Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
20:48:59 (5740): wrapper (7.7.26015): starting
20:48:59 (5740): wrapper: running run_atlas (--nthreads 8)
[2025-11-25 20:48:59] Arguments: --nthreads 8
[2025-11-25 20:48:59] Threads: 8
[2025-11-25 20:48:59] Checking for CVMFS
[2025-11-25 20:48:59] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 20:48:59] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 20:48:59] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 20:48:59] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 20:48:59] 2.11.2.0 2822 72660 84408 153304 2 58 19787541 20275200 1 130560 0 20555517 99.845 4675131 32401 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-25 20:48:59] CVMFS is ok
[2025-11-25 20:48:59] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 20:48:59] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 20:48:59] Further information can be found at the LHC@home message board.
[2025-11-25 20:48:59] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 20:48:59] Checking for apptainer binary...
[2025-11-25 20:48:59] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 20:48:59] Running /usr/bin/apptainer --version
[2025-11-25 20:49:00] apptainer version 1.3.2-1.el7
[2025-11-25 20:49:00] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 20:49:01] c-204-37.aglt2.org
[2025-11-25 20:49:01] apptainer works
[2025-11-25 20:49:01] Set ATHENA_PROC_NUMBER=8
[2025-11-25 20:49:01] Set ATHENA_CORE_NUMBER=8
[2025-11-25 20:49:01] Starting ATLAS job with PandaID=6897394851
[2025-11-25 20:49:01] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 09:16:45]  *** The last 200 lines of the pilot log: ***
[2025-11-26 09:16:45] 2025-11-26 14:16:08,698 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 09:16:45] 2025-11-26 14:16:10,140 | INFO     | time since job start (44810s) is within the limit (172800.0s)
[2025-11-26 09:16:45] 2025-11-26 14:16:11,201 | INFO     | monitor loop #3283: job 0:6897394851 is in state 'finished'
[2025-11-26 09:16:45] 2025-11-26 14:16:11,201 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 09:16:45] 2025-11-26 14:16:12,145 | INFO     | time since job start (44812s) is within the limit (172800.0s)
[2025-11-26 09:16:45] 2025-11-26 14:16:12,621 | INFO     | CPU arch script returned: x86-64-v2
[2025-11-26 09:16:45] 2025-11-26 14:16:12,624 | INFO     | found 8 cores (4 cores per socket, 2 sockets) , CPU MHz: 1679.25
[2025-11-26 09:16:45] 2025-11-26 14:16:12,628 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6897394851/memory_monitor_output.txt (trf name=prmon)
[2025-11-26 09:16:45] 2025-11-26 14:16:12,635 | INFO     | extracted standard info from memory monitor json
[2025-11-26 09:16:45] 2025-11-26 14:16:12,635 | WARNING  | standard memory fields were not found in memory monitor json (or json doesn't exist yet): 'totRCHAR'
[2025-11-26 09:16:45] 2025-11-26 14:16:12,640 | INFO     | fitting pss+swap vs Time
[2025-11-26 09:16:45] 2025-11-26 14:16:12,641 | INFO     | sum of square deviations: 10256400508.324038
[2025-11-26 09:16:45] 2025-11-26 14:16:12,643 | INFO     | sum of deviations: 239306709536.0376
[2025-11-26 09:16:45] 2025-11-26 14:16:12,643 | INFO     | mean x: 1764131553.610592
[2025-11-26 09:16:45] 2025-11-26 14:16:12,644 | INFO     | mean y: 2767734.2242990653
[2025-11-26 09:16:45] 2025-11-26 14:16:12,644 | INFO     | intersect: -41158701822.33397
[2025-11-26 09:16:45] 2025-11-26 14:16:12,644 | INFO     | chi2: 2.341330322354402
[2025-11-26 09:16:45] 2025-11-26 14:16:12,645 | INFO     | sum of square deviations: 9784579353.898712
[2025-11-26 09:16:45] 2025-11-26 14:16:12,647 | INFO     | sum of deviations: 232151613395.24048
[2025-11-26 09:16:45] 2025-11-26 14:16:12,647 | INFO     | mean x: 1764131401.113924
[2025-11-26 09:16:45] 2025-11-26 14:16:12,647 | INFO     | mean y: 2765421.85443038
[2025-11-26 09:16:45] 2025-11-26 14:16:12,647 | INFO     | intersect: -41853500054.35309
[2025-11-26 09:16:45] 2025-11-26 14:16:12,648 | INFO     | chi2: 2.340888036358746
[2025-11-26 09:16:45] 2025-11-26 14:16:12,648 | INFO     | current chi2=2.340888036358746 (change=0.018890371488092486 %)
[2025-11-26 09:16:45] 2025-11-26 14:16:12,648 | INFO     | right removable region: 315
[2025-11-26 09:16:45] 2025-11-26 14:16:12,649 | INFO     | sum of square deviations: 9784499321.430325
[2025-11-26 09:16:45] 2025-11-26 14:16:12,651 | INFO     | sum of deviations: 156600967176.65198
[2025-11-26 09:16:45] 2025-11-26 14:16:12,651 | INFO     | mean x: 1764131706.120253
[2025-11-26 09:16:45] 2025-11-26 14:16:12,651 | INFO     | mean y: 2794349.351265823
[2025-11-26 09:16:45] 2025-11-26 14:16:12,651 | INFO     | intersect: -28232143620.376522
[2025-11-26 09:16:45] 2025-11-26 14:16:12,652 | INFO     | chi2: 0.04418059569404617
[2025-11-26 09:16:45] 2025-11-26 14:16:12,652 | INFO     | current chi2=0.04418059569404617 (change=98.11301313307989 %)
[2025-11-26 09:16:45] 2025-11-26 14:16:12,652 | INFO     | sum of square deviations: 9327315116.733122
[2025-11-26 09:16:45] 2025-11-26 14:16:12,655 | INFO     | sum of deviations: 142190083489.6431
[2025-11-26 09:16:45] 2025-11-26 14:16:12,655 | INFO     | mean x: 1764131858.6270096
[2025-11-26 09:16:45] 2025-11-26 14:16:12,655 | INFO     | mean y: 2799148.9710610933
[2025-11-26 09:16:45] 2025-11-26 14:16:12,655 | INFO     | intersect: -26890476474.890438
[2025-11-26 09:16:45] 2025-11-26 14:16:12,655 | INFO     | chi2: 0.025889413392502305
[2025-11-26 09:16:45] 2025-11-26 14:16:12,656 | INFO     | current chi2=0.025889413392502305 (change=41.40094087506567 %)
[2025-11-26 09:16:45] 2025-11-26 14:16:12,656 | INFO     | sum of square deviations: 8884615636.771194
[2025-11-26 09:16:45] 2025-11-26 14:16:12,658 | INFO     | sum of deviations: 135159892145.26149
[2025-11-26 09:16:45] 2025-11-26 14:16:12,658 | INFO     | mean x: 1764132011.130719
[2025-11-26 09:16:45] 2025-11-26 14:16:12,659 | INFO     | mean y: 2801566.993464052
[2025-11-26 09:16:45] 2025-11-26 14:16:12,659 | INFO     | intersect: -26834588152.781055
[2025-11-26 09:16:45] 2025-11-26 14:16:12,659 | INFO     | chi2: 0.025386285598161338
[2025-11-26 09:16:45] 2025-11-26 14:16:12,659 | INFO     | current chi2=0.025386285598161338 (change=1.943372708810294 %)
[2025-11-26 09:16:45] 2025-11-26 14:16:12,659 | INFO     | left removable region: 30
[2025-11-26 09:16:45] 2025-11-26 14:16:12,660 | INFO     | sum of square deviations: 7178070267.775414
[2025-11-26 09:16:45] 2025-11-26 14:16:12,662 | INFO     | sum of deviations: 112297678590.02461
[2025-11-26 09:16:45] 2025-11-26 14:16:12,662 | INFO     | mean x: 1764132285.6385965
[2025-11-26 09:16:45] 2025-11-26 14:16:12,662 | INFO     | mean y: 2805790.9614035087
[2025-11-26 09:16:45] 2025-11-26 14:16:12,662 | INFO     | intersect: -27596249806.515366
[2025-11-26 09:16:45] 2025-11-26 14:16:12,663 | INFO     | chi2: 0.015616827755494292
[2025-11-26 09:16:45] 2025-11-26 14:16:12,663 | INFO     | current memory leak: 15.64 B/s (using 285 data points, chi2=0.02)
[2025-11-26 09:16:45] 2025-11-26 14:16:12,663 | INFO     | could have reported an average CPU frequency of 2174 MHz (28 samples)
[2025-11-26 09:16:45] 2025-11-26 14:16:12,664 | INFO     | ..............................
[2025-11-26 09:16:45] 2025-11-26 14:16:12,664 | INFO     | . Timing measurements:
[2025-11-26 09:16:45] 2025-11-26 14:16:12,664 | INFO     | . get job = 0 s
[2025-11-26 09:16:45] 2025-11-26 14:16:12,664 | INFO     | . initial setup = 3 s
[2025-11-26 09:16:45] 2025-11-26 14:16:12,664 | INFO     | . payload setup = 9 s
[2025-11-26 09:16:45] 2025-11-26 14:16:12,664 | INFO     | . stage-in = 0 s
[2025-11-26 09:16:45] 2025-11-26 14:16:12,664 | INFO     | . payload execution = 44707 s
[2025-11-26 09:16:45] 2025-11-26 14:16:12,664 | INFO     | . stage-out = 3 s
[2025-11-26 09:16:45] 2025-11-26 14:16:12,664 | INFO     | . log creation = 0 s
[2025-11-26 09:16:45] 2025-11-26 14:16:12,665 | INFO     | ..............................
[2025-11-26 09:16:45] 2025-11-26 14:16:12,753 | INFO     | 
[2025-11-26 09:16:45] 2025-11-26 14:16:12,753 | INFO     | job summary report
[2025-11-26 09:16:45] 2025-11-26 14:16:12,753 | INFO     | --------------------------------------------------
[2025-11-26 09:16:45] 2025-11-26 14:16:12,753 | INFO     | PanDA job id: 6897394851
[2025-11-26 09:16:45] 2025-11-26 14:16:12,754 | INFO     | task id: 47556161
[2025-11-26 09:16:45] 2025-11-26 14:16:12,754 | INFO     | errors: (none)
[2025-11-26 09:16:45] 2025-11-26 14:16:12,754 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 09:16:45] 2025-11-26 14:16:12,754 | INFO     | pilot state: finished 
[2025-11-26 09:16:45] 2025-11-26 14:16:12,754 | INFO     | transexitcode: 0
[2025-11-26 09:16:45] 2025-11-26 14:16:12,754 | INFO     | exeerrorcode: 0
[2025-11-26 09:16:45] 2025-11-26 14:16:12,755 | INFO     | exeerrordiag: 
[2025-11-26 09:16:45] 2025-11-26 14:16:12,755 | INFO     | exitcode: 0
[2025-11-26 09:16:45] 2025-11-26 14:16:12,755 | INFO     | exitmsg: OK
[2025-11-26 09:16:45] 2025-11-26 14:16:12,755 | INFO     | cpuconsumptiontime: 348212 s
[2025-11-26 09:16:45] 2025-11-26 14:16:12,755 | INFO     | nevents: 1000
[2025-11-26 09:16:45] 2025-11-26 14:16:12,755 | INFO     | neventsw: 0
[2025-11-26 09:16:45] 2025-11-26 14:16:12,756 | INFO     | pid: 16871
[2025-11-26 09:16:45] 2025-11-26 14:16:12,756 | INFO     | pgrp: 16871
[2025-11-26 09:16:45] 2025-11-26 14:16:12,756 | INFO     | corecount: 8
[2025-11-26 09:16:45] 2025-11-26 14:16:12,756 | INFO     | event service: False
[2025-11-26 09:16:45] 2025-11-26 14:16:12,756 | INFO     | sizes: {0: 2284151, 1: 2284293, 8: 2284555, 11: 2284583, 44780: 2330369, 44784: 2339363, 44785: 2339547, 44795: 2339793}
[2025-11-26 09:16:45] 2025-11-26 14:16:12,757 | INFO     | --------------------------------------------------
[2025-11-26 09:16:45] 2025-11-26 14:16:12,757 | INFO     | 
[2025-11-26 09:16:45] 2025-11-26 14:16:12,757 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-26 09:16:45] 2025-11-26 14:16:12,786 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 09:16:45] 2025-11-26 14:16:12,786 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 09:16:45] 2025-11-26 14:16:12,787 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 09:16:45] 2025-11-26 14:16:12,787 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 09:16:45] 2025-11-26 14:16:12,787 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 09:16:45] 2025-11-26 14:16:12,787 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 09:16:45] 2025-11-26 14:16:12,787 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 09:16:45] 2025-11-26 14:16:12,787 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 09:16:45] 2025-11-26 14:16:12,788 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 09:16:45] 2025-11-26 14:16:12,788 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 09:16:45] 2025-11-26 14:16:12,788 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 09:16:45] 2025-11-26 14:16:12,788 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 09:16:45] 2025-11-26 14:16:12,788 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 09:16:45] 2025-11-26 14:16:12,789 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 09:16:45] 2025-11-26 14:16:12,789 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 09:16:45] 2025-11-26 14:16:12,789 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 09:16:45] 2025-11-26 14:16:12,789 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 09:16:45] 2025-11-26 14:16:12,789 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 09:16:45] 2025-11-26 14:16:12,789 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 09:16:45] 2025-11-26 14:16:12,790 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 09:16:45] 2025-11-26 14:16:12,790 | INFO     | job 6897394851 has completed (purged errors)
[2025-11-26 09:16:45] 2025-11-26 14:16:12,790 | INFO     | overall cleanup function is called
[2025-11-26 09:16:45] 2025-11-26 14:16:13,806 | INFO     | --- collectZombieJob: --- 10, [16871]
[2025-11-26 09:16:45] 2025-11-26 14:16:13,806 | INFO     | zombie collector waiting for pid 16871
[2025-11-26 09:16:45] 2025-11-26 14:16:13,806 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 09:16:45] 2025-11-26 14:16:13,807 | INFO     | collected zombie processes
[2025-11-26 09:16:45] 2025-11-26 14:16:13,807 | INFO     | will attempt to kill all subprocesses of pid=16871
[2025-11-26 09:16:45] 2025-11-26 14:16:13,899 | INFO     | process IDs to be killed: [16871] (in reverse order)
[2025-11-26 09:16:45] 2025-11-26 14:16:13,945 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 09:16:45] 2025-11-26 14:16:13,946 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 09:16:45] 2025-11-26 14:16:13,950 | INFO     | did not find any defunct processes belonging to 16871
[2025-11-26 09:16:45] 2025-11-26 14:16:13,953 | INFO     | did not find any defunct processes belonging to 16871
[2025-11-26 09:16:45] 2025-11-26 14:16:13,955 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 09:16:45] 2025-11-26 14:16:13,955 | INFO     | ready for new job
[2025-11-26 09:16:45] 2025-11-26 14:16:13,956 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 09:16:45] 2025-11-26 14:16:14,637 | INFO     | ***************************************
[2025-11-26 09:16:45] 2025-11-26 14:16:14,638 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 09:16:45] 2025-11-26 14:16:14,638 | INFO     | ***************************************
[2025-11-26 09:16:45] 2025-11-26 14:16:14,638 | INFO     | 
[2025-11-26 09:16:45] 2025-11-26 14:16:14,638 | INFO     | architecture information:
[2025-11-26 09:16:45] 2025-11-26 14:16:14,639 | INFO     | executing command: cat /etc/os-release
[2025-11-26 09:16:45] 2025-11-26 14:16:14,658 | INFO     | cat /etc/os-release:
[2025-11-26 09:16:45] NAME="CentOS Linux"
[2025-11-26 09:16:45] VERSION="7 (Core)"
[2025-11-26 09:16:45] ID="centos"
[2025-11-26 09:16:45] ID_LIKE="rhel fedora"
[2025-11-26 09:16:45] VERSION_ID="7"
[2025-11-26 09:16:45] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 09:16:45] ANSI_COLOR="0;31"
[2025-11-26 09:16:45] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 09:16:45] HOME_URL="https://www.centos.org/"
[2025-11-26 09:16:45] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 09:16:45] 
[2025-11-26 09:16:45] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 09:16:45] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 09:16:45] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 09:16:45] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 09:16:45] 
[2025-11-26 09:16:45] 2025-11-26 14:16:14,658 | INFO     | ***************************************
[2025-11-26 09:16:45] 2025-11-26 14:16:15,161 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-26 09:16:45] 2025-11-26 14:16:15,182 | INFO     | sufficient remaining disk space (17435721728 B)
[2025-11-26 09:16:45] 2025-11-26 14:16:15,183 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 09:16:45] 2025-11-26 14:16:15,183 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 09:16:45] 2025-11-26 14:16:15,183 | INFO     | update_server=False
[2025-11-26 09:16:45] 2025-11-26 14:16:15,184 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 09:16:45] 2025-11-26 14:16:15,184 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 09:16:45] 2025-11-26 14:16:15,184 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 09:16:45] 2025-11-26 14:16:15,185 | INFO     | aborting loop
[2025-11-26 09:16:45] 2025-11-26 14:16:15,397 | INFO     | all data control threads have been joined
[2025-11-26 09:16:45] 2025-11-26 14:16:16,189 | INFO     | [job] retrieve thread has finished
[2025-11-26 09:16:45] 2025-11-26 14:16:16,191 | INFO     | [job] job monitor thread has finished
[2025-11-26 09:16:45] 2025-11-26 14:16:16,220 | INFO     | [payload] failed_post thread has finished
[2025-11-26 09:16:45] 2025-11-26 14:16:16,402 | INFO     | [data] control thread has finished
[2025-11-26 09:16:45] 2025-11-26 14:16:16,403 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 09:16:45] 2025-11-26 14:16:16,463 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 09:16:45] 2025-11-26 14:16:16,558 | INFO     | all payload control threads have been joined
[2025-11-26 09:16:45] 2025-11-26 14:16:16,593 | INFO     | [payload] validate_post thread has finished
[2025-11-26 09:16:45] 2025-11-26 14:16:16,689 | INFO     | [job] validate thread has finished
[2025-11-26 09:16:45] 2025-11-26 14:16:16,748 | INFO     | [data] copytool_in thread has finished
[2025-11-26 09:16:45] 2025-11-26 14:16:16,752 | INFO     | all job control threads have been joined
[2025-11-26 09:16:45] 2025-11-26 14:16:16,794 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 09:16:45] 2025-11-26 14:16:16,896 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 09:16:45] 2025-11-26 14:16:17,190 | INFO     | [data] copytool_out thread has finished
[2025-11-26 09:16:45] 2025-11-26 14:16:17,560 | INFO     | [payload] control thread has finished
[2025-11-26 09:16:45] 2025-11-26 14:16:17,757 | INFO     | [job] control thread has finished
[2025-11-26 09:16:45] 2025-11-26 14:16:17,764 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 09:16:45] 2025-11-26 14:16:18,234 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 09:16:45] 2025-11-26 14:16:18,769 | INFO     | [job] queue monitor thread has finished
[2025-11-26 09:16:45] 2025-11-26 14:16:22,239 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 09:16:45] 2025-11-26 14:16:34,475 | INFO     | [monitor] cgroup control has ended
[2025-11-26 09:16:45] 2025-11-26 14:16:35,283 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140612457039680)>', '<ExcThread(monitor, started 140612162533120)>']
[2025-11-26 09:16:45] 2025-11-26 14:16:40,308 | INFO     | all workflow threads have been joined
[2025-11-26 09:16:45] 2025-11-26 14:16:41,164 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 09:16:45] 2025-11-26 14:16:41,165 | INFO     | traces error code: 0
[2025-11-26 09:16:45] 2025-11-26 14:16:41,165 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 09:16:45] 2025-11-26 14:16:45,415 | INFO     | PID=9488 has CPU usage=1.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-11-26 09:16:45] 2025-11-26 14:16:45,415 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 09:16:45] 2025-11-26 14:16:45,416 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 09:16:45] 2025-11-26 14:16:45,416 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 09:16:45] 2025-11-26 14:16:45,416 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 09:16:45] 2025-11-26 14:16:45,416 | INFO     | [monitor] control thread has ended
[2025-11-26 09:16:45] 2025-11-26 14:16:45,549 [wrapper] ==== pilot stdout END ====
[2025-11-26 09:16:45] 2025-11-26 14:16:45,554 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 09:16:45] 2025-11-26 14:16:45,559 [wrapper] pilotpid: 9488
[2025-11-26 09:16:45] 2025-11-26 14:16:45,564 [wrapper] Pilot exit status: 0
[2025-11-26 09:16:45] 2025-11-26 14:16:45,580 [wrapper] pandaids: 6897394851
[2025-11-26 09:16:45] 2025-11-26 14:16:45,638 [wrapper] cleanup supervisor_pilot 28150 9489
[2025-11-26 09:16:45] 2025-11-26 14:16:45,643 [wrapper] Test setup, not cleaning
[2025-11-26 09:16:45] 2025-11-26 14:16:45,648 [wrapper] apfmon messages muted
[2025-11-26 09:16:45] 2025-11-26 14:16:45,653 [wrapper] ==== wrapper stdout END ====
[2025-11-26 09:16:45] 2025-11-26 14:16:45,658 [wrapper] ==== wrapper stderr END ====
[2025-11-26 09:16:45]  *** Error codes and diagnostics ***
[2025-11-26 09:16:45]     "exeErrorCode": 0,
[2025-11-26 09:16:45]     "exeErrorDiag": "",
[2025-11-26 09:16:45]     "pilotErrorCode": 0,
[2025-11-26 09:16:45]     "pilotErrorDiag": "",
[2025-11-26 09:16:45]  *** Listing of results directory ***
[2025-11-26 09:16:45] total 1310372
[2025-11-26 09:16:45] -rw-r--r-- 1 boincer umatlas    576529 Nov 25 11:48 pilot3.tar.gz
[2025-11-26 09:16:45] -rw-r--r-- 1 boincer umatlas      5112 Nov 25 11:55 queuedata.json
[2025-11-26 09:16:45] -rwx------ 1 boincer umatlas     36292 Nov 25 11:56 runpilot2-wrapper.sh
[2025-11-26 09:16:45] -rw-r--r-- 1 boincer umatlas       100 Nov 25 20:48 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 09:16:45] -rwxr-xr-x 1 boincer umatlas      7986 Nov 25 20:48 run_atlas
[2025-11-26 09:16:45] -rw-r--r-- 1 boincer umatlas       105 Nov 25 20:48 job.xml
[2025-11-26 09:16:45] -rw-r--r-- 2 boincer umatlas 409993799 Nov 25 20:48 EVNT.47483658._002237.pool.root.1
[2025-11-26 09:16:45] -rw-r--r-- 2 boincer umatlas     15847 Nov 25 20:48 start_atlas.sh
[2025-11-26 09:16:45] drwxrwx--x 2 boincer umatlas      4096 Nov 25 20:48 shared
[2025-11-26 09:16:45] -rw-r--r-- 2 boincer umatlas    590108 Nov 25 20:48 input.tar.gz
[2025-11-26 09:16:45] -rw-r--r-- 1 boincer umatlas         0 Nov 25 20:48 boinc_lockfile
[2025-11-26 09:16:45] -rw-r--r-- 1 boincer umatlas      2786 Nov 25 20:49 pandaJob.out
[2025-11-26 09:16:45] -rw------- 1 boincer umatlas        57 Nov 25 20:49 setup.sh.local
[2025-11-26 09:16:45] -rw------- 1 boincer umatlas    991877 Nov 25 20:49 agis_schedconf.cvmfs.json
[2025-11-26 09:16:45] drwx------ 5 boincer umatlas      4096 Nov 25 20:49 pilot3
[2025-11-26 09:16:45] -rw-r--r-- 1 boincer umatlas       532 Nov 26 09:04 boinc_task_state.xml
[2025-11-26 09:16:45] -rw-r--r-- 1 boincer umatlas      5913 Nov 26 09:12 init_data.xml
[2025-11-26 09:16:45] -rw------- 1 boincer umatlas 911714427 Nov 26 09:14 HITS.47556161._002210.pool.root.1
[2025-11-26 09:16:45] -rw------- 1 boincer umatlas        95 Nov 26 09:15 pilot_heartbeat.json
[2025-11-26 09:16:45] -rw------- 1 boincer umatlas   1516240 Nov 26 09:16 agis_ddmendpoints.agis.ALL.json
[2025-11-26 09:16:45] -rw------- 1 boincer umatlas   1964275 Nov 26 09:16 log.47556161._002210.job.log.tgz.1
[2025-11-26 09:16:45] -rw------- 1 boincer umatlas      8401 Nov 26 09:16 heartbeat.json
[2025-11-26 09:16:45] -rw-r--r-- 1 boincer umatlas      8192 Nov 26 09:16 boinc_mmap_file
[2025-11-26 09:16:45] -rw-r--r-- 1 boincer umatlas        29 Nov 26 09:16 wrapper_checkpoint.txt
[2025-11-26 09:16:45] -rw------- 1 boincer umatlas       744 Nov 26 09:16 pilotlog.txt
[2025-11-26 09:16:45] -rw------- 1 boincer umatlas   6133894 Nov 26 09:16 log.47556161._002210.job.log.1
[2025-11-26 09:16:45] -rw------- 1 boincer umatlas       353 Nov 26 09:16 output.list
[2025-11-26 09:16:45] -rw-r--r-- 1 boincer umatlas       620 Nov 26 09:16 runtime_log
[2025-11-26 09:16:45] -rw------- 1 boincer umatlas   8120320 Nov 26 09:16 result.tar.gz
[2025-11-26 09:16:45] -rw-r--r-- 1 boincer umatlas      9343 Nov 26 09:16 runtime_log.err
[2025-11-26 09:16:45] -rw------- 1 boincer umatlas       668 Nov 26 09:16 l29NDmtVBi8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmiVJKDmRz9Wnm.diag
[2025-11-26 09:16:45] -rw-r--r-- 1 boincer umatlas     21422 Nov 26 09:16 stderr.txt
[2025-11-26 09:16:45] HITS file was successfully produced:
[2025-11-26 09:16:45] -rw------- 1 boincer umatlas 911714427 Nov 26 09:14 shared/HITS.pool.root.1
[2025-11-26 09:16:45]  *** Contents of shared directory: ***
[2025-11-26 09:16:45] total 1299268
[2025-11-26 09:16:45] -rw-r--r-- 2 boincer umatlas 409993799 Nov 25 20:48 ATLAS.root_0
[2025-11-26 09:16:45] -rw-r--r-- 2 boincer umatlas     15847 Nov 25 20:48 start_atlas.sh
[2025-11-26 09:16:45] -rw-r--r-- 2 boincer umatlas    590108 Nov 25 20:48 input.tar.gz
[2025-11-26 09:16:45] -rw------- 1 boincer umatlas 911714427 Nov 26 09:14 HITS.pool.root.1
[2025-11-26 09:16:45] -rw------- 1 boincer umatlas   8120320 Nov 26 09:16 result.tar.gz
09:16:47 (5740): run_atlas exited; CPU time 345219.843231
09:16:47 (5740): called boinc_finish(0)

</stderr_txt>
]]>

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