Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
21:01:45 (3358133): wrapper (7.7.26015): starting
21:01:45 (3358133): wrapper: running run_atlas (--nthreads 8)
[2025-11-25 21:01:45] Arguments: --nthreads 8
[2025-11-25 21:01:45] Threads: 8
[2025-11-25 21:01:45] Checking for CVMFS
[2025-11-25 21:01:45] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 21:01:46] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 21:01:46] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 21:01:46] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 21:01:46] 2.13.2.0 11666 33778 296800 153304 2 523 29790045 40960001 19292 16776704 0 57305263 99.766 31868255 37052 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-25 21:01:46] CVMFS is ok
[2025-11-25 21:01:46] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 21:01:46] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 21:01:46] Further information can be found at the LHC@home message board.
[2025-11-25 21:01:46] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 21:01:46] Checking for apptainer binary...
[2025-11-25 21:01:46] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 21:01:46] Running /usr/bin/apptainer --version
[2025-11-25 21:01:47] apptainer version 1.4.4-1.el9
[2025-11-25 21:01:47] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 21:01:47] c-211-33-2.aglt2.org
[2025-11-25 21:01:47] apptainer works
[2025-11-25 21:01:47] Set ATHENA_PROC_NUMBER=8
[2025-11-25 21:01:47] Set ATHENA_CORE_NUMBER=8
[2025-11-25 21:01:47] Starting ATLAS job with PandaID=6897394709
[2025-11-25 21:01:47] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 00:14:07]  *** The last 200 lines of the pilot log: ***
[2025-11-27 00:14:07] 2025-11-27 05:12:46,573 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 00:14:07] 2025-11-27 05:12:46,884 | INFO     | PID=3361821 has CPU usage=14.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-11-27 00:14:07] 2025-11-27 05:12:46,884 | INFO     | .. there are 20 such processes running
[2025-11-27 00:14:07] 2025-11-27 05:12:47,885 | INFO     | time since job start (97842s) is within the limit (172800.0s)
[2025-11-27 00:14:07] 2025-11-27 05:12:49,077 | INFO     | monitor loop #5724: job 0:6897394709 is in state 'finished'
[2025-11-27 00:14:07] 2025-11-27 05:12:49,077 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 00:14:07] 2025-11-27 05:12:49,892 | INFO     | time since job start (97844s) is within the limit (172800.0s)
[2025-11-27 00:14:07] 2025-11-27 05:12:51,582 | INFO     | monitor loop #5725: job 0:6897394709 is in state 'finished'
[2025-11-27 00:14:07] 2025-11-27 05:12:51,582 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 00:14:07] 2025-11-27 05:12:51,899 | INFO     | time since job start (97846s) is within the limit (172800.0s)
[2025-11-27 00:14:07] 2025-11-27 05:12:53,908 | INFO     | time since job start (97848s) is within the limit (172800.0s)
[2025-11-27 00:14:07] 2025-11-27 05:12:54,090 | INFO     | monitor loop #5726: job 0:6897394709 is in state 'finished'
[2025-11-27 00:14:07] 2025-11-27 05:12:54,090 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 00:14:07] 2025-11-27 05:12:55,915 | INFO     | time since job start (97850s) is within the limit (172800.0s)
[2025-11-27 00:14:07] 2025-11-27 05:12:56,595 | INFO     | monitor loop #5727: job 0:6897394709 is in state 'finished'
[2025-11-27 00:14:07] 2025-11-27 05:12:56,595 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 00:14:07] 2025-11-27 05:12:57,370 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-27 00:14:07] 2025-11-27 05:12:57,387 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2598.0457499999998
[2025-11-27 00:14:07] 2025-11-27 05:12:57,417 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6897394709/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 00:14:07] 2025-11-27 05:12:57,418 | INFO     | extracted standard info from prmon json
[2025-11-27 00:14:07] 2025-11-27 05:12:57,418 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 00:14:07] 2025-11-27 05:12:57,418 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 00:14:07] 2025-11-27 05:12:57,583 | INFO     | fitting pss+swap vs Time
[2025-11-27 00:14:07] 2025-11-27 05:12:57,585 | INFO     | sum of square deviations: 1277217917864.0652
[2025-11-27 00:14:07] 2025-11-27 05:12:57,927 | INFO     | sum of deviations: 4073572953688.5557
[2025-11-27 00:14:07] 2025-11-27 05:12:57,927 | INFO     | mean x: 1764171434.205864
[2025-11-27 00:14:07] 2025-11-27 05:12:57,927 | INFO     | mean y: 2897637.0679975045
[2025-11-27 00:14:07] 2025-11-27 05:12:57,927 | INFO     | intersect: -5623770247.508154
[2025-11-27 00:14:07] 2025-11-27 05:12:57,929 | INFO     | chi2: 24.393601479260763
[2025-11-27 00:14:07] 2025-11-27 05:12:57,963 | INFO     | time since job start (97852s) is within the limit (172800.0s)
[2025-11-27 00:14:07] 2025-11-27 05:12:57,965 | INFO     | sum of square deviations: 1265305518815.9614
[2025-11-27 00:14:07] 2025-11-27 05:12:58,305 | INFO     | sum of deviations: 4624680356757.645
[2025-11-27 00:14:07] 2025-11-27 05:12:58,305 | INFO     | mean x: 1764171281.7202754
[2025-11-27 00:14:07] 2025-11-27 05:12:58,306 | INFO     | mean y: 2904690.7396745933
[2025-11-27 00:14:07] 2025-11-27 05:12:58,306 | INFO     | intersect: -6445125568.515364
[2025-11-27 00:14:07] 2025-11-27 05:12:58,328 | INFO     | chi2: 20.893600776417397
[2025-11-27 00:14:07] 2025-11-27 05:12:58,328 | INFO     | current chi2=20.893600776417397 (change=14.348027722839685 %)
[2025-11-27 00:14:07] 2025-11-27 05:12:58,328 | INFO     | right removable region: 1597
[2025-11-27 00:14:07] 2025-11-27 05:12:58,358 | INFO     | sum of square deviations: 1265300818871.0803
[2025-11-27 00:14:07] 2025-11-27 05:12:58,661 | INFO     | sum of deviations: 3516326525500.9897
[2025-11-27 00:14:07] 2025-11-27 05:12:58,661 | INFO     | mean x: 1764171586.7215269
[2025-11-27 00:14:07] 2025-11-27 05:12:58,661 | INFO     | mean y: 2904766.5819774717
[2025-11-27 00:14:07] 2025-11-27 05:12:58,661 | INFO     | intersect: -4899805524.444974
[2025-11-27 00:14:07] 2025-11-27 05:12:58,674 | INFO     | chi2: 21.422249966623898
[2025-11-27 00:14:07] 2025-11-27 05:12:58,674 | INFO     | current chi2=21.422249966623898 (change=12.18086437610733 %)
[2025-11-27 00:14:07] 2025-11-27 05:12:58,674 | INFO     | left removable region: 10
[2025-11-27 00:14:07] 2025-11-27 05:12:58,699 | INFO     | sum of square deviations: 1239351270849.1746
[2025-11-27 00:14:07] 2025-11-27 05:12:58,932 | INFO     | sum of deviations: 3941736338205.2627
[2025-11-27 00:14:07] 2025-11-27 05:12:58,932 | INFO     | mean x: 1764171556.247007
[2025-11-27 00:14:07] 2025-11-27 05:12:58,933 | INFO     | mean y: 2916207.5834908634
[2025-11-27 00:14:07] 2025-11-27 05:12:58,933 | INFO     | intersect: -5608002418.676767
[2025-11-27 00:14:07] 2025-11-27 05:12:58,935 | INFO     | chi2: 16.76186159798482
[2025-11-27 00:14:07] 2025-11-27 05:12:58,935 | INFO     | current memory leak: 3.18 B/s (using 1587 data points, chi2=16.76)
[2025-11-27 00:14:07] 2025-11-27 05:12:58,937 | INFO     | could have reported an average CPU frequency of 2631 MHz (57 samples)
[2025-11-27 00:14:07] 2025-11-27 05:12:58,937 | INFO     | ..............................
[2025-11-27 00:14:07] 2025-11-27 05:12:58,937 | INFO     | . Timing measurements:
[2025-11-27 00:14:07] 2025-11-27 05:12:58,937 | INFO     | . get job = 0 s
[2025-11-27 00:14:07] 2025-11-27 05:12:58,937 | INFO     | . initial setup = 2 s
[2025-11-27 00:14:07] 2025-11-27 05:12:58,937 | INFO     | . payload setup = 13 s
[2025-11-27 00:14:07] 2025-11-27 05:12:58,937 | INFO     | . stage-in = 0 s
[2025-11-27 00:14:07] 2025-11-27 05:12:58,937 | INFO     | . payload execution = 97778 s
[2025-11-27 00:14:07] 2025-11-27 05:12:58,938 | INFO     | . stage-out = 8 s
[2025-11-27 00:14:07] 2025-11-27 05:12:58,938 | INFO     | . log creation = 3 s
[2025-11-27 00:14:07] 2025-11-27 05:12:58,938 | INFO     | ..............................
[2025-11-27 00:14:07] 2025-11-27 05:12:59,265 | INFO     | 
[2025-11-27 00:14:07] 2025-11-27 05:12:59,265 | INFO     | job summary report
[2025-11-27 00:14:07] 2025-11-27 05:12:59,265 | INFO     | --------------------------------------------------
[2025-11-27 00:14:07] 2025-11-27 05:12:59,265 | INFO     | PanDA job id: 6897394709
[2025-11-27 00:14:07] 2025-11-27 05:12:59,265 | INFO     | task id: 47556161
[2025-11-27 00:14:07] 2025-11-27 05:12:59,265 | INFO     | errors: (none)
[2025-11-27 00:14:07] 2025-11-27 05:12:59,265 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 00:14:07] 2025-11-27 05:12:59,265 | INFO     | pilot state: finished 
[2025-11-27 00:14:07] 2025-11-27 05:12:59,265 | INFO     | transexitcode: 0
[2025-11-27 00:14:07] 2025-11-27 05:12:59,266 | INFO     | exeerrorcode: 0
[2025-11-27 00:14:07] 2025-11-27 05:12:59,266 | INFO     | exeerrordiag: 
[2025-11-27 00:14:07] 2025-11-27 05:12:59,266 | INFO     | exitcode: 0
[2025-11-27 00:14:07] 2025-11-27 05:12:59,266 | INFO     | exitmsg: OK
[2025-11-27 00:14:07] 2025-11-27 05:12:59,266 | INFO     | cpuconsumptiontime: 277751 s
[2025-11-27 00:14:07] 2025-11-27 05:12:59,266 | INFO     | nevents: 1000
[2025-11-27 00:14:07] 2025-11-27 05:12:59,266 | INFO     | neventsw: 0
[2025-11-27 00:14:07] 2025-11-27 05:12:59,266 | INFO     | pid: 3368344
[2025-11-27 00:14:07] 2025-11-27 05:12:59,266 | INFO     | pgrp: 3368344
[2025-11-27 00:14:07] 2025-11-27 05:12:59,266 | INFO     | corecount: 8
[2025-11-27 00:14:07] 2025-11-27 05:12:59,266 | INFO     | event service: False
[2025-11-27 00:14:07] 2025-11-27 05:12:59,266 | INFO     | sizes: {0: 2283437, 1: 2284293, 2: 2284293, 9: 2284583, 13: 2284611, 97796: 2354047, 97805: 2363041, 97806: 2363097, 97833: 2363343}
[2025-11-27 00:14:07] 2025-11-27 05:12:59,266 | INFO     | --------------------------------------------------
[2025-11-27 00:14:07] 2025-11-27 05:12:59,266 | INFO     | 
[2025-11-27 00:14:07] 2025-11-27 05:12:59,267 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-11-27 00:14:07] 2025-11-27 05:12:59,297 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 00:14:07] 2025-11-27 05:12:59,298 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 00:14:07] 2025-11-27 05:12:59,298 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 00:14:07] 2025-11-27 05:12:59,298 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 00:14:07] 2025-11-27 05:12:59,298 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 00:14:07] 2025-11-27 05:12:59,298 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 00:14:07] 2025-11-27 05:12:59,298 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 00:14:07] 2025-11-27 05:12:59,298 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 00:14:07] 2025-11-27 05:12:59,298 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 00:14:07] 2025-11-27 05:12:59,298 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 00:14:07] 2025-11-27 05:12:59,298 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 00:14:07] 2025-11-27 05:12:59,299 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 00:14:07] 2025-11-27 05:12:59,299 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 00:14:07] 2025-11-27 05:12:59,299 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 00:14:07] 2025-11-27 05:12:59,299 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 00:14:07] 2025-11-27 05:12:59,299 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 00:14:07] 2025-11-27 05:12:59,299 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 00:14:07] 2025-11-27 05:12:59,299 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 00:14:07] 2025-11-27 05:12:59,299 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 00:14:07] 2025-11-27 05:12:59,299 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 00:14:07] 2025-11-27 05:12:59,299 | INFO     | job 6897394709 has completed (purged errors)
[2025-11-27 00:14:07] 2025-11-27 05:12:59,299 | INFO     | overall cleanup function is called
[2025-11-27 00:14:07] 2025-11-27 05:13:00,318 | INFO     | --- collectZombieJob: --- 10, [3368344]
[2025-11-27 00:14:07] 2025-11-27 05:13:00,318 | INFO     | zombie collector waiting for pid 3368344
[2025-11-27 00:14:07] 2025-11-27 05:13:00,318 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 00:14:07] 2025-11-27 05:13:00,319 | INFO     | collected zombie processes
[2025-11-27 00:14:07] 2025-11-27 05:13:00,319 | INFO     | will attempt to kill all subprocesses of pid=3368344
[2025-11-27 00:14:07] 2025-11-27 05:13:01,337 | INFO     | process IDs to be killed: [3368344] (in reverse order)
[2025-11-27 00:14:07] 2025-11-27 05:13:01,877 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 00:14:07] 2025-11-27 05:13:01,878 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 00:14:07] 2025-11-27 05:13:01,951 | INFO     | did not find any defunct processes belonging to 3368344
[2025-11-27 00:14:07] 2025-11-27 05:13:02,043 | INFO     | did not find any defunct processes belonging to 3368344
[2025-11-27 00:14:07] 2025-11-27 05:13:02,053 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 00:14:07] 2025-11-27 05:13:02,054 | INFO     | ready for new job
[2025-11-27 00:14:07] 2025-11-27 05:13:02,054 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 00:14:07] 2025-11-27 05:13:02,082 | INFO     | ***************************************
[2025-11-27 00:14:07] 2025-11-27 05:13:02,083 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 00:14:07] 2025-11-27 05:13:02,083 | INFO     | ***************************************
[2025-11-27 00:14:07] 2025-11-27 05:13:02,083 | INFO     | 
[2025-11-27 00:14:07] 2025-11-27 05:13:02,126 | INFO     | architecture information:
[2025-11-27 00:14:07] 2025-11-27 05:13:02,130 | INFO     | executing command: cat /etc/os-release
[2025-11-27 00:14:07] 2025-11-27 05:13:02,192 | INFO     | cat /etc/os-release:
[2025-11-27 00:14:07] NAME="CentOS Linux"
[2025-11-27 00:14:07] VERSION="7 (Core)"
[2025-11-27 00:14:07] ID="centos"
[2025-11-27 00:14:07] ID_LIKE="rhel fedora"
[2025-11-27 00:14:07] VERSION_ID="7"
[2025-11-27 00:14:07] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 00:14:07] ANSI_COLOR="0;31"
[2025-11-27 00:14:07] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 00:14:07] HOME_URL="https://www.centos.org/"
[2025-11-27 00:14:07] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 00:14:07] 
[2025-11-27 00:14:07] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 00:14:07] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 00:14:07] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 00:14:07] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 00:14:07] 
[2025-11-27 00:14:07] 2025-11-27 05:13:02,192 | INFO     | ***************************************
[2025-11-27 00:14:07] 2025-11-27 05:13:02,695 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-11-27 00:14:07] 2025-11-27 05:13:02,746 | INFO     | sufficient remaining disk space (120789663744 B)
[2025-11-27 00:14:07] 2025-11-27 05:13:02,747 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 00:14:07] 2025-11-27 05:13:02,747 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 00:14:07] 2025-11-27 05:13:02,747 | INFO     | update_server=False
[2025-11-27 00:14:07] 2025-11-27 05:13:02,747 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 00:14:07] 2025-11-27 05:13:02,749 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 00:14:07] 2025-11-27 05:13:02,750 | INFO     | aborting loop
[2025-11-27 00:14:07] 2025-11-27 05:13:03,237 | INFO     | all payload control threads have been joined
[2025-11-27 00:14:07] 2025-11-27 05:13:03,448 | INFO     | all data control threads have been joined
[2025-11-27 00:14:07] 2025-11-27 05:13:03,471 | INFO     | all job control threads have been joined
[2025-11-27 00:14:07] 2025-11-27 05:13:03,754 | INFO     | [job] retrieve thread has finished
[2025-11-27 00:14:07] 2025-11-27 05:13:03,755 | INFO     | [job] job monitor thread has finished
[2025-11-27 00:14:07] 2025-11-27 05:13:03,775 | INFO     | [payload] failed_post thread has finished
[2025-11-27 00:14:07] 2025-11-27 05:13:03,836 | INFO     | [payload] validate_post thread has finished
[2025-11-27 00:14:07] 2025-11-27 05:13:04,096 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 00:14:07] 2025-11-27 05:13:04,099 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 00:14:07] 2025-11-27 05:13:04,240 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 00:14:07] 2025-11-27 05:13:04,243 | INFO     | [payload] control thread has finished
[2025-11-27 00:14:07] 2025-11-27 05:13:04,298 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 00:14:07] 2025-11-27 05:13:04,359 | INFO     | [data] copytool_in thread has finished
[2025-11-27 00:14:07] 2025-11-27 05:13:04,421 | INFO     | [job] validate thread has finished
[2025-11-27 00:14:07] 2025-11-27 05:13:04,454 | INFO     | [data] control thread has finished
[2025-11-27 00:14:07] 2025-11-27 05:13:04,477 | INFO     | [job] control thread has finished
[2025-11-27 00:14:07] 2025-11-27 05:13:04,625 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 00:14:07] 2025-11-27 05:13:05,132 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 00:14:07] 2025-11-27 05:13:05,304 | INFO     | [job] queue monitor thread has finished
[2025-11-27 00:14:07] 2025-11-27 05:13:05,514 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 00:14:07] 2025-11-27 05:13:06,107 | INFO     | [data] copytool_out thread has finished
[2025-11-27 00:14:07] 2025-11-27 05:13:09,534 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 00:14:07] 2025-11-27 05:13:32,211 | INFO     | PID=3361821 has CPU usage=3.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 00:14:07] 2025-11-27 05:13:32,216 | INFO     | .. there are 20 such processes running
[2025-11-27 00:14:07] 2025-11-27 05:13:32,217 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 00:14:07] 2025-11-27 05:13:32,217 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 00:14:07] 2025-11-27 05:13:32,217 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 00:14:07] 2025-11-27 05:14:00,596 | INFO     | [monitor] cgroup control has ended
[2025-11-27 00:14:07] 2025-11-27 05:14:01,602 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140642466408256)>', '<ExcThread(monitor, started 140641447175936)>']
[2025-11-27 00:14:07] 2025-11-27 05:14:02,407 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 00:14:07] 2025-11-27 05:14:02,407 | INFO     | [monitor] control thread has ended
[2025-11-27 00:14:07] 2025-11-27 05:14:06,628 | INFO     | all workflow threads have been joined
[2025-11-27 00:14:07] 2025-11-27 05:14:06,632 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 00:14:07] 2025-11-27 05:14:06,632 | INFO     | traces error code: 0
[2025-11-27 00:14:07] 2025-11-27 05:14:06,633 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 00:14:07] 2025-11-27 05:14:06,933 [wrapper] ==== pilot stdout END ====
[2025-11-27 00:14:07] 2025-11-27 05:14:06,936 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 00:14:07] 2025-11-27 05:14:06,939 [wrapper] pilotpid: 3361821
[2025-11-27 00:14:07] 2025-11-27 05:14:06,941 [wrapper] Pilot exit status: 0
[2025-11-27 00:14:07] 2025-11-27 05:14:07,007 [wrapper] pandaids: 6897394709
[2025-11-27 00:14:07] 2025-11-27 05:14:07,305 [wrapper] cleanup supervisor_pilot 2174663 3361822
[2025-11-27 00:14:07] 2025-11-27 05:14:07,309 [wrapper] Test setup, not cleaning
[2025-11-27 00:14:07] 2025-11-27 05:14:07,312 [wrapper] apfmon messages muted
[2025-11-27 00:14:07] 2025-11-27 05:14:07,315 [wrapper] ==== wrapper stdout END ====
[2025-11-27 00:14:07] 2025-11-27 05:14:07,318 [wrapper] ==== wrapper stderr END ====
[2025-11-27 00:14:07]  *** Error codes and diagnostics ***
[2025-11-27 00:14:07]     "exeErrorCode": 0,
[2025-11-27 00:14:07]     "exeErrorDiag": "",
[2025-11-27 00:14:07]     "pilotErrorCode": 0,
[2025-11-27 00:14:07]     "pilotErrorDiag": "",
[2025-11-27 00:14:07]  *** Listing of results directory ***
[2025-11-27 00:14:07] total 1338716
[2025-11-27 00:14:07] -rw-r--r--. 1 boincer umatlas    576529 Nov 25 11:48 pilot3.tar.gz
[2025-11-27 00:14:07] -rw-r--r--. 1 boincer umatlas      5112 Nov 25 11:55 queuedata.json
[2025-11-27 00:14:07] -rwx------. 1 boincer umatlas     36292 Nov 25 11:55 runpilot2-wrapper.sh
[2025-11-27 00:14:07] -rw-r--r--. 1 boincer umatlas       100 Nov 25 21:01 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 00:14:07] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 25 21:01 run_atlas
[2025-11-27 00:14:07] -rw-r--r--. 1 boincer umatlas       105 Nov 25 21:01 job.xml
[2025-11-27 00:14:07] -rw-r--r--. 2 boincer umatlas 412023212 Nov 25 21:01 EVNT.47483658._002233.pool.root.1
[2025-11-27 00:14:07] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 21:01 start_atlas.sh
[2025-11-27 00:14:07] drwxrwx--x. 2 boincer umatlas      4096 Nov 25 21:01 shared
[2025-11-27 00:14:07] -rw-r--r--. 2 boincer umatlas    590109 Nov 25 21:01 input.tar.gz
[2025-11-27 00:14:07] -rw-r--r--. 1 boincer umatlas         0 Nov 25 21:01 boinc_lockfile
[2025-11-27 00:14:07] -rw-r--r--. 1 boincer umatlas      2786 Nov 25 21:01 pandaJob.out
[2025-11-27 00:14:07] -rw-------. 1 boincer umatlas        57 Nov 25 21:01 setup.sh.local
[2025-11-27 00:14:07] -rw-------. 1 boincer umatlas    991877 Nov 25 21:02 agis_schedconf.cvmfs.json
[2025-11-27 00:14:07] drwx------. 5 boincer umatlas      4096 Nov 25 21:02 pilot3
[2025-11-27 00:14:07] -rw-r--r--. 1 boincer umatlas       533 Nov 26 23:34 boinc_task_state.xml
[2025-11-27 00:14:07] -rw-r--r--. 1 boincer umatlas      6884 Nov 27 00:09 init_data.xml
[2025-11-27 00:14:07] -rw-------. 1 boincer umatlas 925484882 Nov 27 00:11 HITS.47556161._002168.pool.root.1
[2025-11-27 00:14:07] -rw-------. 1 boincer umatlas      1059 Nov 27 00:12 memory_monitor_summary.json
[2025-11-27 00:14:07] -rw-------. 1 boincer umatlas   1516240 Nov 27 00:12 agis_ddmendpoints.agis.ALL.json
[2025-11-27 00:14:07] -rw-------. 1 boincer umatlas   2559177 Nov 27 00:12 log.47556161._002168.job.log.tgz.1
[2025-11-27 00:14:07] -rw-------. 1 boincer umatlas      8621 Nov 27 00:12 heartbeat.json
[2025-11-27 00:14:07] -rw-------. 1 boincer umatlas        95 Nov 27 00:13 pilot_heartbeat.json
[2025-11-27 00:14:07] -rw-r--r--. 1 boincer umatlas      8192 Nov 27 00:14 boinc_mmap_file
[2025-11-27 00:14:07] -rw-r--r--. 1 boincer umatlas        29 Nov 27 00:14 wrapper_checkpoint.txt
[2025-11-27 00:14:07] -rw-------. 1 boincer umatlas      4825 Nov 27 00:14 pilotlog.txt
[2025-11-27 00:14:07] -rw-------. 1 boincer umatlas  12150431 Nov 27 00:14 log.47556161._002168.job.log.1
[2025-11-27 00:14:07] -rw-------. 1 boincer umatlas       353 Nov 27 00:14 output.list
[2025-11-27 00:14:07] -rw-r--r--. 1 boincer umatlas       620 Nov 27 00:14 runtime_log
[2025-11-27 00:14:07] -rw-------. 1 boincer umatlas  14725120 Nov 27 00:14 result.tar.gz
[2025-11-27 00:14:07] -rw-------. 1 boincer umatlas       662 Nov 27 00:14 VgKNDmmVBi8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmFRMKDmAplIFm.diag
[2025-11-27 00:14:07] -rw-r--r--. 1 boincer umatlas      9353 Nov 27 00:14 runtime_log.err
[2025-11-27 00:14:07] -rw-r--r--. 1 boincer umatlas     21876 Nov 27 00:14 stderr.txt
[2025-11-27 00:14:07] HITS file was successfully produced:
[2025-11-27 00:14:07] -rw-------. 1 boincer umatlas 925484882 Nov 27 00:11 shared/HITS.pool.root.1
[2025-11-27 00:14:07]  *** Contents of shared directory: ***
[2025-11-27 00:14:07] total 1321148
[2025-11-27 00:14:07] -rw-r--r--. 2 boincer umatlas 412023212 Nov 25 21:01 ATLAS.root_0
[2025-11-27 00:14:07] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 21:01 start_atlas.sh
[2025-11-27 00:14:07] -rw-r--r--. 2 boincer umatlas    590109 Nov 25 21:01 input.tar.gz
[2025-11-27 00:14:07] -rw-------. 1 boincer umatlas 925484882 Nov 27 00:11 HITS.pool.root.1
[2025-11-27 00:14:07] -rw-------. 1 boincer umatlas  14725120 Nov 27 00:14 result.tar.gz
00:14:08 (3358133): run_atlas exited; CPU time 280807.502698
00:14:08 (3358133): called boinc_finish(0)

</stderr_txt>
]]>

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