Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:02:46 (2073159): wrapper (7.7.26015): starting
00:02:46 (2073159): wrapper: running run_atlas (--nthreads 9)
[2025-11-26 00:02:46] Arguments: --nthreads 9
[2025-11-26 00:02:46] Threads: 9
[2025-11-26 00:02:46] Checking for CVMFS
[2025-11-26 00:02:46] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 00:02:46] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 00:02:46] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 00:02:46] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 00:02:46] 2.13.3.0 15397 29465 220972 153309 2 254 16913124 32935936 42733 16776704 0 298768840 99.624 285169225 36406 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-26 00:02:46] CVMFS is ok
[2025-11-26 00:02:46] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 00:02:46] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 00:02:46] Further information can be found at the LHC@home message board.
[2025-11-26 00:02:46] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 00:02:46] Checking for apptainer binary...
[2025-11-26 00:02:46] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 00:02:46] Running /usr/bin/apptainer --version
[2025-11-26 00:02:46] apptainer version 1.4.4-1.el9
[2025-11-26 00:02:46] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 00:02:47] c7-16-8.aglt2.org
[2025-11-26 00:02:47] apptainer works
[2025-11-26 00:02:47] Set ATHENA_PROC_NUMBER=9
[2025-11-26 00:02:47] Set ATHENA_CORE_NUMBER=9
[2025-11-26 00:02:47] Starting ATLAS job with PandaID=6897394586
[2025-11-26 00:02:47] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 17:22:19]  *** The last 200 lines of the pilot log: ***
[2025-11-26 17:22:19] 2025-11-26 22:21:22,348 | INFO     | time since job start (62281s) is within the limit (172800.0s)
[2025-11-26 17:22:19] 2025-11-26 22:21:23,065 | INFO     | monitor loop #3641: job 0:6897394586 is in state 'finished'
[2025-11-26 17:22:19] 2025-11-26 22:21:23,065 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 17:22:19] 2025-11-26 22:21:24,353 | INFO     | time since job start (62283s) is within the limit (172800.0s)
[2025-11-26 17:22:19] 2025-11-26 22:21:25,570 | INFO     | monitor loop #3642: job 0:6897394586 is in state 'finished'
[2025-11-26 17:22:19] 2025-11-26 22:21:25,570 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 17:22:19] 2025-11-26 22:21:26,363 | INFO     | time since job start (62285s) is within the limit (172800.0s)
[2025-11-26 17:22:19] 2025-11-26 22:21:28,081 | INFO     | monitor loop #3643: job 0:6897394586 is in state 'finished'
[2025-11-26 17:22:19] 2025-11-26 22:21:28,081 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 17:22:19] 2025-11-26 22:21:28,219 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-26 17:22:19] 2025-11-26 22:21:28,225 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 3194.6694374999993
[2025-11-26 17:22:19] 2025-11-26 22:21:28,239 | INFO     | using path: /tmp/boinchome/slots/3/PanDA_Pilot-6897394586/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 17:22:19] 2025-11-26 22:21:28,240 | INFO     | extracted standard info from prmon json
[2025-11-26 17:22:19] 2025-11-26 22:21:28,240 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 17:22:19] 2025-11-26 22:21:28,240 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 17:22:19] 2025-11-26 22:21:28,264 | INFO     | fitting pss+swap vs Time
[2025-11-26 17:22:19] 2025-11-26 22:21:28,266 | INFO     | sum of square deviations: 329068298041.5243
[2025-11-26 17:22:19] 2025-11-26 22:21:28,289 | INFO     | sum of deviations: 4019397550707.0576
[2025-11-26 17:22:19] 2025-11-26 22:21:28,289 | INFO     | mean x: 1764164552.1784313
[2025-11-26 17:22:19] 2025-11-26 22:21:28,289 | INFO     | mean y: 7510656.620588236
[2025-11-26 17:22:19] 2025-11-26 22:21:28,290 | INFO     | intersect: -21540838796.280586
[2025-11-26 17:22:19] 2025-11-26 22:21:28,290 | INFO     | chi2: 16.662122934345973
[2025-11-26 17:22:19] 2025-11-26 22:21:28,291 | INFO     | sum of square deviations: 324253032764.21246
[2025-11-26 17:22:19] 2025-11-26 22:21:28,309 | INFO     | sum of deviations: 5075332141791.003
[2025-11-26 17:22:19] 2025-11-26 22:21:28,309 | INFO     | mean x: 1764164399.6817734
[2025-11-26 17:22:19] 2025-11-26 22:21:28,310 | INFO     | mean y: 7544099.956650246
[2025-11-26 17:22:19] 2025-11-26 22:21:28,310 | INFO     | intersect: -27605829951.718678
[2025-11-26 17:22:19] 2025-11-26 22:21:28,310 | INFO     | chi2: 12.571619287983562
[2025-11-26 17:22:19] 2025-11-26 22:21:28,311 | INFO     | current chi2=12.571619287983562 (change=24.549714718108174 %)
[2025-11-26 17:22:19] 2025-11-26 22:21:28,311 | INFO     | right removable region: 1014
[2025-11-26 17:22:19] 2025-11-26 22:21:28,312 | INFO     | sum of square deviations: 324252610644.21277
[2025-11-26 17:22:19] 2025-11-26 22:21:28,331 | INFO     | sum of deviations: 2956622128665.761
[2025-11-26 17:22:19] 2025-11-26 22:21:28,331 | INFO     | mean x: 1764164704.6817734
[2025-11-26 17:22:19] 2025-11-26 22:21:28,332 | INFO     | mean y: 7544305.949753694
[2025-11-26 17:22:19] 2025-11-26 22:21:28,332 | INFO     | intersect: -16078581860.036516
[2025-11-26 17:22:19] 2025-11-26 22:21:28,333 | INFO     | chi2: 12.341245809030413
[2025-11-26 17:22:19] 2025-11-26 22:21:28,333 | INFO     | current chi2=12.341245809030413 (change=25.93233252654047 %)
[2025-11-26 17:22:19] 2025-11-26 22:21:28,334 | INFO     | sum of square deviations: 319484319302.4794
[2025-11-26 17:22:19] 2025-11-26 22:21:28,354 | INFO     | sum of deviations: 2146774504098.6357
[2025-11-26 17:22:19] 2025-11-26 22:21:28,354 | INFO     | mean x: 1764164857.1821783
[2025-11-26 17:22:19] 2025-11-26 22:21:28,354 | INFO     | mean y: 7570206.757425742
[2025-11-26 17:22:19] 2025-11-26 22:21:28,355 | INFO     | intersect: -11846733455.763893
[2025-11-26 17:22:19] 2025-11-26 22:21:28,355 | INFO     | chi2: 9.934604333575598
[2025-11-26 17:22:19] 2025-11-26 22:21:28,356 | INFO     | current chi2=9.934604333575598 (change=19.50079848254714 %)
[2025-11-26 17:22:19] 2025-11-26 22:21:28,356 | INFO     | left removable region: 20
[2025-11-26 17:22:19] 2025-11-26 22:21:28,357 | INFO     | sum of square deviations: 304540364835.6758
[2025-11-26 17:22:19] 2025-11-26 22:21:28,377 | INFO     | time since job start (62287s) is within the limit (172800.0s)
[2025-11-26 17:22:19] 2025-11-26 22:21:28,377 | INFO     | sum of deviations: 1800175103633.731
[2025-11-26 17:22:19] 2025-11-26 22:21:28,377 | INFO     | mean x: 1764164979.1911469
[2025-11-26 17:22:19] 2025-11-26 22:21:28,377 | INFO     | mean y: 7661027.901408451
[2025-11-26 17:22:19] 2025-11-26 22:21:28,378 | INFO     | intersect: -10420532541.630913
[2025-11-26 17:22:19] 2025-11-26 22:21:28,378 | INFO     | chi2: 0.784892622959983
[2025-11-26 17:22:19] 2025-11-26 22:21:28,379 | INFO     | current memory leak: 5.91 B/s (using 994 data points, chi2=0.78)
[2025-11-26 17:22:19] 2025-11-26 22:21:28,379 | INFO     | could have reported an average CPU frequency of 3202 MHz (38 samples)
[2025-11-26 17:22:19] 2025-11-26 22:21:28,380 | INFO     | ..............................
[2025-11-26 17:22:19] 2025-11-26 22:21:28,380 | INFO     | . Timing measurements:
[2025-11-26 17:22:19] 2025-11-26 22:21:28,380 | INFO     | . get job = 0 s
[2025-11-26 17:22:19] 2025-11-26 22:21:28,380 | INFO     | . initial setup = 2 s
[2025-11-26 17:22:19] 2025-11-26 22:21:28,380 | INFO     | . payload setup = 20 s
[2025-11-26 17:22:19] 2025-11-26 22:21:28,380 | INFO     | . stage-in = 0 s
[2025-11-26 17:22:19] 2025-11-26 22:21:28,380 | INFO     | . payload execution = 62209 s
[2025-11-26 17:22:19] 2025-11-26 22:21:28,380 | INFO     | . stage-out = 3 s
[2025-11-26 17:22:19] 2025-11-26 22:21:28,380 | INFO     | . log creation = 0 s
[2025-11-26 17:22:19] 2025-11-26 22:21:28,381 | INFO     | ..............................
[2025-11-26 17:22:19] 2025-11-26 22:21:28,539 | INFO     | 
[2025-11-26 17:22:19] 2025-11-26 22:21:28,540 | INFO     | job summary report
[2025-11-26 17:22:19] 2025-11-26 22:21:28,540 | INFO     | --------------------------------------------------
[2025-11-26 17:22:19] 2025-11-26 22:21:28,540 | INFO     | PanDA job id: 6897394586
[2025-11-26 17:22:19] 2025-11-26 22:21:28,540 | INFO     | task id: 47556161
[2025-11-26 17:22:19] 2025-11-26 22:21:28,540 | INFO     | errors: (none)
[2025-11-26 17:22:19] 2025-11-26 22:21:28,540 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 17:22:19] 2025-11-26 22:21:28,540 | INFO     | pilot state: finished 
[2025-11-26 17:22:19] 2025-11-26 22:21:28,540 | INFO     | transexitcode: 0
[2025-11-26 17:22:19] 2025-11-26 22:21:28,540 | INFO     | exeerrorcode: 0
[2025-11-26 17:22:19] 2025-11-26 22:21:28,540 | INFO     | exeerrordiag: 
[2025-11-26 17:22:19] 2025-11-26 22:21:28,540 | INFO     | exitcode: 0
[2025-11-26 17:22:19] 2025-11-26 22:21:28,540 | INFO     | exitmsg: OK
[2025-11-26 17:22:19] 2025-11-26 22:21:28,540 | INFO     | cpuconsumptiontime: 198395 s
[2025-11-26 17:22:19] 2025-11-26 22:21:28,540 | INFO     | nevents: 1000
[2025-11-26 17:22:19] 2025-11-26 22:21:28,540 | INFO     | neventsw: 0
[2025-11-26 17:22:19] 2025-11-26 22:21:28,540 | INFO     | pid: 2116454
[2025-11-26 17:22:19] 2025-11-26 22:21:28,540 | INFO     | pgrp: 2116454
[2025-11-26 17:22:19] 2025-11-26 22:21:28,541 | INFO     | corecount: 9
[2025-11-26 17:22:19] 2025-11-26 22:21:28,541 | INFO     | event service: False
[2025-11-26 17:22:19] 2025-11-26 22:21:28,541 | INFO     | sizes: {0: 2284265, 1: 2284265, 11: 2284293, 12: 2284583, 22: 2284611, 62234: 2337978, 62238: 2347028, 62250: 2347218}
[2025-11-26 17:22:19] 2025-11-26 22:21:28,541 | INFO     | --------------------------------------------------
[2025-11-26 17:22:19] 2025-11-26 22:21:28,541 | INFO     | 
[2025-11-26 17:22:19] 2025-11-26 22:21:28,541 | INFO     | executing command: ls -lF /tmp/boinchome/slots/3
[2025-11-26 17:22:19] 2025-11-26 22:21:28,570 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 17:22:19] 2025-11-26 22:21:28,571 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 17:22:19] 2025-11-26 22:21:28,571 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 17:22:19] 2025-11-26 22:21:28,571 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 17:22:19] 2025-11-26 22:21:28,571 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 17:22:19] 2025-11-26 22:21:28,571 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 17:22:19] 2025-11-26 22:21:28,571 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 17:22:19] 2025-11-26 22:21:28,571 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 17:22:19] 2025-11-26 22:21:28,571 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 17:22:19] 2025-11-26 22:21:28,571 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 17:22:19] 2025-11-26 22:21:28,571 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 17:22:19] 2025-11-26 22:21:28,571 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 17:22:19] 2025-11-26 22:21:28,571 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 17:22:19] 2025-11-26 22:21:28,572 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 17:22:19] 2025-11-26 22:21:28,572 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 17:22:19] 2025-11-26 22:21:28,572 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 17:22:19] 2025-11-26 22:21:28,572 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 17:22:19] 2025-11-26 22:21:28,572 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 17:22:19] 2025-11-26 22:21:28,572 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 17:22:19] 2025-11-26 22:21:28,572 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 17:22:19] 2025-11-26 22:21:28,572 | INFO     | job 6897394586 has completed (purged errors)
[2025-11-26 17:22:19] 2025-11-26 22:21:28,572 | INFO     | overall cleanup function is called
[2025-11-26 17:22:19] 2025-11-26 22:21:29,589 | INFO     | --- collectZombieJob: --- 10, [2116454]
[2025-11-26 17:22:19] 2025-11-26 22:21:29,590 | INFO     | zombie collector waiting for pid 2116454
[2025-11-26 17:22:19] 2025-11-26 22:21:29,590 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 17:22:19] 2025-11-26 22:21:29,590 | INFO     | collected zombie processes
[2025-11-26 17:22:19] 2025-11-26 22:21:29,590 | INFO     | will attempt to kill all subprocesses of pid=2116454
[2025-11-26 17:22:19] 2025-11-26 22:21:30,367 | INFO     | process IDs to be killed: [2116454] (in reverse order)
[2025-11-26 17:22:19] 2025-11-26 22:21:30,585 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 17:22:19] 2025-11-26 22:21:30,585 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 17:22:19] 2025-11-26 22:21:30,615 | INFO     | did not find any defunct processes belonging to 2116454
[2025-11-26 17:22:19] 2025-11-26 22:21:30,671 | INFO     | did not find any defunct processes belonging to 2116454
[2025-11-26 17:22:19] 2025-11-26 22:21:30,672 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 17:22:19] 2025-11-26 22:21:30,673 | INFO     | ready for new job
[2025-11-26 17:22:19] 2025-11-26 22:21:30,673 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 17:22:19] 2025-11-26 22:21:30,705 | INFO     | ***************************************
[2025-11-26 17:22:19] 2025-11-26 22:21:30,706 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 17:22:19] 2025-11-26 22:21:30,706 | INFO     | ***************************************
[2025-11-26 17:22:19] 2025-11-26 22:21:30,706 | INFO     | 
[2025-11-26 17:22:19] 2025-11-26 22:21:30,711 | INFO     | architecture information:
[2025-11-26 17:22:19] 2025-11-26 22:21:30,711 | INFO     | executing command: cat /etc/os-release
[2025-11-26 17:22:19] 2025-11-26 22:21:30,742 | INFO     | cat /etc/os-release:
[2025-11-26 17:22:19] NAME="CentOS Linux"
[2025-11-26 17:22:19] VERSION="7 (Core)"
[2025-11-26 17:22:19] ID="centos"
[2025-11-26 17:22:19] ID_LIKE="rhel fedora"
[2025-11-26 17:22:19] VERSION_ID="7"
[2025-11-26 17:22:19] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 17:22:19] ANSI_COLOR="0;31"
[2025-11-26 17:22:19] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 17:22:19] HOME_URL="https://www.centos.org/"
[2025-11-26 17:22:19] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 17:22:19] 
[2025-11-26 17:22:19] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 17:22:19] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 17:22:19] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 17:22:19] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 17:22:19] 
[2025-11-26 17:22:19] 2025-11-26 22:21:30,743 | INFO     | ***************************************
[2025-11-26 17:22:19] 2025-11-26 22:21:31,246 | INFO     | executing command: df -mP /tmp/boinchome/slots/3
[2025-11-26 17:22:19] 2025-11-26 22:21:31,354 | INFO     | sufficient remaining disk space (66866642944 B)
[2025-11-26 17:22:19] 2025-11-26 22:21:31,361 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 17:22:19] 2025-11-26 22:21:31,361 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 17:22:19] 2025-11-26 22:21:31,361 | INFO     | update_server=False
[2025-11-26 17:22:19] 2025-11-26 22:21:31,362 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 17:22:19] 2025-11-26 22:21:31,362 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 17:22:19] 2025-11-26 22:21:31,595 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 17:22:19] 2025-11-26 22:21:31,596 | INFO     | aborting loop
[2025-11-26 17:22:19] 2025-11-26 22:21:31,656 | INFO     | all payload control threads have been joined
[2025-11-26 17:22:19] 2025-11-26 22:21:31,731 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 17:22:19] 2025-11-26 22:21:32,222 | INFO     | all data control threads have been joined
[2025-11-26 17:22:19] 2025-11-26 22:21:32,275 | INFO     | all job control threads have been joined
[2025-11-26 17:22:19] 2025-11-26 22:21:32,367 | INFO     | [job] retrieve thread has finished
[2025-11-26 17:22:19] 2025-11-26 22:21:32,601 | INFO     | [job] job monitor thread has finished
[2025-11-26 17:22:19] 2025-11-26 22:21:32,634 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 17:22:19] 2025-11-26 22:21:32,661 | INFO     | [payload] control thread has finished
[2025-11-26 17:22:19] 2025-11-26 22:21:32,784 | INFO     | [data] copytool_in thread has finished
[2025-11-26 17:22:19] 2025-11-26 22:21:33,217 | INFO     | [job] validate thread has finished
[2025-11-26 17:22:19] 2025-11-26 22:21:33,235 | INFO     | [data] control thread has finished
[2025-11-26 17:22:19] 2025-11-26 22:21:33,288 | INFO     | [job] control thread has finished
[2025-11-26 17:22:19] 2025-11-26 22:21:33,495 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 17:22:19] 2025-11-26 22:21:33,502 | INFO     | [payload] failed_post thread has finished
[2025-11-26 17:22:19] 2025-11-26 22:21:33,519 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 17:22:19] 2025-11-26 22:21:33,608 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 17:22:19] 2025-11-26 22:21:33,689 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 17:22:19] 2025-11-26 22:21:33,737 | INFO     | [data] copytool_out thread has finished
[2025-11-26 17:22:19] 2025-11-26 22:21:33,773 | INFO     | [payload] validate_post thread has finished
[2025-11-26 17:22:19] 2025-11-26 22:21:34,524 | INFO     | [job] queue monitor thread has finished
[2025-11-26 17:22:19] 2025-11-26 22:21:35,371 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 17:22:19] 2025-11-26 22:22:02,342 | INFO     | PID=2086555 has CPU usage=5.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-26 17:22:19] 2025-11-26 22:22:02,342 | INFO     | .. there are 70 such processes running
[2025-11-26 17:22:19] 2025-11-26 22:22:02,343 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 17:22:19] 2025-11-26 22:22:02,343 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 17:22:19] 2025-11-26 22:22:02,343 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 17:22:19] 2025-11-26 22:22:11,323 | INFO     | [monitor] cgroup control has ended
[2025-11-26 17:22:19] 2025-11-26 22:22:13,158 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140714646026048)>', '<ExcThread(monitor, started 140714285438720)>']
[2025-11-26 17:22:19] 2025-11-26 22:22:13,408 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 17:22:19] 2025-11-26 22:22:13,408 | INFO     | [monitor] control thread has ended
[2025-11-26 17:22:19] 2025-11-26 22:22:18,187 | INFO     | all workflow threads have been joined
[2025-11-26 17:22:19] 2025-11-26 22:22:18,187 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 17:22:19] 2025-11-26 22:22:18,187 | INFO     | traces error code: 0
[2025-11-26 17:22:19] 2025-11-26 22:22:18,188 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 17:22:19] 2025-11-26 22:22:18,636 [wrapper] ==== pilot stdout END ====
[2025-11-26 17:22:19] 2025-11-26 22:22:18,662 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 17:22:19] 2025-11-26 22:22:18,682 [wrapper] pilotpid: 2086555
[2025-11-26 17:22:19] 2025-11-26 22:22:18,700 [wrapper] Pilot exit status: 0
[2025-11-26 17:22:19] 2025-11-26 22:22:18,770 [wrapper] pandaids: 6897394586
[2025-11-26 17:22:19] 2025-11-26 22:22:19,001 [wrapper] cleanup supervisor_pilot 1788349 2086556
[2025-11-26 17:22:19] 2025-11-26 22:22:19,010 [wrapper] Test setup, not cleaning
[2025-11-26 17:22:19] 2025-11-26 22:22:19,023 [wrapper] apfmon messages muted
[2025-11-26 17:22:19] 2025-11-26 22:22:19,026 [wrapper] ==== wrapper stdout END ====
[2025-11-26 17:22:19] 2025-11-26 22:22:19,028 [wrapper] ==== wrapper stderr END ====
[2025-11-26 17:22:19]  *** Error codes and diagnostics ***
[2025-11-26 17:22:19]     "exeErrorCode": 0,
[2025-11-26 17:22:19]     "exeErrorDiag": "",
[2025-11-26 17:22:19]     "pilotErrorCode": 0,
[2025-11-26 17:22:19]     "pilotErrorDiag": "",
[2025-11-26 17:22:19]  *** Listing of results directory ***
[2025-11-26 17:22:19] total 1322852
[2025-11-26 17:22:19] -rw-r--r--. 1 boincer umatlas    576529 Nov 25 11:48 pilot3.tar.gz
[2025-11-26 17:22:19] -rwx------. 1 boincer umatlas     36292 Nov 25 11:55 runpilot2-wrapper.sh
[2025-11-26 17:22:19] -rw-r--r--. 1 boincer umatlas      5112 Nov 25 11:55 queuedata.json
[2025-11-26 17:22:19] -rw-r--r--. 1 boincer umatlas       100 Nov 26 00:02 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 17:22:19] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 26 00:02 run_atlas
[2025-11-26 17:22:19] -rw-r--r--. 1 boincer umatlas       105 Nov 26 00:02 job.xml
[2025-11-26 17:22:19] -rw-r--r--. 2 boincer umatlas 410849350 Nov 26 00:02 EVNT.47483658._002227.pool.root.1
[2025-11-26 17:22:19] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 00:02 start_atlas.sh
[2025-11-26 17:22:19] drwxrwx--x. 2 boincer umatlas      4096 Nov 26 00:02 shared
[2025-11-26 17:22:19] -rw-r--r--. 2 boincer umatlas    590101 Nov 26 00:02 input.tar.gz
[2025-11-26 17:22:19] -rw-r--r--. 1 boincer umatlas         0 Nov 26 00:02 boinc_lockfile
[2025-11-26 17:22:19] -rw-r--r--. 1 boincer umatlas      2786 Nov 26 00:02 pandaJob.out
[2025-11-26 17:22:19] -rw-------. 1 boincer umatlas        57 Nov 26 00:02 setup.sh.local
[2025-11-26 17:22:19] -rw-------. 1 boincer umatlas    991877 Nov 26 00:03 agis_schedconf.cvmfs.json
[2025-11-26 17:22:19] drwx------. 5 boincer umatlas      4096 Nov 26 00:03 pilot3
[2025-11-26 17:22:19] -rw-r--r--. 1 boincer umatlas       533 Nov 26 17:12 boinc_task_state.xml
[2025-11-26 17:22:19] -rw-r--r--. 1 boincer umatlas      6947 Nov 26 17:20 init_data.xml
[2025-11-26 17:22:19] -rw-------. 1 boincer umatlas 919753455 Nov 26 17:20 HITS.47556161._002110.pool.root.1
[2025-11-26 17:22:19] -rw-------. 1 boincer umatlas      1074 Nov 26 17:21 memory_monitor_summary.json
[2025-11-26 17:22:19] -rw-------. 1 boincer umatlas   1516240 Nov 26 17:21 agis_ddmendpoints.agis.ALL.json
[2025-11-26 17:22:19] -rw-------. 1 boincer umatlas   2256635 Nov 26 17:21 log.47556161._002110.job.log.tgz.1
[2025-11-26 17:22:19] -rw-------. 1 boincer umatlas      8638 Nov 26 17:21 heartbeat.json
[2025-11-26 17:22:19] -rw-------. 1 boincer umatlas        95 Nov 26 17:22 pilot_heartbeat.json
[2025-11-26 17:22:19] -rw-r--r--. 1 boincer umatlas      8192 Nov 26 17:22 boinc_mmap_file
[2025-11-26 17:22:19] -rw-r--r--. 1 boincer umatlas        29 Nov 26 17:22 wrapper_checkpoint.txt
[2025-11-26 17:22:19] -rw-------. 1 boincer umatlas      4824 Nov 26 17:22 pilotlog.txt
[2025-11-26 17:22:19] -rw-------. 1 boincer umatlas   7779455 Nov 26 17:22 log.47556161._002110.job.log.1
[2025-11-26 17:22:19] -rw-------. 1 boincer umatlas       353 Nov 26 17:22 output.list
[2025-11-26 17:22:19] -rw-r--r--. 1 boincer umatlas       620 Nov 26 17:22 runtime_log
[2025-11-26 17:22:19] -rw-------. 1 boincer umatlas  10055680 Nov 26 17:22 result.tar.gz
[2025-11-26 17:22:19] -rw-------. 1 boincer umatlas       665 Nov 26 17:22 yd4KDmaVBi8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmwQMKDm9Mtvwm.diag
[2025-11-26 17:22:19] -rw-r--r--. 1 boincer umatlas      9338 Nov 26 17:22 runtime_log.err
[2025-11-26 17:22:19] -rw-r--r--. 1 boincer umatlas     21559 Nov 26 17:22 stderr.txt
[2025-11-26 17:22:19] HITS file was successfully produced:
[2025-11-26 17:22:19] -rw-------. 1 boincer umatlas 919753455 Nov 26 17:20 shared/HITS.pool.root.1
[2025-11-26 17:22:19]  *** Contents of shared directory: ***
[2025-11-26 17:22:19] total 1309848
[2025-11-26 17:22:19] -rw-r--r--. 2 boincer umatlas 410849350 Nov 26 00:02 ATLAS.root_0
[2025-11-26 17:22:19] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 00:02 start_atlas.sh
[2025-11-26 17:22:19] -rw-r--r--. 2 boincer umatlas    590101 Nov 26 00:02 input.tar.gz
[2025-11-26 17:22:19] -rw-------. 1 boincer umatlas 919753455 Nov 26 17:20 HITS.pool.root.1
[2025-11-26 17:22:19] -rw-------. 1 boincer umatlas  10055680 Nov 26 17:22 result.tar.gz
17:22:20 (2073159): run_atlas exited; CPU time 200849.251363
17:22:20 (2073159): called boinc_finish(0)

</stderr_txt>
]]>

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