Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
21:01:04 (1235900): wrapper (7.7.26015): starting
21:01:04 (1235900): wrapper: running run_atlas (--nthreads 8)
[2025-11-25 21:01:04] Arguments: --nthreads 8
[2025-11-25 21:01:04] Threads: 8
[2025-11-25 21:01:04] Checking for CVMFS
[2025-11-25 21:01:04] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 21:01:04] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 21:01:04] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 21:01:04] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 21:01:04] 2.13.2.0 6751 33718 244504 153304 0 559 27393706 40960000 22829 16776704 0 99886183 99.585 102978458 36666 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-25 21:01:04] CVMFS is ok
[2025-11-25 21:01:04] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 21:01:04] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 21:01:04] Further information can be found at the LHC@home message board.
[2025-11-25 21:01:04] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 21:01:04] Checking for apptainer binary...
[2025-11-25 21:01:04] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 21:01:04] Running /usr/bin/apptainer --version
[2025-11-25 21:01:04] apptainer version 1.4.4-1.el9
[2025-11-25 21:01:04] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 21:01:05] c-212-7.aglt2.org
[2025-11-25 21:01:05] apptainer works
[2025-11-25 21:01:05] Set ATHENA_PROC_NUMBER=8
[2025-11-25 21:01:05] Set ATHENA_CORE_NUMBER=8
[2025-11-25 21:01:05] Starting ATLAS job with PandaID=6897394496
[2025-11-25 21:01:05] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 15:54:43]  *** The last 200 lines of the pilot log: ***
[2025-11-26 15:54:43] 2025-11-26 20:53:40,728 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2915.9715624999994
[2025-11-26 15:54:43] 2025-11-26 20:53:40,746 | INFO     | using path: /tmp/boinchome/slots/5/PanDA_Pilot-6897394496/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 15:54:43] 2025-11-26 20:53:40,747 | INFO     | extracted standard info from prmon json
[2025-11-26 15:54:43] 2025-11-26 20:53:40,747 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 15:54:43] 2025-11-26 20:53:40,747 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 15:54:43] 2025-11-26 20:53:40,851 | INFO     | fitting pss+swap vs Time
[2025-11-26 15:54:43] 2025-11-26 20:53:40,859 | INFO     | sum of square deviations: 427517781583.2794
[2025-11-26 15:54:43] 2025-11-26 20:53:40,987 | INFO     | sum of deviations: 2541871446307.0625
[2025-11-26 15:54:43] 2025-11-26 20:53:41,056 | INFO     | mean x: 1764156467.1150045
[2025-11-26 15:54:43] 2025-11-26 20:53:41,056 | INFO     | mean y: 2882061.343216532
[2025-11-26 15:54:43] 2025-11-26 20:53:41,056 | INFO     | intersect: -10486176274.360306
[2025-11-26 15:54:43] 2025-11-26 20:53:41,057 | INFO     | chi2: 8.9426641662526
[2025-11-26 15:54:43] 2025-11-26 20:53:41,058 | INFO     | sum of square deviations: 421782318180.55133
[2025-11-26 15:54:43] 2025-11-26 20:53:41,108 | INFO     | sum of deviations: 2920557555781.1475
[2025-11-26 15:54:43] 2025-11-26 20:53:41,113 | INFO     | mean x: 1764156314.6218412
[2025-11-26 15:54:43] 2025-11-26 20:53:41,113 | INFO     | mean y: 2892129.2915162453
[2025-11-26 15:54:43] 2025-11-26 20:53:41,113 | INFO     | intersect: -12212698311.942438
[2025-11-26 15:54:43] 2025-11-26 20:53:41,114 | INFO     | chi2: 5.733518157204594
[2025-11-26 15:54:43] 2025-11-26 20:53:41,114 | INFO     | current chi2=5.733518157204594 (change=35.88579364479019 %)
[2025-11-26 15:54:43] 2025-11-26 20:53:41,115 | INFO     | sum of square deviations: 416097986805.2313
[2025-11-26 15:54:43] 2025-11-26 20:53:41,174 | INFO     | sum of deviations: 3097386431108.9995
[2025-11-26 15:54:43] 2025-11-26 20:53:41,174 | INFO     | mean x: 1764156162.1233
[2025-11-26 15:54:43] 2025-11-26 20:53:41,174 | INFO     | mean y: 2896863.198549411
[2025-11-26 15:54:43] 2025-11-26 20:53:41,174 | INFO     | intersect: -13129282412.342562
[2025-11-26 15:54:43] 2025-11-26 20:53:41,182 | INFO     | chi2: 4.431209478337787
[2025-11-26 15:54:43] 2025-11-26 20:53:41,182 | INFO     | current chi2=4.431209478337787 (change=22.7139540358891 %)
[2025-11-26 15:54:43] 2025-11-26 20:53:41,182 | INFO     | right removable region: 1102
[2025-11-26 15:54:43] 2025-11-26 20:53:41,183 | INFO     | sum of square deviations: 421781086275.81256
[2025-11-26 15:54:43] 2025-11-26 20:53:41,196 | INFO     | monitor loop #4240: job 0:6897394496 is in state 'finished'
[2025-11-26 15:54:43] 2025-11-26 20:53:41,196 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 15:54:43] 2025-11-26 20:53:41,235 | INFO     | sum of deviations: 2138871944576.7368
[2025-11-26 15:54:43] 2025-11-26 20:53:41,235 | INFO     | mean x: 1764156619.6245487
[2025-11-26 15:54:43] 2025-11-26 20:53:41,235 | INFO     | mean y: 2892773.222924188
[2025-11-26 15:54:43] 2025-11-26 20:53:41,235 | INFO     | intersect: -8943229332.135845
[2025-11-26 15:54:43] 2025-11-26 20:53:41,240 | INFO     | chi2: 5.587863198058093
[2025-11-26 15:54:43] 2025-11-26 20:53:41,240 | INFO     | current chi2=5.587863198058093 (change=37.51455836678621 %)
[2025-11-26 15:54:43] 2025-11-26 20:53:41,241 | INFO     | sum of square deviations: 416096061634.67395
[2025-11-26 15:54:43] 2025-11-26 20:53:41,296 | INFO     | sum of deviations: 1940249706541.816
[2025-11-26 15:54:43] 2025-11-26 20:53:41,296 | INFO     | mean x: 1764156772.1323662
[2025-11-26 15:54:43] 2025-11-26 20:53:41,297 | INFO     | mean y: 2898096.330009066
[2025-11-26 15:54:43] 2025-11-26 20:53:41,297 | INFO     | intersect: -8223338523.1091795
[2025-11-26 15:54:43] 2025-11-26 20:53:41,302 | INFO     | chi2: 4.769163223980818
[2025-11-26 15:54:43] 2025-11-26 20:53:41,302 | INFO     | current chi2=4.769163223980818 (change=14.651396160911595 %)
[2025-11-26 15:54:43] 2025-11-26 20:53:41,302 | INFO     | left removable region: 20
[2025-11-26 15:54:43] 2025-11-26 20:53:41,303 | INFO     | sum of square deviations: 392778877065.33795
[2025-11-26 15:54:43] 2025-11-26 20:53:41,359 | INFO     | sum of deviations: 2337894803913.8276
[2025-11-26 15:54:43] 2025-11-26 20:53:41,359 | INFO     | mean x: 1764156741.6524954
[2025-11-26 15:54:43] 2025-11-26 20:53:41,368 | INFO     | mean y: 2917213.7495378926
[2025-11-26 15:54:43] 2025-11-26 20:53:41,368 | INFO     | intersect: -10497680248.147146
[2025-11-26 15:54:43] 2025-11-26 20:53:41,369 | INFO     | chi2: 0.11539499248173102
[2025-11-26 15:54:43] 2025-11-26 20:53:41,369 | INFO     | current memory leak: 5.95 B/s (using 1082 data points, chi2=0.12)
[2025-11-26 15:54:43] 2025-11-26 20:53:41,370 | INFO     | could have reported an average CPU frequency of 3056 MHz (41 samples)
[2025-11-26 15:54:43] 2025-11-26 20:53:41,370 | INFO     | ..............................
[2025-11-26 15:54:43] 2025-11-26 20:53:41,371 | INFO     | . Timing measurements:
[2025-11-26 15:54:43] 2025-11-26 20:53:41,371 | INFO     | . get job = 0 s
[2025-11-26 15:54:43] 2025-11-26 20:53:41,371 | INFO     | . initial setup = 5 s
[2025-11-26 15:54:43] 2025-11-26 20:53:41,371 | INFO     | . payload setup = 13 s
[2025-11-26 15:54:43] 2025-11-26 20:53:41,371 | INFO     | . stage-in = 0 s
[2025-11-26 15:54:43] 2025-11-26 20:53:41,371 | INFO     | . payload execution = 67851 s
[2025-11-26 15:54:43] 2025-11-26 20:53:41,371 | INFO     | . stage-out = 12 s
[2025-11-26 15:54:43] 2025-11-26 20:53:41,371 | INFO     | . log creation = 5 s
[2025-11-26 15:54:43] 2025-11-26 20:53:41,371 | INFO     | ..............................
[2025-11-26 15:54:43] 2025-11-26 20:53:42,076 | INFO     | 
[2025-11-26 15:54:43] 2025-11-26 20:53:42,122 | INFO     | job summary report
[2025-11-26 15:54:43] 2025-11-26 20:53:42,122 | INFO     | --------------------------------------------------
[2025-11-26 15:54:43] 2025-11-26 20:53:42,122 | INFO     | PanDA job id: 6897394496
[2025-11-26 15:54:43] 2025-11-26 20:53:42,122 | INFO     | task id: 47556173
[2025-11-26 15:54:43] 2025-11-26 20:53:42,122 | INFO     | errors: (none)
[2025-11-26 15:54:43] 2025-11-26 20:53:42,122 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 15:54:43] 2025-11-26 20:53:42,122 | INFO     | pilot state: finished 
[2025-11-26 15:54:43] 2025-11-26 20:53:42,122 | INFO     | transexitcode: 0
[2025-11-26 15:54:43] 2025-11-26 20:53:42,123 | INFO     | exeerrorcode: 0
[2025-11-26 15:54:43] 2025-11-26 20:53:42,123 | INFO     | exeerrordiag: 
[2025-11-26 15:54:43] 2025-11-26 20:53:42,123 | INFO     | exitcode: 0
[2025-11-26 15:54:43] 2025-11-26 20:53:42,123 | INFO     | exitmsg: OK
[2025-11-26 15:54:43] 2025-11-26 20:53:42,123 | INFO     | cpuconsumptiontime: 219803 s
[2025-11-26 15:54:43] 2025-11-26 20:53:42,123 | INFO     | nevents: 1000
[2025-11-26 15:54:43] 2025-11-26 20:53:42,123 | INFO     | neventsw: 0
[2025-11-26 15:54:43] 2025-11-26 20:53:42,123 | INFO     | pid: 1258261
[2025-11-26 15:54:43] 2025-11-26 20:53:42,123 | INFO     | pgrp: 1258261
[2025-11-26 15:54:43] 2025-11-26 20:53:42,123 | INFO     | corecount: 8
[2025-11-26 15:54:43] 2025-11-26 20:53:42,123 | INFO     | event service: False
[2025-11-26 15:54:43] 2025-11-26 20:53:42,123 | INFO     | sizes: {0: 2284086, 1: 2284285, 11: 2284285, 13: 2284575, 22: 2284631, 67867: 2341115, 67868: 2341242, 67881: 2350292, 67882: 2350348, 67896: 2350690}
[2025-11-26 15:54:43] 2025-11-26 20:53:42,123 | INFO     | --------------------------------------------------
[2025-11-26 15:54:43] 2025-11-26 20:53:42,123 | INFO     | 
[2025-11-26 15:54:43] 2025-11-26 20:53:42,123 | INFO     | executing command: ls -lF /tmp/boinchome/slots/5
[2025-11-26 15:54:43] 2025-11-26 20:53:42,308 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 15:54:43] 2025-11-26 20:53:42,309 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 15:54:43] 2025-11-26 20:53:42,309 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 15:54:43] 2025-11-26 20:53:42,309 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 15:54:43] 2025-11-26 20:53:42,309 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 15:54:43] 2025-11-26 20:53:42,309 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 15:54:43] 2025-11-26 20:53:42,309 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 15:54:43] 2025-11-26 20:53:42,309 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 15:54:43] 2025-11-26 20:53:42,309 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 15:54:43] 2025-11-26 20:53:42,309 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 15:54:43] 2025-11-26 20:53:42,310 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 15:54:43] 2025-11-26 20:53:42,310 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 15:54:43] 2025-11-26 20:53:42,310 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 15:54:43] 2025-11-26 20:53:42,310 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 15:54:43] 2025-11-26 20:53:42,310 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 15:54:43] 2025-11-26 20:53:42,310 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 15:54:43] 2025-11-26 20:53:42,310 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 15:54:43] 2025-11-26 20:53:42,310 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 15:54:43] 2025-11-26 20:53:42,310 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 15:54:43] 2025-11-26 20:53:42,310 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 15:54:43] 2025-11-26 20:53:42,311 | INFO     | job 6897394496 has completed (purged errors)
[2025-11-26 15:54:43] 2025-11-26 20:53:42,311 | INFO     | overall cleanup function is called
[2025-11-26 15:54:43] 2025-11-26 20:53:43,359 | INFO     | --- collectZombieJob: --- 10, [1258261]
[2025-11-26 15:54:43] 2025-11-26 20:53:43,359 | INFO     | zombie collector waiting for pid 1258261
[2025-11-26 15:54:43] 2025-11-26 20:53:43,359 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 15:54:43] 2025-11-26 20:53:43,359 | INFO     | collected zombie processes
[2025-11-26 15:54:43] 2025-11-26 20:53:43,359 | INFO     | will attempt to kill all subprocesses of pid=1258261
[2025-11-26 15:54:43] 2025-11-26 20:53:44,361 | INFO     | process IDs to be killed: [1258261] (in reverse order)
[2025-11-26 15:54:43] 2025-11-26 20:53:44,551 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 15:54:43] 2025-11-26 20:53:44,551 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 15:54:43] 2025-11-26 20:53:44,878 | INFO     | did not find any defunct processes belonging to 1258261
[2025-11-26 15:54:43] 2025-11-26 20:53:45,099 | INFO     | did not find any defunct processes belonging to 1258261
[2025-11-26 15:54:43] 2025-11-26 20:53:45,175 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 15:54:43] 2025-11-26 20:53:45,175 | INFO     | ready for new job
[2025-11-26 15:54:43] 2025-11-26 20:53:45,175 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 15:54:43] 2025-11-26 20:53:45,257 | INFO     | ***************************************
[2025-11-26 15:54:43] 2025-11-26 20:53:45,257 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 15:54:43] 2025-11-26 20:53:45,257 | INFO     | ***************************************
[2025-11-26 15:54:43] 2025-11-26 20:53:45,257 | INFO     | 
[2025-11-26 15:54:43] 2025-11-26 20:53:45,304 | INFO     | architecture information:
[2025-11-26 15:54:43] 2025-11-26 20:53:45,391 | INFO     | executing command: cat /etc/os-release
[2025-11-26 15:54:43] 2025-11-26 20:53:45,547 | INFO     | cat /etc/os-release:
[2025-11-26 15:54:43] NAME="CentOS Linux"
[2025-11-26 15:54:43] VERSION="7 (Core)"
[2025-11-26 15:54:43] ID="centos"
[2025-11-26 15:54:43] ID_LIKE="rhel fedora"
[2025-11-26 15:54:43] VERSION_ID="7"
[2025-11-26 15:54:43] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 15:54:43] ANSI_COLOR="0;31"
[2025-11-26 15:54:43] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 15:54:43] HOME_URL="https://www.centos.org/"
[2025-11-26 15:54:43] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 15:54:43] 
[2025-11-26 15:54:43] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 15:54:43] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 15:54:43] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 15:54:43] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 15:54:43] 
[2025-11-26 15:54:43] 2025-11-26 20:53:45,547 | INFO     | ***************************************
[2025-11-26 15:54:43] 2025-11-26 20:53:46,051 | INFO     | executing command: df -mP /tmp/boinchome/slots/5
[2025-11-26 15:54:43] 2025-11-26 20:53:46,117 | INFO     | sufficient remaining disk space (119500963840 B)
[2025-11-26 15:54:43] 2025-11-26 20:53:46,118 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 15:54:43] 2025-11-26 20:53:46,118 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 15:54:43] 2025-11-26 20:53:46,118 | INFO     | update_server=False
[2025-11-26 15:54:43] 2025-11-26 20:53:46,118 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 15:54:43] 2025-11-26 20:53:46,234 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-26 15:54:43] 2025-11-26 20:53:46,234 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-26 15:54:43] 2025-11-26 20:53:46,234 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 15:54:43] 2025-11-26 20:53:46,234 | INFO     | will abort loop
[2025-11-26 15:54:43] 2025-11-26 20:53:46,349 | INFO     | all payload control threads have been joined
[2025-11-26 15:54:43] 2025-11-26 20:53:46,605 | INFO     | all data control threads have been joined
[2025-11-26 15:54:43] 2025-11-26 20:53:46,688 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 15:54:43] 2025-11-26 20:53:46,995 | INFO     | all job control threads have been joined
[2025-11-26 15:54:43] 2025-11-26 20:53:47,124 | INFO     | [job] retrieve thread has finished
[2025-11-26 15:54:43] 2025-11-26 20:53:47,240 | INFO     | [job] job monitor thread has finished
[2025-11-26 15:54:43] 2025-11-26 20:53:47,355 | INFO     | [payload] control thread has finished
[2025-11-26 15:54:43] 2025-11-26 20:53:47,371 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 15:54:43] 2025-11-26 20:53:47,387 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 15:54:43] 2025-11-26 20:53:47,545 | INFO     | [payload] validate_post thread has finished
[2025-11-26 15:54:43] 2025-11-26 20:53:47,545 | INFO     | [payload] failed_post thread has finished
[2025-11-26 15:54:43] 2025-11-26 20:53:47,612 | INFO     | [data] control thread has finished
[2025-11-26 15:54:43] 2025-11-26 20:53:47,694 | INFO     | [job] queue monitor thread has finished
[2025-11-26 15:54:43] 2025-11-26 20:53:48,002 | INFO     | [job] control thread has finished
[2025-11-26 15:54:43] 2025-11-26 20:53:48,191 | INFO     | [job] validate thread has finished
[2025-11-26 15:54:43] 2025-11-26 20:53:48,192 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 15:54:43] 2025-11-26 20:53:48,343 | INFO     | [data] copytool_in thread has finished
[2025-11-26 15:54:43] 2025-11-26 20:53:48,468 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 15:54:43] 2025-11-26 20:53:48,507 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 15:54:43] 2025-11-26 20:53:48,524 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 15:54:43] 2025-11-26 20:53:49,394 | INFO     | [data] copytool_out thread has finished
[2025-11-26 15:54:43] 2025-11-26 20:53:51,384 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 15:54:43] 2025-11-26 20:54:15,523 | INFO     | PID=1242042 has CPU usage=4.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-26 15:54:43] 2025-11-26 20:54:15,528 | INFO     | .. there are 26 such processes running
[2025-11-26 15:54:43] 2025-11-26 20:54:15,529 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 15:54:43] 2025-11-26 20:54:15,529 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 15:54:43] 2025-11-26 20:54:15,529 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 15:54:43] 2025-11-26 20:54:30,801 | INFO     | [monitor] cgroup control has ended
[2025-11-26 15:54:43] 2025-11-26 20:54:31,810 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139984985478976)>', '<ExcThread(monitor, started 139984644331264)>']
[2025-11-26 15:54:43] 2025-11-26 20:54:32,636 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 15:54:43] 2025-11-26 20:54:32,636 | INFO     | [monitor] control thread has ended
[2025-11-26 15:54:43] 2025-11-26 20:54:36,922 | INFO     | all workflow threads have been joined
[2025-11-26 15:54:43] 2025-11-26 20:54:36,981 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 15:54:43] 2025-11-26 20:54:36,981 | INFO     | traces error code: 0
[2025-11-26 15:54:43] 2025-11-26 20:54:36,981 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 15:54:43] 2025-11-26 20:54:42,821 [wrapper] ==== pilot stdout END ====
[2025-11-26 15:54:43] 2025-11-26 20:54:42,829 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 15:54:43] 2025-11-26 20:54:42,835 [wrapper] pilotpid: 1242042
[2025-11-26 15:54:43] 2025-11-26 20:54:42,842 [wrapper] Pilot exit status: 0
[2025-11-26 15:54:43] 2025-11-26 20:54:42,924 [wrapper] pandaids: 6897394496
[2025-11-26 15:54:43] 2025-11-26 20:54:43,017 [wrapper] cleanup supervisor_pilot 1162473 1242043
[2025-11-26 15:54:43] 2025-11-26 20:54:43,021 [wrapper] Test setup, not cleaning
[2025-11-26 15:54:43] 2025-11-26 20:54:43,027 [wrapper] apfmon messages muted
[2025-11-26 15:54:43] 2025-11-26 20:54:43,030 [wrapper] ==== wrapper stdout END ====
[2025-11-26 15:54:43] 2025-11-26 20:54:43,035 [wrapper] ==== wrapper stderr END ====
[2025-11-26 15:54:43]  *** Error codes and diagnostics ***
[2025-11-26 15:54:43]     "exeErrorCode": 0,
[2025-11-26 15:54:43]     "exeErrorDiag": "",
[2025-11-26 15:54:43]     "pilotErrorCode": 0,
[2025-11-26 15:54:43]     "pilotErrorDiag": "",
[2025-11-26 15:54:43]  *** Listing of results directory ***
[2025-11-26 15:54:43] total 1325128
[2025-11-26 15:54:43] -rw-r--r--. 1 boincer umatlas    576529 Nov 25 11:48 pilot3.tar.gz
[2025-11-26 15:54:43] -rw-r--r--. 1 boincer umatlas      5112 Nov 25 11:55 queuedata.json
[2025-11-26 15:54:43] -rwx------. 1 boincer umatlas     36292 Nov 25 11:56 runpilot2-wrapper.sh
[2025-11-26 15:54:43] -rw-r--r--. 1 boincer umatlas       100 Nov 25 21:01 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 15:54:43] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 25 21:01 run_atlas
[2025-11-26 15:54:43] -rw-r--r--. 1 boincer umatlas       105 Nov 25 21:01 job.xml
[2025-11-26 15:54:43] -rw-r--r--. 2 boincer umatlas 410807023 Nov 25 21:01 EVNT.47483658._003097.pool.root.1
[2025-11-26 15:54:43] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 21:01 start_atlas.sh
[2025-11-26 15:54:43] drwxrwx--x. 2 boincer umatlas      4096 Nov 25 21:01 shared
[2025-11-26 15:54:43] -rw-r--r--. 2 boincer umatlas    590103 Nov 25 21:01 input.tar.gz
[2025-11-26 15:54:43] -rw-r--r--. 1 boincer umatlas         0 Nov 25 21:01 boinc_lockfile
[2025-11-26 15:54:43] -rw-r--r--. 1 boincer umatlas      2782 Nov 25 21:01 pandaJob.out
[2025-11-26 15:54:43] -rw-------. 1 boincer umatlas        57 Nov 25 21:01 setup.sh.local
[2025-11-26 15:54:43] -rw-------. 1 boincer umatlas    991877 Nov 25 21:01 agis_schedconf.cvmfs.json
[2025-11-26 15:54:43] drwx------. 5 boincer umatlas      4096 Nov 25 21:01 pilot3
[2025-11-26 15:54:43] -rw-r--r--. 1 boincer umatlas       533 Nov 26 15:44 boinc_task_state.xml
[2025-11-26 15:54:43] -rw-r--r--. 1 boincer umatlas      6949 Nov 26 15:47 init_data.xml
[2025-11-26 15:54:43] -rw-------. 1 boincer umatlas 920084182 Nov 26 15:52 HITS.47556173._000791.pool.root.1
[2025-11-26 15:54:43] -rw-------. 1 boincer umatlas      1065 Nov 26 15:53 memory_monitor_summary.json
[2025-11-26 15:54:43] -rw-------. 1 boincer umatlas   1516240 Nov 26 15:53 agis_ddmendpoints.agis.ALL.json
[2025-11-26 15:54:43] -rw-------. 1 boincer umatlas   2243013 Nov 26 15:53 log.47556173._000791.job.log.tgz.1
[2025-11-26 15:54:43] -rw-------. 1 boincer umatlas      8608 Nov 26 15:53 heartbeat.json
[2025-11-26 15:54:43] -rw-------. 1 boincer umatlas        95 Nov 26 15:54 pilot_heartbeat.json
[2025-11-26 15:54:43] -rw-------. 1 boincer umatlas      5011 Nov 26 15:54 pilotlog.txt
[2025-11-26 15:54:43] -rw-r--r--. 1 boincer umatlas        29 Nov 26 15:54 wrapper_checkpoint.txt
[2025-11-26 15:54:43] -rw-r--r--. 1 boincer umatlas      8192 Nov 26 15:54 boinc_mmap_file
[2025-11-26 15:54:43] -rw-------. 1 boincer umatlas   8815774 Nov 26 15:54 log.47556173._000791.job.log.1
[2025-11-26 15:54:43] -rw-------. 1 boincer umatlas       353 Nov 26 15:54 output.list
[2025-11-26 15:54:43] -rw-r--r--. 1 boincer umatlas       620 Nov 26 15:54 runtime_log
[2025-11-26 15:54:43] -rw-------. 1 boincer umatlas  11079680 Nov 26 15:54 result.tar.gz
[2025-11-26 15:54:43] -rw-r--r--. 1 boincer umatlas      9338 Nov 26 15:54 runtime_log.err
[2025-11-26 15:54:43] -rw-------. 1 boincer umatlas       665 Nov 26 15:54 p1vLDm1VBi8n9Rq4apOajLDm4fhM0noT9bVo0NGKDm6VJKDmSzjAZm.diag
[2025-11-26 15:54:43] -rw-r--r--. 1 boincer umatlas     21386 Nov 26 15:54 stderr.txt
[2025-11-26 15:54:43] HITS file was successfully produced:
[2025-11-26 15:54:43] -rw-------. 1 boincer umatlas 920084182 Nov 26 15:52 shared/HITS.pool.root.1
[2025-11-26 15:54:43]  *** Contents of shared directory: ***
[2025-11-26 15:54:43] total 1311124
[2025-11-26 15:54:43] -rw-r--r--. 2 boincer umatlas 410807023 Nov 25 21:01 ATLAS.root_0
[2025-11-26 15:54:43] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 21:01 start_atlas.sh
[2025-11-26 15:54:43] -rw-r--r--. 2 boincer umatlas    590103 Nov 25 21:01 input.tar.gz
[2025-11-26 15:54:43] -rw-------. 1 boincer umatlas 920084182 Nov 26 15:52 HITS.pool.root.1
[2025-11-26 15:54:43] -rw-------. 1 boincer umatlas  11079680 Nov 26 15:54 result.tar.gz
15:54:44 (1235900): run_atlas exited; CPU time 219927.535549
15:54:44 (1235900): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN