Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
18:10:59 (37833): wrapper (7.7.26015): starting
18:10:59 (37833): wrapper: running run_atlas (--nthreads 12)
[2025-11-25 18:10:59] Arguments: --nthreads 12
[2025-11-25 18:10:59] Threads: 12
[2025-11-25 18:10:59] Checking for CVMFS
[2025-11-25 18:10:59] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 18:10:59] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 18:10:59] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 18:10:59] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 18:10:59] 2.11.5.0 3742376 27468 215980 153304 2 387 30420340 45568000 16607 130560 0 260763309 99.779 155555561 22104 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.162:3129 1
[2025-11-25 18:10:59] CVMFS is ok
[2025-11-25 18:10:59] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 18:10:59] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 18:10:59] Further information can be found at the LHC@home message board.
[2025-11-25 18:10:59] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 18:10:59] Checking for apptainer binary...
[2025-11-25 18:10:59] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 18:10:59] Running /usr/bin/apptainer --version
[2025-11-25 18:10:59] apptainer version 1.4.1-1.el9
[2025-11-25 18:10:59] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 18:10:59] wns0066.triumf.lcg
[2025-11-25 18:10:59] apptainer works
[2025-11-25 18:10:59] Set ATHENA_PROC_NUMBER=12
[2025-11-25 18:10:59] Set ATHENA_CORE_NUMBER=12
[2025-11-25 18:10:59] Starting ATLAS job with PandaID=6897394859
[2025-11-25 18:10:59] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 18:15:14]  *** The last 200 lines of the pilot log: ***
[2025-11-25 18:15:14] 2025-11-26 02:14:22,600 | INFO     | could have reported an average CPU frequency of 2636 MHz (4 samples)
[2025-11-25 18:15:14] 2025-11-26 02:14:22,600 | INFO     | ..............................
[2025-11-25 18:15:14] 2025-11-26 02:14:22,600 | INFO     | . Timing measurements:
[2025-11-25 18:15:14] 2025-11-26 02:14:22,600 | INFO     | . get job = 0 s
[2025-11-25 18:15:14] 2025-11-26 02:14:22,600 | INFO     | . initial setup = 2 s
[2025-11-25 18:15:14] 2025-11-26 02:14:22,600 | INFO     | . payload setup = 4 s
[2025-11-25 18:15:14] 2025-11-26 02:14:22,600 | INFO     | . stage-in = 0 s
[2025-11-25 18:15:14] 2025-11-26 02:14:22,600 | INFO     | . payload execution = 51 s
[2025-11-25 18:15:14] 2025-11-26 02:14:22,600 | INFO     | . stage-out = 0 s
[2025-11-25 18:15:14] 2025-11-26 02:14:22,601 | INFO     | . log creation = 0 s
[2025-11-25 18:15:14] 2025-11-26 02:14:22,601 | INFO     | ..............................
[2025-11-25 18:15:14] 2025-11-26 02:14:22,601 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-25 18:15:14] 2025-11-26 02:14:22,601 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6897394859/pilotlog.txt
[2025-11-25 18:15:14] 2025-11-26 02:14:22,611 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-11-25 18:15:14] - Log from pilotlog.txt -
[2025-11-25 18:15:14] 2025-11-26 02:14:22,598 | INFO     | extracted standard memory fields from prmon json
[2025-11-25 18:15:14] 2025-11-26 02:14:22,598 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-25 18:15:14] 2025-11-26 02:14:22,598 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-25 18:15:14] 2025-11-26 02:14:22,598 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-25 18:15:14] 2025-11-26 02:14:22,599 | WARNING  | found no stored workdir sizes
[2025-11-25 18:15:14] 2025-11-26 02:14:22,599 | INFO     | will not add max space = 0 B to job metrics
[2025-11-25 18:15:14] 2025-11-26 02:14:22,599 | WARNING  | wrong length of table data, x=[1764123092.0], y=[2896.0] (must be same and length>=4)
[2025-11-25 18:15:14] 2025-11-26 02:14:22,600 | INFO     | could have reported an average CPU frequency of 2636 MHz (4 samples)
[2025-11-25 18:15:14] 2025-11-26 02:14:22,600 | INFO     | ..............................
[2025-11-25 18:15:14] 2025-11-26 02:14:22,600 | INFO     | . Timing measurements:
[2025-11-25 18:15:14] 2025-11-26 02:14:22,600 | INFO     | . get job = 0 s
[2025-11-25 18:15:14] 2025-11-26 02:14:22,600 | INFO     | . initial setup = 2 s
[2025-11-25 18:15:14] 2025-11-26 02:14:22,600 | INFO     | . payload setup = 4 s
[2025-11-25 18:15:14] 2025-11-26 02:14:22,600 | INFO     | . stage-in = 0 s
[2025-11-25 18:15:14] 2025-11-26 02:14:22,600 | INFO     | . payload execution = 51 s
[2025-11-25 18:15:14] 2025-11-26 02:14:22,600 | INFO     | . stage-out = 0 s
[2025-11-25 18:15:14] 2025-11-26 02:14:22,601 | INFO     | . log creation = 0 s
[2025-11-25 18:15:14] 2025-11-26 02:14:22,601 | INFO     | ..............................
[2025-11-25 18:15:14] 2025-11-26 02:14:22,601 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-25 18:15:14] 2025-11-26 02:14:22,601 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6897394859/pilotlog.txt
[2025-11-25 18:15:14] 2025-11-26 02:14:22,612 | WARNING  | 
[2025-11-25 18:15:14] [begin log extracts]
[2025-11-25 18:15:14] - Log from pilotlog.txt -
[2025-11-25 18:15:14] 2025-11-26 02:14:22,598 | INFO     | extracted standard memory fields from prmon json
[2025-11-25 18:15:14] 2025-11-26 02:14:22,598 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-25 18:15:14] 2025-11-26 02:14:22,598 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-25 18:15:14] 2025-11-26 02:14:22,598 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-25 18:15:14] 2025-11-26 02:14:22,599 | WARNING  | found no stored workdir sizes
[2025-11-25 18:15:14] 2025-11-26 02:14:22,599 | INFO     | will not add max space = 0 B to job metrics
[2025-11-25 18:15:14] 2025-11-26 02:14:22,599 | WARNING  | wrong length of table data, x=[1764123092.0], y=[2896.0] (must be same and length>=4)
[2025-11-25 18:15:14] 2025-11-26 02:14:22,600 | INFO     | could have reported an average CPU frequency of 2636 MHz (4 samples)
[2025-11-25 18:15:14] 2025-11-26 02:14:22,600 | INFO     | ..............................
[2025-11-25 18:15:14] 2025-11-26 02:14:22,600 | INFO     | . Timing measurements:
[2025-11-25 18:15:14] 2025-11-26 02:14:22,600 | INFO     | . get job = 0 s
[2025-11-25 18:15:14] 2025-11-26 02:14:22,600 | INFO     | . initial setup = 2 s
[2025-11-25 18:15:14] 2025-11-26 02:14:22,600 | INFO     | . payload setup = 4 s
[2025-11-25 18:15:14] 2025-11-26 02:14:22,600 | INFO     | . stage-in = 0 s
[2025-11-25 18:15:14] 2025-11-26 02:14:22,600 | INFO     | . payload execution = 51 s
[2025-11-25 18:15:14] 2025-11-26 02:14:22,600 | INFO     | . stage-out = 0 s
[2025-11-25 18:15:14] 2025-11-26 02:14:22,601 | INFO     | . log creation = 0 s
[2025-11-25 18:15:14] 2025-11-26 02:14:22,601 | INFO     | ..............................
[2025-11-25 18:15:14] 2025-11-26 02:14:22,601 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-25 18:15:14] 2025-11-26 02:14:22,601 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6897394859/pilotlog.txt
[2025-11-25 18:15:14] [end log extracts]
[2025-11-25 18:15:14] 2025-11-26 02:14:22,612 | WARNING  | pilotErrorCodes = [1305, 1165] (will report primary/first error code)
[2025-11-25 18:15:14] 2025-11-26 02:14:22,613 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2025-11-25 18:15:14] 2025-11-26 02:14:22,668 | INFO     | 
[2025-11-25 18:15:14] 2025-11-26 02:14:22,668 | INFO     | job summary report
[2025-11-25 18:15:14] 2025-11-26 02:14:22,668 | INFO     | --------------------------------------------------
[2025-11-25 18:15:14] 2025-11-26 02:14:22,668 | INFO     | PanDA job id: 6897394859
[2025-11-25 18:15:14] 2025-11-26 02:14:22,668 | INFO     | task id: 47556161
[2025-11-25 18:15:14] 2025-11-26 02:14:22,668 | INFO     | error 1/2: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-11-25 18:12:15,736 CRITICAL Transform executor raised TransformValidationExceptio
[2025-11-25 18:15:14] 2025-11-26 02:14:22,668 | INFO     | error 2/2: 1165: Local output file is missing
[2025-11-25 18:15:14] 2025-11-26 02:14:22,668 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-25 18:15:14] 2025-11-26 02:14:22,668 | INFO     | pilot state: failed 
[2025-11-25 18:15:14] 2025-11-26 02:14:22,669 | INFO     | transexitcode: 65
[2025-11-25 18:15:14] 2025-11-26 02:14:22,669 | INFO     | exeerrorcode: 65
[2025-11-25 18:15:14] 2025-11-26 02:14:22,669 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFL
[2025-11-25 18:15:14] 2025-11-26 02:14:22,669 | INFO     | exitcode: 65
[2025-11-25 18:15:14] 2025-11-26 02:14:22,669 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 
[2025-11-25 18:15:14] 2025-11-26 02:14:22,669 | INFO     | cpuconsumptiontime: 43 s
[2025-11-25 18:15:14] 2025-11-26 02:14:22,669 | INFO     | nevents: 0
[2025-11-25 18:15:14] 2025-11-26 02:14:22,669 | INFO     | neventsw: 0
[2025-11-25 18:15:14] 2025-11-26 02:14:22,669 | INFO     | pid: 48021
[2025-11-25 18:15:14] 2025-11-26 02:14:22,669 | INFO     | pgrp: 48021
[2025-11-25 18:15:14] 2025-11-26 02:14:22,669 | INFO     | corecount: 12
[2025-11-25 18:15:14] 2025-11-26 02:14:22,669 | INFO     | event service: False
[2025-11-25 18:15:14] 2025-11-26 02:14:22,669 | INFO     | sizes: {0: 2284262, 3: 2284524, 11: 2284552, 60: 2314285, 180: 2314423}
[2025-11-25 18:15:14] 2025-11-26 02:14:22,669 | INFO     | --------------------------------------------------
[2025-11-25 18:15:14] 2025-11-26 02:14:22,669 | INFO     | 
[2025-11-25 18:15:14] 2025-11-26 02:14:22,669 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2025-11-25 18:15:14] 2025-11-26 02:14:22,683 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-25 18:15:14] 2025-11-26 02:14:22,683 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-25 18:15:14] 2025-11-26 02:14:22,683 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-25 18:15:14] 2025-11-26 02:14:22,684 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-25 18:15:14] 2025-11-26 02:14:22,684 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-25 18:15:14] 2025-11-26 02:14:22,684 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-25 18:15:14] 2025-11-26 02:14:22,684 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-25 18:15:14] 2025-11-26 02:14:22,684 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-25 18:15:14] 2025-11-26 02:14:22,684 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-25 18:15:14] 2025-11-26 02:14:22,684 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-25 18:15:14] 2025-11-26 02:14:22,684 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-25 18:15:14] 2025-11-26 02:14:22,684 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-25 18:15:14] 2025-11-26 02:14:22,684 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-25 18:15:14] 2025-11-26 02:14:22,684 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-25 18:15:14] 2025-11-26 02:14:22,684 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-25 18:15:14] 2025-11-26 02:14:22,684 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-25 18:15:14] 2025-11-26 02:14:22,684 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-25 18:15:14] 2025-11-26 02:14:22,684 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-25 18:15:14] 2025-11-26 02:14:22,684 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-25 18:15:14] 2025-11-26 02:14:22,684 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-25 18:15:14] 2025-11-26 02:14:22,684 | INFO     | job 6897394859 has completed (purged errors)
[2025-11-25 18:15:14] 2025-11-26 02:14:22,685 | INFO     | overall cleanup function is called
[2025-11-25 18:15:14] 2025-11-26 02:14:23,692 | INFO     | --- collectZombieJob: --- 10, [48021]
[2025-11-25 18:15:14] 2025-11-26 02:14:23,692 | INFO     | zombie collector waiting for pid 48021
[2025-11-25 18:15:14] 2025-11-26 02:14:23,692 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-25 18:15:14] 2025-11-26 02:14:23,692 | INFO     | collected zombie processes
[2025-11-25 18:15:14] 2025-11-26 02:14:23,692 | INFO     | will attempt to kill all subprocesses of pid=48021
[2025-11-25 18:15:14] 2025-11-26 02:14:23,851 | INFO     | process IDs to be killed: [48021] (in reverse order)
[2025-11-25 18:15:14] 2025-11-26 02:14:23,910 | WARNING  | found no corresponding commands to process id(s)
[2025-11-25 18:15:14] 2025-11-26 02:14:23,910 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-25 18:15:14] 2025-11-26 02:14:23,917 | INFO     | did not find any defunct processes belonging to 48021
[2025-11-25 18:15:14] 2025-11-26 02:14:23,923 | INFO     | did not find any defunct processes belonging to 48021
[2025-11-25 18:15:14] 2025-11-26 02:14:23,924 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-25 18:15:14] 2025-11-26 02:14:23,924 | INFO     | ready for new job
[2025-11-25 18:15:14] 2025-11-26 02:14:23,924 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-25 18:15:14] 2025-11-26 02:14:23,926 | INFO     | ***************************************
[2025-11-25 18:15:14] 2025-11-26 02:14:23,926 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-25 18:15:14] 2025-11-26 02:14:23,926 | INFO     | ***************************************
[2025-11-25 18:15:14] 2025-11-26 02:14:23,926 | INFO     | 
[2025-11-25 18:15:14] 2025-11-26 02:14:23,928 | INFO     | architecture information:
[2025-11-25 18:15:14] 2025-11-26 02:14:23,928 | INFO     | executing command: cat /etc/os-release
[2025-11-25 18:15:14] 2025-11-26 02:14:23,937 | INFO     | cat /etc/os-release:
[2025-11-25 18:15:14] NAME="CentOS Linux"
[2025-11-25 18:15:14] VERSION="7 (Core)"
[2025-11-25 18:15:14] ID="centos"
[2025-11-25 18:15:14] ID_LIKE="rhel fedora"
[2025-11-25 18:15:14] VERSION_ID="7"
[2025-11-25 18:15:14] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-25 18:15:14] ANSI_COLOR="0;31"
[2025-11-25 18:15:14] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-25 18:15:14] HOME_URL="https://www.centos.org/"
[2025-11-25 18:15:14] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-25 18:15:14] 
[2025-11-25 18:15:14] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-25 18:15:14] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-25 18:15:14] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-25 18:15:14] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-25 18:15:14] 
[2025-11-25 18:15:14] 2025-11-26 02:14:23,937 | INFO     | ***************************************
[2025-11-25 18:15:14] 2025-11-26 02:14:24,440 | INFO     | executing command: df -mP /home/boinc/slots/0
[2025-11-25 18:15:14] 2025-11-26 02:14:24,452 | INFO     | sufficient remaining disk space (1789162160128 B)
[2025-11-25 18:15:14] 2025-11-26 02:14:24,453 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-25 18:15:14] 2025-11-26 02:14:24,453 | INFO     | current server update state: UPDATING_FINAL
[2025-11-25 18:15:14] 2025-11-26 02:14:24,453 | INFO     | update_server=False
[2025-11-25 18:15:14] 2025-11-26 02:14:24,453 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 18:15:14] 2025-11-26 02:14:24,453 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 18:15:14] 2025-11-26 02:14:24,453 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 18:15:14] 2025-11-26 02:14:24,659 | INFO     | all job control threads have been joined
[2025-11-25 18:15:14] 2025-11-26 02:14:24,889 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-25 18:15:14] 2025-11-26 02:14:24,889 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-25 18:15:14] 2025-11-26 02:14:24,889 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 18:15:14] 2025-11-26 02:14:24,889 | INFO     | will abort loop
[2025-11-25 18:15:14] 2025-11-26 02:14:24,893 | INFO     | all data control threads have been joined
[2025-11-25 18:15:14] 2025-11-26 02:14:25,458 | INFO     | [job] retrieve thread has finished
[2025-11-25 18:15:14] 2025-11-26 02:14:25,459 | INFO     | [job] queue monitor thread has finished
[2025-11-25 18:15:14] 2025-11-26 02:14:25,494 | INFO     | [payload] failed_post thread has finished
[2025-11-25 18:15:14] 2025-11-26 02:14:25,600 | INFO     | all payload control threads have been joined
[2025-11-25 18:15:14] 2025-11-26 02:14:25,664 | INFO     | [job] control thread has finished
[2025-11-25 18:15:14] 2025-11-26 02:14:25,791 | INFO     | [data] copytool_in thread has finished
[2025-11-25 18:15:14] 2025-11-26 02:14:25,894 | INFO     | [job] job monitor thread has finished
[2025-11-25 18:15:14] 2025-11-26 02:14:25,898 | INFO     | [data] control thread has finished
[2025-11-25 18:15:14] 2025-11-26 02:14:25,999 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 18:15:14] 2025-11-26 02:14:26,093 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 18:15:14] 2025-11-26 02:14:26,278 | INFO     | [payload] validate_post thread has finished
[2025-11-25 18:15:14] 2025-11-26 02:14:26,459 | INFO     | [data] copytool_out thread has finished
[2025-11-25 18:15:14] 2025-11-26 02:14:26,605 | INFO     | [payload] control thread has finished
[2025-11-25 18:15:14] 2025-11-26 02:14:26,616 | INFO     | [job] validate thread has finished
[2025-11-25 18:15:14] 2025-11-26 02:14:26,718 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 18:15:14] 2025-11-26 02:14:26,811 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 18:15:14] 2025-11-26 02:14:26,867 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 18:15:14] 2025-11-26 02:14:30,098 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 18:15:14] 2025-11-26 02:14:54,487 | INFO     | PID=41503 has CPU usage=1.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-25 18:15:14] 2025-11-26 02:14:54,488 | INFO     | .. there are 21 such processes running
[2025-11-25 18:15:14] 2025-11-26 02:14:54,488 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 18:15:14] 2025-11-26 02:14:54,488 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 18:15:14] 2025-11-26 02:14:54,488 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 18:15:14] 2025-11-26 02:15:08,389 | INFO     | [monitor] cgroup control has ended
[2025-11-25 18:15:14] 2025-11-26 02:15:09,701 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140607718524736)>', '<ExcThread(monitor, started 140606919649024)>']
[2025-11-25 18:15:14] 2025-11-26 02:15:10,566 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 18:15:14] 2025-11-26 02:15:10,566 | INFO     | [monitor] control thread has ended
[2025-11-25 18:15:14] 2025-11-26 02:15:14,726 | INFO     | all workflow threads have been joined
[2025-11-25 18:15:14] 2025-11-26 02:15:14,726 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 18:15:14] 2025-11-26 02:15:14,726 | INFO     | traces error code: 0
[2025-11-25 18:15:14] 2025-11-26 02:15:14,727 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 18:15:14] 2025-11-26 02:15:14,852 [wrapper] ==== pilot stdout END ====
[2025-11-25 18:15:14] 2025-11-26 02:15:14,853 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 18:15:14] 2025-11-26 02:15:14,855 [wrapper] pilotpid: 41503
[2025-11-25 18:15:14] 2025-11-26 02:15:14,857 [wrapper] Pilot exit status: 0
[2025-11-25 18:15:14] 2025-11-26 02:15:14,864 [wrapper] pandaids: 6897394859
[2025-11-25 18:15:14] 2025-11-26 02:15:14,901 [wrapper] cleanup supervisor_pilot   41509 41504
[2025-11-25 18:15:14] 2025-11-26 02:15:14,904 [wrapper] Test setup, not cleaning
[2025-11-25 18:15:14] 2025-11-26 02:15:14,905 [wrapper] apfmon messages muted
[2025-11-25 18:15:14] 2025-11-26 02:15:14,908 [wrapper] ==== wrapper stdout END ====
[2025-11-25 18:15:14] 2025-11-26 02:15:14,910 [wrapper] ==== wrapper stderr END ====
[2025-11-25 18:15:14]  *** Error codes and diagnostics ***
[2025-11-25 18:15:14]     "exeErrorCode": 65,
[2025-11-25 18:15:14]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 cannot be opened - STOP\"",
[2025-11-25 18:15:14]     "pilotErrorCode": 1305,
[2025-11-25 18:15:14]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 canno",
[2025-11-25 18:15:14]  *** Listing of results directory ***
[2025-11-25 18:15:14] total 403888
[2025-11-25 18:15:14] -rw-r--r--. 1 boinc boinc    576529 Nov 25 08:48 pilot3.tar.gz
[2025-11-25 18:15:14] -rw-r--r--. 1 boinc boinc      5112 Nov 25 08:55 queuedata.json
[2025-11-25 18:15:14] -rwx------. 1 boinc boinc     36292 Nov 25 08:56 runpilot2-wrapper.sh
[2025-11-25 18:15:14] -rw-r--r--. 1 boinc boinc       100 Nov 25 18:10 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 18:15:14] -rwxr-xr-x. 1 boinc boinc      7986 Nov 25 18:10 run_atlas
[2025-11-25 18:15:14] -rw-r--r--. 1 boinc boinc       105 Nov 25 18:10 job.xml
[2025-11-25 18:15:14] -rw-r--r--. 1 boinc boinc      6595 Nov 25 18:10 init_data.xml
[2025-11-25 18:15:14] -rw-r--r--. 2 boinc boinc 409386098 Nov 25 18:10 EVNT.47483658._002238.pool.root.1
[2025-11-25 18:15:14] -rw-r--r--. 2 boinc boinc     15847 Nov 25 18:10 start_atlas.sh
[2025-11-25 18:15:14] drwxrwx--x. 2 boinc boinc      4096 Nov 25 18:10 shared
[2025-11-25 18:15:14] -rw-r--r--. 2 boinc boinc    590106 Nov 25 18:10 input.tar.gz
[2025-11-25 18:15:14] -rw-r--r--. 1 boinc boinc         0 Nov 25 18:10 boinc_lockfile
[2025-11-25 18:15:14] -rw-r--r--. 1 boinc boinc      2786 Nov 25 18:10 pandaJob.out
[2025-11-25 18:15:14] -rw-------. 1 boinc boinc    991877 Nov 25 18:11 agis_schedconf.cvmfs.json
[2025-11-25 18:15:14] -rw-------. 1 boinc boinc   1516240 Nov 25 18:11 agis_ddmendpoints.agis.ALL.json
[2025-11-25 18:15:14] drwx------. 5 boinc boinc      4096 Nov 25 18:11 pilot3
[2025-11-25 18:15:14] -rw-r--r--. 1 boinc boinc       523 Nov 25 18:12 boinc_task_state.xml
[2025-11-25 18:15:14] -rw-------. 1 boinc boinc       964 Nov 25 18:12 memory_monitor_summary.json
[2025-11-25 18:15:14] -rw-------. 1 boinc boinc     48791 Nov 25 18:12 log.47556161._002218.job.log.tgz.1
[2025-11-25 18:15:14] -rw-------. 1 boinc boinc        95 Nov 25 18:14 pilot_heartbeat.json
[2025-11-25 18:15:14] -rw-------. 1 boinc boinc     10311 Nov 25 18:14 heartbeat.json
[2025-11-25 18:15:14] -rw-r--r--. 1 boinc boinc      8192 Nov 25 18:15 boinc_mmap_file
[2025-11-25 18:15:14] -rw-r--r--. 1 boinc boinc        23 Nov 25 18:15 wrapper_checkpoint.txt
[2025-11-25 18:15:14] -rw-------. 1 boinc boinc      5007 Nov 25 18:15 pilotlog.txt
[2025-11-25 18:15:14] -rw-------. 1 boinc boinc     91728 Nov 25 18:15 log.47556161._002218.job.log.1
[2025-11-25 18:15:14] -rw-------. 1 boinc boinc       186 Nov 25 18:15 output.list
[2025-11-25 18:15:14] -rw-r--r--. 1 boinc boinc       620 Nov 25 18:15 runtime_log
[2025-11-25 18:15:14] -rw-------. 1 boinc boinc    163840 Nov 25 18:15 result.tar.gz
[2025-11-25 18:15:14] -rw-------. 1 boinc boinc       645 Nov 25 18:15 SOHODmtVBi8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmnVJKDmTOejum.diag
[2025-11-25 18:15:14] -rw-r--r--. 1 boinc boinc      8636 Nov 25 18:15 runtime_log.err
[2025-11-25 18:15:14] -rw-r--r--. 1 boinc boinc     22196 Nov 25 18:15 stderr.txt
[2025-11-25 18:15:14] No HITS result produced
[2025-11-25 18:15:14]  *** Contents of shared directory: ***
[2025-11-25 18:15:14] total 400552
[2025-11-25 18:15:14] -rw-r--r--. 2 boinc boinc 409386098 Nov 25 18:10 ATLAS.root_0
[2025-11-25 18:15:14] -rw-r--r--. 2 boinc boinc     15847 Nov 25 18:10 start_atlas.sh
[2025-11-25 18:15:14] -rw-r--r--. 2 boinc boinc    590106 Nov 25 18:10 input.tar.gz
[2025-11-25 18:15:14] -rw-------. 1 boinc boinc    163840 Nov 25 18:15 result.tar.gz
18:15:16 (37833): run_atlas exited; CPU time 41.115131
18:15:16 (37833): called boinc_finish(0)

</stderr_txt>
]]>

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