-26 16:17:18] 2025-11-26 21:16:46,480 | INFO     | pid: 16048
[2025-11-26 16:17:18] 2025-11-26 21:16:46,480 | INFO     | pgrp: 16048
[2025-11-26 16:17:18] 2025-11-26 21:16:46,480 | INFO     | corecount: 8
[2025-11-26 16:17:18] 2025-11-26 21:16:46,480 | INFO     | event service: False
[2025-11-26 16:17:18] 2025-11-26 21:16:46,481 | INFO     | sizes: {0: 2284265, 1: 2284265, 4: 2284555, 12: 2284583, 68124: 2340421, 68129: 2349599, 68134: 2349885}
[2025-11-26 16:17:18] 2025-11-26 21:16:46,481 | INFO     | --------------------------------------------------
[2025-11-26 16:17:18] 2025-11-26 21:16:46,481 | INFO     | 
[2025-11-26 16:17:18] 2025-11-26 21:16:46,481 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-11-26 16:17:18] 2025-11-26 21:16:46,500 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 16:17:18] 2025-11-26 21:16:46,500 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 16:17:18] 2025-11-26 21:16:46,501 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 16:17:18] 2025-11-26 21:16:46,501 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 16:17:18] 2025-11-26 21:16:46,501 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 16:17:18] 2025-11-26 21:16:46,501 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 16:17:18] 2025-11-26 21:16:46,501 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 16:17:18] 2025-11-26 21:16:46,501 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 16:17:18] 2025-11-26 21:16:46,502 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 16:17:18] 2025-11-26 21:16:46,502 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 16:17:18] 2025-11-26 21:16:46,502 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 16:17:18] 2025-11-26 21:16:46,502 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 16:17:18] 2025-11-26 21:16:46,502 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 16:17:18] 2025-11-26 21:16:46,502 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 16:17:18] 2025-11-26 21:16:46,503 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 16:17:18] 2025-11-26 21:16:46,503 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 16:17:18] 2025-11-26 21:16:46,503 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 16:17:18] 2025-11-26 21:16:46,503 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 16:17:18] 2025-11-26 21:16:46,503 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 16:17:18] 2025-11-26 21:16:46,503 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 16:17:18] 2025-11-26 21:16:46,504 | INFO     | job 6897394914 has completed (purged errors)
[2025-11-26 16:17:18] 2025-11-26 21:16:46,504 | INFO     | overall cleanup function is called
[2025-11-26 16:17:18] 2025-11-26 21:16:47,520 | INFO     | --- collectZombieJob: --- 10, [16048]
[2025-11-26 16:17:18] 2025-11-26 21:16:47,520 | INFO     | zombie collector waiting for pid 16048
[2025-11-26 16:17:18] 2025-11-26 21:16:47,521 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 16:17:18] 2025-11-26 21:16:47,521 | INFO     | collected zombie processes
[2025-11-26 16:17:18] 2025-11-26 21:16:47,521 | INFO     | will attempt to kill all subprocesses of pid=16048
[2025-11-26 16:17:18] 2025-11-26 21:16:47,689 | INFO     | process IDs to be killed: [16048] (in reverse order)
[2025-11-26 16:17:18] 2025-11-26 21:16:47,747 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 16:17:18] 2025-11-26 21:16:47,748 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 16:17:18] 2025-11-26 21:16:47,754 | INFO     | did not find any defunct processes belonging to 16048
[2025-11-26 16:17:18] 2025-11-26 21:16:47,759 | INFO     | did not find any defunct processes belonging to 16048
[2025-11-26 16:17:18] 2025-11-26 21:16:47,761 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 16:17:18] 2025-11-26 21:16:47,761 | INFO     | ready for new job
[2025-11-26 16:17:18] 2025-11-26 21:16:47,761 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 16:17:18] 2025-11-26 21:16:47,766 | INFO     | ***************************************
[2025-11-26 16:17:18] 2025-11-26 21:16:47,767 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 16:17:18] 2025-11-26 21:16:47,767 | INFO     | ***************************************
[2025-11-26 16:17:18] 2025-11-26 21:16:47,767 | INFO     | 
[2025-11-26 16:17:18] 2025-11-26 21:16:47,768 | INFO     | architecture information:
[2025-11-26 16:17:18] 2025-11-26 21:16:47,769 | INFO     | executing command: cat /etc/os-release
[2025-11-26 16:17:18] 2025-11-26 21:16:47,783 | INFO     | cat /etc/os-release:
[2025-11-26 16:17:18] NAME="CentOS Linux"
[2025-11-26 16:17:18] VERSION="7 (Core)"
[2025-11-26 16:17:18] ID="centos"
[2025-11-26 16:17:18] ID_LIKE="rhel fedora"
[2025-11-26 16:17:18] VERSION_ID="7"
[2025-11-26 16:17:18] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 16:17:18] ANSI_COLOR="0;31"
[2025-11-26 16:17:18] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 16:17:18] HOME_URL="https://www.centos.org/"
[2025-11-26 16:17:18] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 16:17:18] 
[2025-11-26 16:17:18] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 16:17:18] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 16:17:18] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 16:17:18] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 16:17:18] 
[2025-11-26 16:17:18] 2025-11-26 21:16:47,784 | INFO     | ***************************************
[2025-11-26 16:17:18] 2025-11-26 21:16:48,286 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-11-26 16:17:18] 2025-11-26 21:16:48,311 | INFO     | sufficient remaining disk space (25028460544 B)
[2025-11-26 16:17:18] 2025-11-26 21:16:48,312 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 16:17:18] 2025-11-26 21:16:48,312 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 16:17:18] 2025-11-26 21:16:48,312 | INFO     | update_server=False
[2025-11-26 16:17:18] 2025-11-26 21:16:48,312 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 16:17:18] 2025-11-26 21:16:48,313 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 16:17:18] 2025-11-26 21:16:48,313 | INFO     | aborting loop
[2025-11-26 16:17:18] 2025-11-26 21:16:48,451 | INFO     | all data control threads have been joined
[2025-11-26 16:17:18] 2025-11-26 21:16:48,971 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 16:17:18] 2025-11-26 21:16:49,061 | INFO     | [monitor] cgroup control has ended
[2025-11-26 16:17:18] 2025-11-26 21:16:49,169 | INFO     | all job control threads have been joined
[2025-11-26 16:17:18] 2025-11-26 21:16:49,319 | INFO     | [job] retrieve thread has finished
[2025-11-26 16:17:18] 2025-11-26 21:16:49,319 | INFO     | [job] job monitor thread has finished
[2025-11-26 16:17:18] 2025-11-26 21:16:49,459 | INFO     | [data] control thread has finished
[2025-11-26 16:17:18] 2025-11-26 21:16:49,544 | INFO     | [payload] failed_post thread has finished
[2025-11-26 16:17:18] 2025-11-26 21:16:49,751 | INFO     | all payload control threads have been joined
[2025-11-26 16:17:18] 2025-11-26 21:16:49,802 | INFO     | [data] copytool_in thread has finished
[2025-11-26 16:17:18] 2025-11-26 21:16:49,911 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 16:17:18] 2025-11-26 21:16:49,919 | INFO     | [payload] validate_post thread has finished
[2025-11-26 16:17:18] 2025-11-26 21:16:50,065 | INFO     | [job] validate thread has finished
[2025-11-26 16:17:18] 2025-11-26 21:16:50,175 | INFO     | [job] control thread has finished
[2025-11-26 16:17:18] 2025-11-26 21:16:50,418 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 16:17:18] 2025-11-26 21:16:50,730 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 16:17:18] 2025-11-26 21:16:50,753 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 16:17:18] 2025-11-26 21:16:50,757 | INFO     | [payload] control thread has finished
[2025-11-26 16:17:18] 2025-11-26 21:16:50,978 | INFO     | [data] copytool_out thread has finished
[2025-11-26 16:17:18] 2025-11-26 21:16:51,169 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 16:17:18] 2025-11-26 21:16:51,627 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 16:17:18] 2025-11-26 21:16:52,174 | INFO     | [job] queue monitor thread has finished
[2025-11-26 16:17:18] 2025-11-26 21:16:55,635 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 16:17:18] 2025-11-26 21:16:56,496 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140611182040896)>', '<ExcThread(monitor, started 140610879072000)>']
[2025-11-26 16:17:18] 2025-11-26 21:17:01,513 | INFO     | all workflow threads have been joined
[2025-11-26 16:17:18] 2025-11-26 21:17:01,513 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 16:17:18] 2025-11-26 21:17:01,514 | INFO     | traces error code: 0
[2025-11-26 16:17:18] 2025-11-26 21:17:01,514 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 16:17:18] 2025-11-26 21:17:18,547 | INFO     | PID=8773 has CPU usage=1.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-11-26 16:17:18] 2025-11-26 21:17:18,547 | INFO     | .. there are 3 such processes running
[2025-11-26 16:17:18] 2025-11-26 21:17:18,547 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 16:17:18] 2025-11-26 21:17:18,548 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 16:17:18] 2025-11-26 21:17:18,548 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 16:17:18] 2025-11-26 21:17:18,548 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 16:17:18] 2025-11-26 21:17:18,548 | INFO     | [monitor] control thread has ended
[2025-11-26 16:17:18] 2025-11-26 21:17:18,644 [wrapper] ==== pilot stdout END ====
[2025-11-26 16:17:18] 2025-11-26 21:17:18,647 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 16:17:18] 2025-11-26 21:17:18,649 [wrapper] pilotpid: 8773
[2025-11-26 16:17:18] 2025-11-26 21:17:18,651 [wrapper] Pilot exit status: 0
[2025-11-26 16:17:18] 2025-11-26 21:17:18,661 [wrapper] pandaids: 6897394914
[2025-11-26 16:17:18] 2025-11-26 21:17:18,701 [wrapper] cleanup supervisor_pilot 19789 8774
[2025-11-26 16:17:18] 2025-11-26 21:17:18,704 [wrapper] Test setup, not cleaning
[2025-11-26 16:17:18] 2025-11-26 21:17:18,706 [wrapper] apfmon messages muted
[2025-11-26 16:17:18] 2025-11-26 21:17:18,708 [wrapper] ==== wrapper stdout END ====
[2025-11-26 16:17:18] 2025-11-26 21:17:18,710 [wrapper] ==== wrapper stderr END ====
[2025-11-26 16:17:18]  *** Error codes and diagnostics ***
[2025-11-26 16:17:18]     "exeErrorCode": 0,
[2025-11-26 16:17:18]     "exeErrorDiag": "",
[2025-11-26 16:17:18]     "pilotErrorCode": 0,
[2025-11-26 16:17:18]     "pilotErrorDiag": "",
[2025-11-26 16:17:18]  *** Listing of results directory ***
[2025-11-26 16:17:18] total 1321856
[2025-11-26 16:17:18] -rw-r--r-- 1 boincer umatlas    576529 Nov 25 11:48 pilot3.tar.gz
[2025-11-26 16:17:18] -rw-r--r-- 1 boincer umatlas      5112 Nov 25 11:55 queuedata.json
[2025-11-26 16:17:18] -rwx------ 1 boincer umatlas     36292 Nov 25 11:56 runpilot2-wrapper.sh
[2025-11-26 16:17:18] -rw-r--r-- 1 boincer umatlas       100 Nov 25 21:20 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 16:17:18] -rwxr-xr-x 1 boincer umatlas      7986 Nov 25 21:20 run_atlas
[2025-11-26 16:17:18] -rw-r--r-- 1 boincer umatlas       105 Nov 25 21:20 job.xml
[2025-11-26 16:17:18] -rw-r--r-- 2 boincer umatlas 410849235 Nov 25 21:20 EVNT.47483658._002241.pool.root.1
[2025-11-26 16:17:18] -rw-r--r-- 2 boincer umatlas     15847 Nov 25 21:20 start_atlas.sh
[2025-11-26 16:17:18] drwxrwx--x 2 boincer umatlas      4096 Nov 25 21:20 shared
[2025-11-26 16:17:18] -rw-r--r-- 2 boincer umatlas    590106 Nov 25 21:20 input.tar.gz
[2025-11-26 16:17:18] -rw-r--r-- 1 boincer umatlas         0 Nov 25 21:20 boinc_lockfile
[2025-11-26 16:17:18] -rw-r--r-- 1 boincer umatlas      2786 Nov 25 21:20 pandaJob.out
[2025-11-26 16:17:18] -rw------- 1 boincer umatlas        57 Nov 25 21:20 setup.sh.local
[2025-11-26 16:17:18] -rw------- 1 boincer umatlas    991877 Nov 25 21:20 agis_schedconf.cvmfs.json
[2025-11-26 16:17:18] drwx------ 5 boincer umatlas      4096 Nov 25 21:20 pilot3
[2025-11-26 16:17:18] -rw-r--r-- 1 boincer umatlas       533 Nov 26 16:05 boinc_task_state.xml
[2025-11-26 16:17:18] -rw-r--r-- 1 boincer umatlas      5952 Nov 26 16:11 init_data.xml
[2025-11-26 16:17:18] -rw------- 1 boincer umatlas 915349412 Nov 26 16:15 HITS.47556161._002246.pool.root.1
[2025-11-26 16:17:18] -rw------- 1 boincer umatlas        95 Nov 26 16:16 pilot_heartbeat.json
[2025-11-26 16:17:18] -rw------- 1 boincer umatlas      1067 Nov 26 16:16 memory_monitor_summary.json
[2025-11-26 16:17:18] -rw------- 1 boincer umatlas   1516240 Nov 26 16:16 agis_ddmendpoints.agis.ALL.json
[2025-11-26 16:17:18] -rw------- 1 boincer umatlas   2298297 Nov 26 16:16 log.47556161._002246.job.log.tgz.1
[2025-11-26 16:17:18] -rw------- 1 boincer umatlas      8680 Nov 26 16:16 heartbeat.json
[2025-11-26 16:17:18] -rw-r--r-- 1 boincer umatlas      8192 Nov 26 16:17 boinc_mmap_file
[2025-11-26 16:17:18] -rw-r--r-- 1 boincer umatlas        29 Nov 26 16:17 wrapper_checkpoint.txt
[2025-11-26 16:17:18] -rw------- 1 boincer umatlas       819 Nov 26 16:17 pilotlog.txt
[2025-11-26 16:17:18] -rw------- 1 boincer umatlas   9436508 Nov 26 16:17 log.47556161._002246.job.log.1
[2025-11-26 16:17:18] -rw------- 1 boincer umatlas       353 Nov 26 16:17 output.list
[2025-11-26 16:17:18] -rw-r--r-- 1 boincer umatlas       620 Nov 26 16:17 runtime_log
[2025-11-26 16:17:18] -rw------- 1 boincer umatlas  11755520 Nov 26 16:17 result.tar.gz
[2025-11-26 16:17:18] -rw-r--r-- 1 boincer umatlas      9343 Nov 26 16:17 runtime_log.err
[2025-11-26 16:17:18] -rw------- 1 boincer umatlas       668 Nov 26 16:17 74UNDmzVBi8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmXRMKDmh2wkUo.diag
[2025-11-26 16:17:18] -rw-r--r-- 1 boincer umatlas     21352 Nov 26 16:17 stderr.txt
[2025-11-26 16:17:18] HITS file was successfully produced:
[2025-11-26 16:17:18] -rw------- 1 boincer umatlas 915349412 Nov 26 16:15 shared/HITS.pool.root.1
[2025-11-26 16:17:18]  *** Contents of shared directory: ***
[2025-11-26 16:17:18] total 1307196
[2025-11-26 16:17:18] -rw-r--r-- 2 boincer umatlas 410849235 Nov 25 21:20 ATLAS.root_0
[2025-11-26 16:17:18] -rw-r--r-- 2 boincer umatlas     15847 Nov 25 21:20 start_atlas.sh
[2025-11-26 16:17:18] -rw-r--r-- 2 boincer umatlas    590106 Nov 25 21:20 input.tar.gz
[2025-11-26 16:17:18] -rw------- 1 boincer umatlas 915349412 Nov 26 16:15 HITS.pool.root.1
[2025-11-26 16:17:18] -rw------- 1 boincer umatlas  11755520 Nov 26 16:17 result.tar.gz
16:17:20 (5060): run_atlas exited; CPU time 531408.540088
16:17:20 (5060): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN